Kim Sneppen

Kim Sneppen

Professor

ORCID: 0000-0001-9820-3567

Publication year:
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  1. 2024
  2. Published

    Diversity and ecotones in a model ecosystems of sessile species

    Hofer, M. & Sneppen, Kim, 20 Feb 2024, In: Physical Review E. 109, 2, 7 p., 024309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. 2023
  5. Published

    The counterintuitive implications of superspreading diseases

    Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Tradeoff between speed and reproductive number in pathogen evolution

    Eilersen, Andreas Thomas, Nielsen, Bjarke Frost & Sneppen, Kim, 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Sustainable diversity of phage-bacteria systems

    Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2

    Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

    sgk681, sgk681, Seymour, Philip Allan, Sneppen, Kim, Trusina, Ala, Egeskov-Madsen, A. L. R., Jørgensen, Mette Christine, Jensen, Mogens Høgh & Serup, Palle, 2023, In: Nature Communications. 14, 17 p., 348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. 2022
  12. Published

    Emerging diversity in a population of evolving intransitive dice

    Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

    Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Pancreatic alpha and beta cells are globally phase-locked

    Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Protection of bacteriophage-sensitive Escherichia coli by lysogens

    Brown, Stanley, Mitarai, Namiko & Sneppen, Kim, 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Spatial model of Ebola outbreaks contained by behavior change

    Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems

    Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, Kim & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin

    Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. 2021
  21. Published

    Superspreading quantified from bursty epidemic trajectories

    Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Differences in social activity increase efficiency of contact tracing

    Nielsen, Bjarke Frost, Sneppen, Kim, Simonsen, L. & Mathiesen, Joachim, 2 Oct 2021, In: European Physical Journal B. 94, 10, 11 p., 209.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The COVID-19 pandemic: key considerations for the epidemic and its control

    Ørskov, S., Nielsen, Bjarke Frost, Føns, S., Sneppen, Kim & Simonsen, L., Jul 2021, In: APMIS. 129, 7, p. 408-420 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Superspreading of airborne pathogens in a heterogeneous world

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Establishment of heterochromatin in domain-size-dependent bursts

    Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control

    Sneppen, Kim, Nielsen, Bjarke Frost, Taylor, R. J. & Simonsen, L., 6 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 6 p., 2016623118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    COVID-19 superspreading suggests mitigation by social network modulation

    Nielsen, Bjarke Frost, Simonsen, L. & Sneppen, Kim, 15 Mar 2021, In: Physical Review Letters. 126, 6 p., 118301.

    Research output: Contribution to journal › Letter › Research › peer-review

  28. Published

    SARS-CoV-2 superspreading in cities vs the countryside

    Eilersen, Andreas Thomas & Sneppen, Kim, 23 Feb 2021, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 129, 7, p. 401-407 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Social contagion in a world with asymmetric influence

    Halvorsen, G. S., Pedersen, B. N. & Sneppen, Kim, 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19

    Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. 2020
  32. Published

    On Phage Adsorption to Bacterial Chains

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Cost-benefit of limited isolation and testing in COVID-19 mitigation

    Eilersen, Andreas Thomas & Sneppen, Kim, 29 Oct 2020, In: Scientific Reports. 10, 1, 7 p., 18543.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.

    Research output: Contribution to journal › Journal article › Research

  35. Published

    Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

    Ping, D., Wang, T., Fraebel, D. T., Maslov, S., Sneppen, Kim & Kuehn, S., 1 Aug 2020, In: ISME Journal. 14, 8, p. 2007-2018 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    The uneasy coexistence of predators and pathogens

    Eilersen, Andreas Thomas & Sneppen, Kim, 2 Jul 2020, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 7, 7 p., 42.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator

    Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, Leila, Sneppen, Kim, Hammer, K. & Kilstrup, M., 26 May 2020, In: Scientific Reports. 10, 1, 13 p., 8659.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Optimal Transport Flows for Distributed Production Networks

    Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Chaos in disease outbreaks among prey

    Eilersen, Andreas Thomas, Jensen, Mogens Høgh & Sneppen, Kim, 3 Mar 2020, In: Scientific Reports. 10, 7 p., 3907.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Modelling value bubbles in an attention based economy

    Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Model to Link Cell Shape and Polarity with Organogenesis

    Nielsen, Bjarke Frost, Nissen, Silas Boye, Sneppen, Kim, Mathiesen, Joachim & Trusina, Ala, 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning

    Kirkeby, Carsten, Græsbøll, K., Halasa, T., Sneppen, Kim & Christiansen, L. E., 2020, In: Ingenøren.dk.

    Research output: Contribution to journal › Journal article › Communication

  43. Published

    Sustainability of spatially distributed bacteria-phage systems

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. 2019
  45. Published

    Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

    Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent

    Sneppen, Kim & Ringrose, L., 13 May 2019, In: Nature Communications. 10, 18 p., 2133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Applying allometric scaling to predator-prey systems

    Eilersen, Andreas Thomas & Sneppen, Kim, 8 Feb 2019, In: Physical Review E. 99, 2, 8 p., 022405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Exploring the contribution of exposure heterogeneity to the cessation of the 2014 Ebola epidemic

    Uekermann, F., Simonsen, L. & Sneppen, Kim, 1 Feb 2019, In: PLoS ONE. 14, 2, 11 p., e0210638.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model

    Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

    Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. 2018
  53. Published

    Theoretical tool bridging cell polarities with development of robust morphologies

    Nissen, Silas Boye, Rønhild, S., Trusina, Ala & Sneppen, Kim, 27 Nov 2018, In: eLife. 7, 25 p., e38407.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Globalization in a nutshell

    Sneppen, Kim & Bornholdt, S., 29 Oct 2018, In: Physical Review E. 98, 4, 6 p., 022314.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Theory of invasion extinction dynamics in minimal food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Exploring the Link between Nucleosome Occupancy and DNA Methylation

    Lövkvist, Cecilia, Sneppen, Kim & Härter, Jan Olaf Mirko, 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    A growing microcolony can survive and support persistent propagation of virulent phages

    Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342

    Research output: Contribution to journal › Journal article › Research › peer-review

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