Julius Bier Kirkegaard

Julius Bier Kirkegaard

Assistant Professor, Tenure Track Assistant Professor


  1. 2023
  2. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Fast detection of slender bodies in high density microscopy data

    Alonso, Albert & Kirkegaard, Julius Bier, 2023, In: Communications Biology . 6, 1, 12 p., 754.

    Research output: Contribution to journalJournal articlepeer-review

  4. Published

    Protocol to assess metabolic activity of Pseudomonas aeruginosa by measuring heat flow using isothermal calorimetry

    Beilharz, K., Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim, Bjarnsholt, Thomas & Lichtenberg, Mads, 2023, In: STAR Protocols. 4, 2, 102269.

    Research output: Contribution to journalJournal articlepeer-review

  5. 2022
  6. Published

    Emerging diversity in a population of evolving intransitive dice

    Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Curvature strains as a global orchestrator of morphogenesis

    Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations

    Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa

    Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Transcriptomic Fingerprint of Bacterial Infection in Lower Extremity Ulcers

    Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Nielsen, C. H., Kirketerp-Møller, K., Malone, M. & Bjarnsholt, Thomas, 2022, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 130, 8, p. 524-534

    Research output: Contribution to journalJournal articlepeer-review

  11. 2021
  12. Published

    Superspreading quantified from bursty epidemic trajectories

    Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    Superspreading of airborne pathogens in a heterogeneous world

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19

    Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  15. 2020
  16. Published

    Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation

    Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.

    Research output: Contribution to journalJournal article

  17. Published

    Optimal Transport Flows for Distributed Production Networks

    Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.

    Research output: Contribution to journalJournal articlepeer-review

  18. 2019
  19. Published

    Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

    Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.

    Research output: Contribution to journalJournal articlepeer-review

  20. Fluctuations in the Kinetics of Linear Protein Self-Assembly.

    Michaels, T., Dear, A., Kirkegaard, Julius Bier, Saar, K. L., Weitz, D. A. & Knowles, T., 23 Aug 2019, In: Apollo - University of Cambridge Repository. 116, 25, p. 258103-258103 1 p.

    Research output: Contribution to journalJournal articlepeer-review

  21. Multistep Inhibition of α-Synuclein Aggregation and Toxicity in Vitro and in Vivo by Trodusquemine.

    perni, M., Flagmeier, P., Limbocker, R., Cascella, R., Aprile, F. A., Galvagnion, C., Heller, G. T., Meisl, G., Chen, S. W., Kumita, J., challa, P. K., Kirkegaard, J., Cohen, S. IA., Mannini, B., Barbut, D., Nollen, E. AA., Cecchi, C., Casasin, N. C., Knowles, T., Chiti, F. & 3 others, Zasloff, M., Vendruscolo, M. & Dobson, C. M., 18 Jul 2019, In: Apollo - University of Cambridge Repository.

    Research output: Contribution to journalJournal articlepeer-review

  22. 2018
  23. The noisy basis of morphogenesis: Mechanisms and mechanics of cell sheet folding inferred from developmental variability.

    Haas, P., Höhn, S. S., Honerkamp-Smith, A. R., Kirkegaard, Julius Bier & Goldstein, R., 8 Sep 2018, In: P L o S Biology. e2005536.

    Research output: Contribution to journalJournal articlepeer-review

  24. Massively parallel C. elegans tracking provides multi-dimensional fingerprints for phenotypic discovery.

    perni, M., challa, P. K., Kirkegaard, Julius Bier, Limbocker, R., Koopman, M., Hardenberg, M. C., Sormanni, P., Müller, T., Saar, K. L., Roode, L. W., Habchi, J., Vecchi, G., Fernando, N., Casford, S., Nollen, E. A., Vendruscolo, M., Dobson, C. & Knowles, T., 27 Jul 2018, In: Apollo - University of Cambridge Repository. 32 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. The role of tumbling frequency and persistence in optimal run-and-tumble chemotaxis

    Kirkegaard, Julius Bier & Goldstein, R. E., Jul 2018, In: IMA Journal of Applied Mathematics. 83, 4, p. 700-719 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  26. 2017
  27. Intra-chain organisation of hydrophobic residues controls inter-chain aggregation rates of amphiphilic polymers.

    Varilly, P., Willard, A., Kirkegaard, Julius Bier, Knowles, T. & Chandler, D., Apr 2017, In: The Journal of Chemical Physics. 146, 5 p., 135102.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity

    Perni, M., Galvagnion, C., Maltsev, A., Meisl, G., Müller, M. B. D., Challa, P. K., Kirkegaard, J. B., Flagmeier, P., Cohen, S. I. A., Cascella, R., Chen, S. W., Limbocker, R., Sormanni, P., Heller, G. T., Aprile, F. A., Cremades, N., Cecchi, C., Chiti, F., Nollen, E. A. A., Knowles, T. P. J. & 4 others, Vendruscolo, M., Bax, A., Zasloff, M. & Dobson, C. M., 7 Feb 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 6, p. E1009-E1017

    Research output: Contribution to journalJournal articlepeer-review

  29. 2016
  30. Aerotaxis in the closest relatives of animals.

    Kirkegaard, Julius Bier, Bouillant, A., Marron, A., Leptos, K. & Goldstein, R., Nov 2016, In: eLife. 5, 16 p., e18109.

    Research output: Contribution to journalJournal articlepeer-review

  31. Filter-feeding, near-field flows, and the morphologies of colonial choanoflagellates.

    Kirkegaard, Julius Bier & Goldstein, R., Nov 2016, In: Physical Review E. 94, 7 p., 052401.

    Research output: Contribution to journalJournal articlepeer-review

  32. Fluctuations in the Kinetics of Linear Protein Self-Assembly.

    Michaels, T., Dear, A., Kirkegaard, Julius Bier, Saar, K., Weitz, D. & Knowles, T., Jun 2016, In: Physical Review Letters. 116, 5 p., 258103.

    Research output: Contribution to journalJournal articlepeer-review

  33. Molecular mechanisms of protein aggregation from global fitting of kinetic models.

    Meisl, G., Kirkegaard, Julius Bier, Arosio, P., Michaels, T., Vendruscolo, M., Dobson, C., Linse, S. & Knowles, T., Jan 2016, In: Nature Protocols. 11, p. 252-272 22 p.

    Research output: Contribution to journalJournal articlepeer-review

  34. Motility of Colonial Choanoflagellates and the Statistics of Aggregate Random Walkers.

    Kirkegaard, Julius Bier, Marron, A. & Goldstein, R., Jan 2016, In: Physical Review Letters. 116, 6 p., 038102.

    Research output: Contribution to journalJournal articlepeer-review

  35. 2014
  36. Easyworm: an open-source software tool to determine the mechanical properties of worm-like chains.

    Lamour, G., Kirkegaard, Julius Bier, Li, H., Knowles, T. & Gsponer, J., Jul 2014, In: Source Code for Biology and Medicine. 9, 6 p., 16.

    Research output: Contribution to journalJournal articlepeer-review

  37. Differences in nucleation behavior underlie the contrasting aggregation kinetics of the Aβ40 and Aβ42 peptides.

    Meisl, G., Yang, X., Hellstrand, E., Frohm, B., Kirkegaard, Julius Bier, Cohen, S., Dobson, C., Linse, S. & Knowles, T., Jun 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, p. 9384-9389 5 p.

    Research output: Contribution to journalJournal articlepeer-review

  38. 2012
  39. Modelling electrolyte conductivity in a water electrolyzer cell

    Caspersen, M. & Kirkegaard, Julius Bier, 2012, In: International Journal of Hydrogen Energy. 37, 9, p. 7436-7441 6 p.

    Research output: Contribution to journalJournal articlepeer-review

ID: 37768596