Kim Sneppen

Kim Sneppen

Professor

ORCID: 0000-0001-9820-3567

Publication year:
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1 - 100 out of 216Page size: 100
  1. 2024
  2. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    The counterintuitive implications of superspreading diseases

    Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Tradeoff between speed and reproductive number in pathogen evolution

    Eilersen, Andreas Thomas, Nielsen, Bjarke Frost & Sneppen, Kim, 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Sustainable diversity of phage-bacteria systems

    Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2

    Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

    sgk681, sgk681, Seymour, Philip Allan, Sneppen, Kim, Trusina, Ala, Egeskov-Madsen, A. L. R., Jørgensen, Mette Christine, Jensen, Mogens Høgh & Serup, Palle, 2023, In: Nature Communications. 14, 17 p., 348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2022
  11. Published

    Emerging diversity in a population of evolving intransitive dice

    Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

    Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Pancreatic alpha and beta cells are globally phase-locked

    Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Protection of bacteriophage-sensitive Escherichia coli by lysogens

    Brown, Stanley, Mitarai, Namiko & Sneppen, Kim, 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Spatial model of Ebola outbreaks contained by behavior change

    Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems

    Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, Kim & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin

    Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. 2021
  20. Published

    Superspreading quantified from bursty epidemic trajectories

    Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Differences in social activity increase efficiency of contact tracing

    Nielsen, Bjarke Frost, Sneppen, Kim, Simonsen, L. & Mathiesen, Joachim, 2 Oct 2021, In: European Physical Journal B. 94, 10, 11 p., 209.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The COVID-19 pandemic: key considerations for the epidemic and its control

    Ørskov, S., Nielsen, Bjarke Frost, Føns, S., Sneppen, Kim & Simonsen, L., Jul 2021, In: APMIS. 129, 7, p. 408-420 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Superspreading of airborne pathogens in a heterogeneous world

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Establishment of heterochromatin in domain-size-dependent bursts

    Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control

    Sneppen, Kim, Nielsen, Bjarke Frost, Taylor, R. J. & Simonsen, L., 6 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 6 p., 2016623118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    COVID-19 superspreading suggests mitigation by social network modulation

    Nielsen, Bjarke Frost, Simonsen, L. & Sneppen, Kim, 15 Mar 2021, In: Physical Review Letters. 126, 6 p., 118301.

    Research output: Contribution to journal › Letter › Research › peer-review

  27. Published

    SARS-CoV-2 superspreading in cities vs the countryside

    Eilersen, Andreas Thomas & Sneppen, Kim, 23 Feb 2021, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 129, 7, p. 401-407 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Social contagion in a world with asymmetric influence

    Halvorsen, G. S., Pedersen, B. N. & Sneppen, Kim, 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19

    Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. 2020
  31. Published

    On Phage Adsorption to Bacterial Chains

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Cost-benefit of limited isolation and testing in COVID-19 mitigation

    Eilersen, Andreas Thomas & Sneppen, Kim, 29 Oct 2020, In: Scientific Reports. 10, 1, 7 p., 18543.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.

    Research output: Contribution to journal › Journal article › Research

  34. Published

    Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

    Ping, D., Wang, T., Fraebel, D. T., Maslov, S., Sneppen, Kim & Kuehn, S., 1 Aug 2020, In: ISME Journal. 14, 8, p. 2007-2018 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The uneasy coexistence of predators and pathogens

    Eilersen, Andreas Thomas & Sneppen, Kim, 2 Jul 2020, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 7, 7 p., 42.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator

    Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, Leila, Sneppen, Kim, Hammer, K. & Kilstrup, M., 26 May 2020, In: Scientific Reports. 10, 1, 13 p., 8659.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Optimal Transport Flows for Distributed Production Networks

    Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Chaos in disease outbreaks among prey

    Eilersen, Andreas Thomas, Jensen, Mogens Høgh & Sneppen, Kim, 3 Mar 2020, In: Scientific Reports. 10, 7 p., 3907.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Modelling value bubbles in an attention based economy

    Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Model to Link Cell Shape and Polarity with Organogenesis

    Nielsen, Bjarke Frost, Nissen, Silas Boye, Sneppen, Kim, Mathiesen, Joachim & Trusina, Ala, 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning

    Kirkeby, Carsten, Græsbøll, K., Halasa, T., Sneppen, Kim & Christiansen, L. E., 2020, In: Ingenøren.dk.

    Research output: Contribution to journal › Journal article › Communication

  42. Published

    Sustainability of spatially distributed bacteria-phage systems

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. 2019
  44. Published

    Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

    Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent

    Sneppen, Kim & Ringrose, L., 13 May 2019, In: Nature Communications. 10, 18 p., 2133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Applying allometric scaling to predator-prey systems

    Eilersen, Andreas Thomas & Sneppen, Kim, 8 Feb 2019, In: Physical Review E. 99, 2, 8 p., 022405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Exploring the contribution of exposure heterogeneity to the cessation of the 2014 Ebola epidemic

    Uekermann, F., Simonsen, L. & Sneppen, Kim, 1 Feb 2019, In: PLoS ONE. 14, 2, 11 p., e0210638.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model

    Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

    Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. 2018
  52. Published

    Theoretical tool bridging cell polarities with development of robust morphologies

    Nissen, Silas Boye, Rønhild, S., Trusina, Ala & Sneppen, Kim, 27 Nov 2018, In: eLife. 7, 25 p., e38407.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Globalization in a nutshell

    Sneppen, Kim & Bornholdt, S., 29 Oct 2018, In: Physical Review E. 98, 4, 6 p., 022314.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Theory of invasion extinction dynamics in minimal food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Exploring the Link between Nucleosome Occupancy and DNA Methylation

    Lövkvist, Cecilia, Sneppen, Kim & Härter, Jan Olaf Mirko, 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    A growing microcolony can survive and support persistent propagation of virulent phages

    Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Deconstructing the principles of ductal network formation in the pancreas

    Dahl-Jensen, Svend Bertel, Yennek, S., Flasse, L., Larsen, Hjalte List, Sever, D., Karremore, G., Novak, Ivana, Sneppen, Kim & Botton, A., 2018, In: PLOS Biology. 16, 7, 25 p., e2002842.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. 2017
  59. Published

    Existence and construction of large stable food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 8 Sep 2017, In: Physical Review E. 96, 3, 032406.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Severe population collapses and species extinctions in multihost epidemic dynamics

    Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Four simple rules that are sufficient to generate the mammalian blastocyst

    Nissen, Silas Boye, Perera Pérez, Marta, Martin Gonzalez, Javier, Morgani, S. M. C., Jensen, Mogens Høgh, Sneppen, Kim, Brickman, Joshua Mark & Trusina, Ala, 12 Jul 2017, In: PLOS Biology. 15, 7, p. 1-30 e2000737.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements

    Hao, N., Sneppen, Kim, Shearwin, K. E. & Dodd, I. B., 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5074-5085

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Models of life: epigenetics, diversity and cycles

    Sneppen, Kim, 1 Apr 2017, In: Reports on Progress in Physics. 80, 4, 042601.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Occlusion of the ribosome binding site connects the translational initiation frequency, mRNA stability and premature transcription termination

    Eriksen, M., Sneppen, Kim, Pedersen, Steen & Mitarai, Namiko, 14 Mar 2017, In: Frontiers in Microbiology. 8, 7 p., 362.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

    Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. 2016
  67. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Nucleosome dynamics and maintenance of epigenetic states of CpG islands

    Sneppen, Kim & Dodd, I. B., 28 Jun 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 6, 062417.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    DNA methylation in human epigenomes depends on local topology of CpG sites

    Lövkvist, Cecilia, Dodd, I. B., Sneppen, Kim & Härter, Jan Olaf Mirko, 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5123-5132

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Nanog, Oct4 and Tet1 interplay in establishing pluripotency

    Olariu, V., Lövkvist, Cecilia & Sneppen, Kim, 5 May 2016, In: Scientific Reports. 6, 25438.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Diffusion retardation by binding of tobramycin in an alginate biofilm model

    Cao, B., Christophersen, L., Kolpen, Mette, Jensen, Peter Østrup, Sneppen, Kim, Høiby, Niels, Moser, Claus Ernst & Sams, T., 21 Apr 2016, In: P L o S One. 11, 4, 11 p., e0153616.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli

    Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Three is much more than two in coarsening dynamics of cyclic competitions

    Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas

    Dahl-Jensen, Svend Bertel, Figueiredo-Larsen, E. M., Botton, A. & Sneppen, Kim, 23 Feb 2016, In: Physical Biology. 13, 1, 016007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Food Web Assembly Rules for Generalized Lotka-Volterra Equations

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    A cross-immunization model for the extinction of old influenza strains

    Uekermann, F. & Sneppen, Kim, 2016, In: Scientific Reports. 6, 8 p., 25907.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Nucleation and spreading of a heterochromatic domain in fission yeast

    Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Stabilization of epigenetic states of CpG islands by local cooperation

    Sormani, G., Härter, Jan Olaf Mirko, Lövkvist, Cecilia & Sneppen, Kim, 2016, In: Molecular BioSystems. 12, 7, p. 2142-2146

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. 2015
  80. Published

    Diversity Waves in Collapse-Driven Population Dynamics

    Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity

    Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Restriction modification systems as engines of diversity

    Sneppen, Kim, Semsey, S., Seshasayee, A. S. N. & Krishna, S., 2 Jun 2015, In: Frontiers in Microbiology. 6, 528.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Well-temperate phage: optimal bet-hedging against local environmental collapses

    Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae

    Sneppen, Kim & Dodd, I. B., 1 Apr 2015, In: Epigenetics. 10, 4, p. 293-302

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. 2014
  86. Published

    Mismatch repair at stop codons is directed independent of GATC methylation on the Escherichia coli chromosome

    Sneppen, Kim & Semsey, S., 5 Dec 2014, In: Scientific Reports. 4, 7436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Phage and bacteria support mutual diversity in a narrowing staircase of coexistence

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Models of life: Dynamics and regulation in biological systems

    Sneppen, Kim, 5 Oct 2014, Cambridge University Press ed. Cambridge. 342 p.

    Research output: Book/Report › Book › Research › peer-review

  89. Published

    Speciation, diversification, and coexistence of sessile species that compete for space

    Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states

    Härter, Jan Olaf Mirko, Lövkvist, Cecilia, Dodd, I. B. & Sneppen, Kim, 1 Feb 2014, In: Nucleic Acids Research. 42, 4, p. 2235-2244

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Effect of supercoiling on the λ switch

    Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 1 Jan 2014, In: Bacteriophage. 4, 2, p. 1-5 5 p., e27517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Modeling rises and falls in money addicted social hierarchies

    Dybiec, B., Mitarai, Namiko & Sneppen, Kim, 2014, In: Physica Scripta. 89, 8, 085002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. 2013
  94. Published

    DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch

    Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17386-91 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy

    Cataudella, I., Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 1 Aug 2013, In: PLoS Computational Biology. 9, 8, e1003174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Genetic Regulatory Networks that count to 3

    Lehmann, M. & Sneppen, Kim, 1 Jul 2013, In: Journal of Theoretical Biology. 329, p. 15-19 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Quality control system response to stochastic growth of amyloid fibrils

    Pigolotti, S., Lizana, L., Sneppen, Kim & Otzen, D., 2 May 2013, In: F E B S Letters. 587, 9, p. 1405-1410 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes

    Alsing, A. & Sneppen, Kim, 1 May 2013, In: Nucleic Acids Research. 41, 9, 4755-4764.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Labyrinthine clustering in a spatial rock-paper-scissors ecosystem

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 8 Apr 2013, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 87, 4, p. 042702 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. 2012
  101. Published

    Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression

    Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Axelrod model: accepting or discussing

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 1 Oct 2012, In: European Physical Journal B. Condensed Matter and Complex Systems. 85, 10, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Spreading of multiple epidemics with cross immunization

    Uekermann, F. & Sneppen, Kim, 13 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, Part 2, p. 036108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  104. Published

    Multistability with a Metastable Mixed State

    Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  105. Published

    Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus

    Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126

    Research output: Contribution to journal › Journal article › Research › peer-review

  106. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12828-33 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  107. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Science of the United States of America. 109, 31, p. 12828-12833

    Research output: Contribution to journal › Journal article › Research › peer-review

  108. Published

    Emergence of diversity in a model ecosystem

    Mitarai, Namiko, Mathiesen, Joachim & Sneppen, Kim, 30 Jul 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 86, 1, p. 011929 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  109. Published

    Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  110. Published

    Information spreading and development of cultural centers

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 18 May 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 85, 5, p. 056116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  111. Published

    Conditional Cooperativity in Toxin-Antitoxin Regulation Prevents Random Toxin Activation and Promotes Fast Translational Recovery

    Cataudella, I., Trusina, Ala, Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 11 Apr 2012, In: Nucleic Acids Research. 40, 14, p. 6424-6434

    Research output: Contribution to journal › Journal article › Research › peer-review

  112. Published

    Correction to; Why Do Phage Play Dice? (vol 83, pg 11416, 2009)

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 1 Mar 2012, In: Journal of Virology. 86, 5, p. 22898-2898 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  113. Published

    Protein Localization with Flexible DNA or RNA

    Bernhardsson, P. J. S., Mitarai, Namiko & Sneppen, Kim, 10 Feb 2012, In: PLoS.ONE.. 7, 2, p. e29218

    Research output: Contribution to journal › Journal article › Research › peer-review

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