Biocomplexity

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  1. 2024
  2. Published

    Structural Rearrangements of Pigeon Cryptochrome 4 Undergoing a Complete Redox Cycle

    Schuhmann, Fabian Johannes, Ramsay, J. L., Kattnig, D. R. & Solov’yov, I. A., 3 Apr 2024, In: The Journal of Physical Chemistry B. 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Dynamic control of the Bose-Einstein-like condensation transition in scalar active matter

    Berx, Jonas, 27 Mar 2024, In: New Journal of Physics. 26, 14 p., 033049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Work statistics at first-passage times

    Mamede, I. N., Singh, Prashant, Pal, A., Fiore, C. E. & Proesmans, Karel Josef A, 19 Mar 2024, In: New Journal of Physics. 26, 3, 20 p., 033034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Universal thermodynamic bounds on the Fano factor of discriminatory networks with unidirectional transitions

    Berx, Jonas & Proesmans, Karel Josef A, 15 Mar 2024, In: Europhysics Letters. 145, 8 p., 51001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Characteristics of Station‐Derived Convective Cold Pools Over Equatorial Africa

    Höller, Jannik, Härter, Jan Olaf Mirko & Da Silva, N. A., 14 Mar 2024, In: Geophysical Research Letters. 51, 6, 10 p., e2023GL107308.

    Research output: Contribution to journal › Letter › Research › peer-review

  7. Published

    4D Neutron Imaging of Solute Transport and Fluid Flow in Sandstone Before and After Mineral Precipitation

    Shafabakhsh, P., Cordonnier, B., Pluymakers, A., Le Borgne, T., Mathiesen, Joachim, Linga, G., Hu, Y., Kaestner, A. & Renard, F., 13 Mar 2024, In: Water Resources Research. 60, 3, 19 p., e2023WR036293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Bayesian inference is facilitated by modular neural networks with different time scales

    Ichikawa, K., Kaneko, Kunihiko & Serre, T. (ed.), 13 Mar 2024, In: PLOS Computational Biology. 20, 3, 21 p., e1011879.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Experimental investigation of walking drops: Wave field and interaction with slit structures

    Ellegaard, Clive Sigurd & Levinsen, Mogens, 11 Mar 2024, In: Physical Review E. 109, 3, 21 p., 035101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory

    Kohsokabe, T., Kuratanai, S., Kaneko, Kunihiko & Maini, P. K. (ed.), 29 Feb 2024, In: PLOS Computational Biology. 20, 2, 24 p., e1011867.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Diversity and ecotones in a model ecosystems of sessile species

    Hofer, M. & Sneppen, Kim, 20 Feb 2024, In: Physical Review E. 109, 2, 7 p., 024309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Constructing universal phenomenology for biological cellular systems: an idiosyncratic review on evolutionary dimensional reduction

    Kaneko, Kunihiko, 13 Feb 2024, In: Journal of Statistical Mechanics: Theory and Experiment. 2024, 2, 21 p., 024002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Active Matter under Control: Insights from Response Theory

    Davis, L. K., Proesmans, Karel Josef A & Fodor, É., 7 Feb 2024, In: Physical Review X. 14, 1, 19 p., 011012.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Detecting Cold Pool Family Trees in Convection Resolving Simulations

    Höller, Jannik, Fiévet, Romain Frédéric Sébastien & Härter, Jan Olaf Mirko, 5 Feb 2024, In: Journal of Advances in Modeling Earth Systems. 16, 1, 21 p., e2023MS003682.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Spontaneous self-constraint in active nematic flows

    Head, L. C., Doré, C., Keogh, R. R., Bonn, Lasse Frederik, Negro, G., Marenduzzo, D., Doostmohammadi, Amin, Thijssen, Kristian, López-león, T. & Shendruk, T. N., 18 Jan 2024, In: Nature Physics. 20, 3, p. 492-500

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Mesoscale simulation of biomembranes with FreeDTS

    Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    U‐Net Segmentation for the Detection of Convective Cold Pools From Cloud and Rainfall Fields

    Höller, Jannik, Fiévet, R., Engelbrecht, E. & Härter, Jan Olaf Mirko, 16 Jan 2024, In: Journal of Geophysical Research: Atmospheres. 129, 1, 16 p., e2023JD040126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Biological Applications of Thermoplasmonics

    Thusgaard Ruhoff, Victoria, Arastoo, Mohammadreza, Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 6 Jan 2024, In: Nano Letters. 24, 3, p. 777-789 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Accepted/In press

    A comprehensive analysis of age of onset and cumulative incidence of mental disorders: A Danish register study

    Beck, C., Pedersen, C. B., Plana-Ripoll, O., Dalsgaard, Søren, Debost, J. C. P., Laursen, T. M., Musliner, K. L., Mortensen, P. B., Pedersen, Marianne, Petersen, L. V., Yilmaz, Z., McGrath, J. & Agerbo, E., 2024, (Accepted/In press) In: Acta Psychiatrica Scandinavica.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Alveolar cytokines and interferon autoantibodies in COVID-19 ARDS

    Jonassen, T. B., Jørgensen, S. E., Mitchell, N. H., Mogensen, T. H., Berg, Ronan Martin Griffin, Ronit, A. & Plovsing, Ronni Thermann Reitz, 2024, In: Frontiers in Immunology. 15, 9 p., 1353012.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms

    Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. 2023
  24. Published

    Evolutionary shaping of low-dimensional path facilitates robust and plastic switching between phenotypes

    Sakata, A. & Kaneko, Kunihiko, 26 Dec 2023, In: Physical Review Research. 5, 4, 19 p., 043296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Thermodynamics of interacting systems: The role of the topology and collective effects

    Mamede, I. N., Proesmans, Karel Josef A & Fiore, C. E., 22 Dec 2023, In: Physical Review Research. 5, 4, 12 p., 043278.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The Precipitation Characteristics of Mesoscale Convective Systems Over Europe

    Da Silva, N. A. & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Journal of Geophysical Research: Atmospheres. 128, 23, 20 p., e2023JD039045.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The Role of Passive Cloud Volumes in the Transition From Shallow to Deep Atmospheric Convection

    Vraciu, C. V., Kruse, Irene Livia & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Geophysical Research Letters. 50, 23, 9 p., e2023GL105996.

    Research output: Contribution to journal › Letter › Research › peer-review

  28. Published

    Introducing the Automated Ligand Searcher

    Jacobsen, L., Hungerland, J., Bačić, V., Gerhards, L., Schuhmann, Fabian Johannes & Solov’yov, I. A., 11 Dec 2023, In: Journal of Chemical Information and Modeling. 63, 23, p. 7518-7528 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Prediction of cross-fitness for adaptive evolution to different environmental conditions: Consequence of phenotypic dimensional reduction

    Sato, T. U., Furusawa, C. & Kaneko, Kunihiko, 11 Dec 2023, In: Physical Review Research. 5, 4, 14 p., 043222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Solvable neural network model for input-output associations: Optimal recall at the onset of chaos

    Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Machine-learning vs. logistic regression for preoperative prediction of medical morbidity after fast-track hip and knee arthroplasty—a comparative study

    Michelsen, C., Jørgensen, C. C., Heltberg, Mathias Spliid, Jensen, Mogens Høgh, Lucchetti, Alessandra, Petersen, P. B., Petersen, T., Kehlet, Henrik, Madsen, F., Hansen, T. B., Gromov, Kirill, Jakobsen, T., Varnum, C., Overgaard, S., Andersen, Mikkel Rathsach & Hansen, L., 29 Nov 2023, In: BMC Anesthesiology. 23, 1, 12 p., 391.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Elasticity tunes mechanical stress localization around active topological defects

    Bonn, Lasse Frederik, Ardaševa, Aleksandra & Doostmohammadi, Amin, 28 Nov 2023, In: Soft Matter. 20, 1, p. 115-123 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The counterintuitive implications of superspreading diseases

    Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations

    Nonn, A., Kiss, B., Pezeshkian, Weria, Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Submitted

    Three-component Bose-Einstein condensates and wetting without walls

    Indekeu, J. O., Thu, N. V. & Berx, Jonas, 24 Sep 2023, (Submitted).

    Research output: Working paper › Preprint › Research

  36. Published

    Nudging cooperation among agents in an experimental social network

    Jensen, Gorm Gruner, Busch, M. B., Piovesan, Marco & Härter, Jan Olaf Mirko, 12 Sep 2023, In: Applied Network Science. 8, 1, 13 p., 62.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Dynamic Fluid Connectivity Controls Solute Dispersion in Multiphase Porous Media Flow

    Mathiesen, Joachim, Linga, G., Misztal, M., Renard, F. & Le Borgne, T., 28 Aug 2023, In: Geophysical Research Letters. 50, 16, 11 p., e2023GL105233.

    Research output: Contribution to journal › Letter › Research › peer-review

  38. Published

    On the Sensitivity of Convective Cold Pools to Mesh Resolution

    Fiévet, Romain Frédéric Sébastien, Meyer, B. & Härter, Jan Olaf Mirko, 25 Aug 2023, In: Journal of Advances in Modeling Earth Systems. 15, 8, 21 p., e2022MS003382.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Precision-dissipation trade-off for driven stochastic systems

    Proesmans, Karel Josef A, 24 Aug 2023, In: Communications Physics. 6, 1, 6 p., 226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Motility mediates satellite formation in confined biofilms

    Cordero, Mireia, Mitarai, Namiko & Jauffred, Liselotte, 17 Aug 2023, In: ISME Journal. 17, p. 1819-1827 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Extracellular matrix sensing via modulation of orientational order of integrins and F-actin in focal adhesions

    Grudtsyna, Valeriia, Packirisamy, S., Bidone, T. C. & Swaminathan, V., 10 Aug 2023, In: Life Science Alliance. 6, 10, 16 p., e202301898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Entropy of different phases formed by soft rods

    Chattopadhyay, Jayeeta, Lin, S. & Maiti, P. K., 3 Aug 2023, In: Journal of Chemical Physics. 159, 5, 11 p., 054503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Spontaneous flows and dynamics of full-integer topological defects in polar active matter

    Rønning, J., Renaud, J., Doostmohammadi, Amin & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Active topological defect absorption by a curvature singularity

    Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter

    Andersen, Benjamin Halager, Renaud-Mornant, J., Rønning, J., Angheluta, L. & Doostmohammadi, Amin, 14 Jun 2023, In: Physical Review Fluids. 8, 14 p., 063101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Editorial: Active and Intelligent Living Matter: from Fundamentals to Applications

    Doostmohammadi, Amin, Mazza, M. G., Shendruk, T. N. & Stark, H., 12 Jun 2023, In: Frontiers in Physics. 11, 2 p., 1231716.

    Research output: Contribution to journal › Editorial › Research › peer-review

  48. Published

    Tradeoff between speed and reproductive number in pathogen evolution

    Eilersen, Andreas Thomas, Nielsen, Bjarke Frost & Sneppen, Kim, 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Sustainable diversity of phage-bacteria systems

    Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Coupled oscillator cooperativity as a control mechanism in chronobiology

    Heltberg, Mathias Spliid, Jiang, Y., Fan, Y., Zhang, Z., Nielsen, Malthe Skytte Nordentoft, Lin, W., Qian, L., Ouyang, Q., Jensen, Mogens Høgh & Wei, P., 17 May 2023, In: Cell Systems. 14, 5, p. 382-391.e5 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Lateral Organization of Plasma Membrane Proteins Studied Using Thermoplasmonics

    Arastoo, Mohammadreza, 16 May 2023, Niels Bohr Institute ed. Copenhagen, Denmark: University of Copenhagen. 193 p.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    Direct chemical induction of hepatocyte-like cells with capacity for liver repopulation

    Bai, Y., Yang, Z., sgk681, sgk681, Ding, W., Qi, J., Liu, F., Wang, X., Zhou, B., Zhang, W., Zhuang, X., Li, G. & Zhao, Y., 1 May 2023, In: Hepatology. 77, 5, p. 1550-1565 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Transition of social organisations driven by gift relationships

    Itao, K. & Kaneko, Kunihiko, 29 Apr 2023, In: Humanities and Social Sciences Communications. 10, 1, 10 p., 188.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. E-pub ahead of print

    Nature Exposure is Associated With Reduced Smartphone Use

    Minor, Kelton Ray, Glavind, Kristoffer Lind, Schwartz, A. J., Danforth, C. M., Lehmann, S. & Bjerre-Nielsen, Andreas, 27 Apr 2023, (E-pub ahead of print) In: Environment and Behavior.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Double-replica theory for evolution of genotype-phenotype interrelationship

    Pham, Minh Tuan & Kaneko, Kunihiko, 21 Apr 2023, In: Physical Review Research. 5, 2, 13 p., 023049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Mechanical basis and topological routes to cell elimination

    Monfared, S., Ravichandran, G., Andrade, J. & Doostmohammadi, Amin, 18 Apr 2023, In: eLife. 12, 20 p., 82435.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Thermoplasmonic Vesicle Fusion Reveals Membrane Phase Segregation of Influenza Spike Proteins

    Moreno Pescador, Guillermo Sergio, Arastoo, Mohammadreza, Thusgaard Ruhoff, Victoria, Chiantia, S., Daniels, R. & Bendix, Poul Martin, 11 Apr 2023, In: Nano Letters. 23, 8, p. 3377-3384 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Generic optimization by fast chaotic exploration and slow feedback fixation

    Matsushita, Y. & Kaneko, Kunihiko, 10 Apr 2023, In: Physical Review Research. 5, 7 p., 023017.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Group-specific behavior change following terror attacks

    Juul, J. L., Alessandretti, L., Dammeyer, Jesper, Zettler, Ingo, Jørgensen, Sune Lehmann & Mathiesen, Joachim, Apr 2023, In: Journal of Computational Social Science. 6, p. 1-18

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Roadmap for optical tweezers

    Volpe, G., Maragò, O. M., Rubinsztein-Dunlop, H., Pesce, G., Stilgoe, A. B., Volpe, G., Tkachenko, G., Truong, V. G., Chormaic, S. N., Kalantarifard, F., Elahi, P., Käll, M., Callegari, A., Marqués, M. I., Neves, A. A. R., Moreira, W. L., Fontes, A., Cesar, C. L., Saija, R., Saidi, A. & 63 others, Beck, P., Eismann, J. S., Banzer, P., Fernandes, T. F. D., Pedaci, F., Bowen, W. P., Vaippully, R., Lokesh, M., Roy, B., Thalhammer-Thurner, G., Ritsch-Marte, M., García, L. P., Arzola, A. V., Castillo, I. P., Argun, A., Muenker, T. M., Vos, B. E., Betz, T., Cristiani, I., Minzioni, P., Reece, P. J., Wang, F., McGloin, D., Ndukaife, J. C., Quidant, R., Roberts, R. P., Laplane, C., Volz, T., Gordon, R., Hanstorp, D., Marmolejo, J. T., Bruce, G. D., Dholakia, K., Li, T., Brzobohatý, O., Simpson, S. H., Zemánek, P., Ritort, F., Roichman, Y., Bobkova, V., Wittkowski, R., Denz, C., Pavan Kumar, G. V., Foti, A., Donato, M. G., Gucciardi, P. G., Gardini, L., Bianchi, G., Kashchuk, A. V., Capitanio, M., Paterson, L., Jones, P. H., Berg-Sørensen, K., Farhangibarooji, Younes, Oddershede, L. B., Pouladian, P., Preece, D., Adiels, C. B., De Luca, A. C., Magazzù, A., Ciriza, D. B., Iatì, M. A. & Swartzlander, G. A., Apr 2023, In: Journal of Physics-Photonics. 5, 2, 136 p., 022501.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Avoidance of error catastrophe via proofreading innate to template-directed polymerization

    Matsubara, Y. J., Takeuchi, N. & Kaneko, Kunihiko, 13 Mar 2023, In: Physical Review Research. 5, 13 p., 013170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    The excitable fluid mosaic

    Heimburg, Thomas Rainer, 1 Mar 2023, In: B B A - Biomembranes. 1865, 3, 11 p., 184104.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Collective rotational motion of freely expanding T84 epithelial cell colonies

    Ascione, F., Caserta, S., Esposito, S., Rachela, V. V., Maiuri, L., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Guido, S., 22 Feb 2023, In: Journal of the Royal Society Interface. 20, 199, 12 p., 20220719.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Diffusion dynamics and characterization of attogram masses in optically trapped single nanoparticles using laser-induced plasma imaging

    Purohit, P., Fortes, F. J. J. & Laserna, J., 22 Feb 2023, In: Nano Research. 16, p. 7470-7480 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2

    Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Immunostaining protocol for infiltrating brain cancer spheroids for light-sheet imaging

    Bjorknes, B., Neye, O. E., Hamerlik, P. & Jauffred, Liselotte, 9 Feb 2023, In: PLoS ONE. 18, 2, 8 p., 0281161.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Homophily-Based Social Group Formation in a Spin Glass Self-Assembly Framework

    Korbel, J., Lindner, S. D., Pham, Minh Tuan, Hanel, R. & Thurner, S., 30 Jan 2023, In: Physical Review Letters. 130, 5, 6 p., 057401.

    Research output: Contribution to journal › Letter › Research › peer-review

  68. Published

    Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms

    Thusgaard Ruhoff, Victoria, Bendix, Poul Martin & Pezeshkian, Weria, 16 Jan 2023, In: Emerging topics in life sciences. 7, 1, p. 81-93 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation

    Knudsen, Teresa Emmilie Toudal, Hamilton, W. B., Proks, Martin, Lykkegaard, M., Linneberg-Agerholm, Madeleine, Nielsen, Alexander Valentin, Perera Pérez, Marta, Malzard, L. L., Trusina, Ala & Brickman, Joshua Mark, 2023, In: Cell Systems. 14, 9, p. 788-805.e8

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    A linear reciprocal relationship between robustness and plasticity in homeostatic biological networks

    Hatakeyama, T. S. & Kaneko, Kunihiko, 2023, In: PLoS ONE. 18, 1, 11 p., e0277181.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Epidemic modelling of monitoring public behavior using surveys during pandemic-induced lockdowns

    Koher, A., Jørgensen, F., Petersen, M. B. & Lehmann, S., 2023, In: Communications Medicine. 3, 1, 10 p., 80.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Exploring the complex dynamics of biological oscillators and their downstream effects

    Lucchetti, Alessandra, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 133 p.

    Research output: Book/Report › Ph.D. thesis › Research

  73. Published

    Fast detection of slender bodies in high density microscopy data

    Alonso, Albert & Kirkegaard, Julius Bier, 2023, In: Communications Biology . 6, 1, 12 p., 754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

    sgk681, sgk681, Seymour, Philip Allan, Sneppen, Kim, Trusina, Ala, Egeskov-Madsen, A. L. R., Jørgensen, Mette Christine, Jensen, Mogens Høgh & Serup, Palle, 2023, In: Nature Communications. 14, 17 p., 348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Label-free optical interferometric microscopy to characterize morphodynamics in living plants

    Ebrahimi, Samira, Moreno Pescador, Guillermo Sergio, Persson, Staffan, Jauffred, Liselotte & Bendix, Poul Martin, 2023, In: Frontiers in Plant Science. 14, 8 p., 1156478.

    Research output: Contribution to journal › Review › Research › peer-review

  76. Published

    Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics

    Unterweger, Iris Anne, Klepstad, J., Hannezo, E., Lundegaard, Pia Rengtved, Trusina, Ala & Ober, Elke, 2023, In: PLOS Biology. 21, 10, 30 p., e3002315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Models of low data stochastic time series in Cell dynamics and Covid-19

    Martiny, E. S., 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 74 p.

    Research output: Book/Report › Ph.D. thesis › Research

  78. Published

    Necking and failure of a particulate gel strand: signatures of yielding on different length scales

    Thijssen, Kristian, Liverpool, T. B., Royall, P. C. & Jack, R. L., 2023, In: Soft Matter. 19, 38, p. 7412-7428 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Population dynamics of phage-bacteria ecosystems under challenging conditions

    Marantos, Anastasios, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/Report › Ph.D. thesis › Research

  80. Published

    Protocol to assess metabolic activity of Pseudomonas aeruginosa by measuring heat flow using isothermal calorimetry

    Beilharz, K., Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim, Bjarnsholt, Thomas & Lichtenberg, Mads, 2023, In: STAR Protocols. 4, 2, 102269.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    The improved health utility of once-weekly subcutaneous semaglutide 2.4 mg compared with placebo in the STEP 1-4 obesity trials

    Bjørner, Jakob Bue, Larsen, S., Lübker, C. & Holst-Hansen, T., 2023, In: Diabetes, Obesity and Metabolism. 25, 8, p. 2142-2150 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. 2022
  83. Published

    Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism

    Himeoka, Y. & Mitarai, Namiko, 30 Dec 2022, In: Physical Review Research. 4, 4, 23 p., 043223.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Extracting, quantifying, and comparing dynamical and biomechanical properties of living matter through single particle tracking

    Scott, S., Weiss, M., Selhuber-Unkel, C., Farhangibarooji, Younes, Sabri, A., Erler, Janine, Metzler, R. & Oddershede, L. B., 22 Dec 2022, In: Physical Chemistry Chemical Physics. 2023, 25, p. 1513-1537 26 p.

    Research output: Contribution to journal › Review › Research › peer-review

  85. Published

    Uni- and multivariate bias adjustment methods in Nordic catchments: Complexity and performance in a changing climate br

    Tootoonchi, F., Härter, Jan Olaf Mirko, Todorovic, A., Raty, O., Grabs, T. & Teutschbein, C., 20 Dec 2022, In: Science of the Total Environment. 853, 18 p., 158615.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Emerging diversity in a population of evolving intransitive dice

    Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Enhanced DNA repair through droplet formation and p53 oscillations

    Heltberg, Mathias Spliid, Lucchetti, Alessandra, Hsieh, F., Duy Pham Minh Nguyen, Chen, S. & Jensen, Mogens Høgh, 10 Nov 2022, In: Cell. 185, 23, p. 4394-4408 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Autotoxin-mediated latecomer killing in yeast communities

    Oda, A. H., Tamura, M., Kaneko, Kunihiko, Ohta, K. & Hatakeyama, T. S., 7 Nov 2022, In: PLOS Biology. 20, 11, 23 p., 3001844.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Strength in numbers: effect of protein crowding on the shape of cell membranes

    Thusgaard Ruhoff, Victoria, Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria & Bendix, Poul Martin, 31 Oct 2022, In: Biochemical Society Transactions. 50, 5, p. 1257-1267 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Comprehensive analysis of gene regulatory dynamics, fitness landscape, and population evolution during sexual reproduction

    Okubo, K. & Kaneko, Kunihiko, 14 Oct 2022, In: New Journal of Physics. 24, 10, 13 p., 103017.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database

    Tang, Q., Ren, W., Wang, J. & Kaneko, Kunihiko, 7 Oct 2022, In: Molecular Biology and Evolution. 39, 10, 13 p., msac197.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    The effect of stretching on nerve excitability

    Heimburg, Thomas Rainer, 7 Oct 2022, In: Human Movement Science. 86, 10 p., 103000.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Differentiation of closely related mineral phases in Mars atmosphere using frequency domain laser-induced plasma acoustics

    Alvarez-Llamas, C., Purohit, P., Moros, J. & Laserna, J., 15 Sep 2022, In: Analytica Chimica Acta. 1226, 8 p., 340261.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Spatial heterogeneity affects predictions from early-curve fitting of pandemic outbreaks: a case study using population data from Denmark

    Heltberg, Mathias Spliid, Michelsen, Christian Buus, Martiny, E. S., Christensen, L. E., Jensen, Mogens Høgh, Halasa, T. & Petersen, Troels Christian, 14 Sep 2022, In: Royal Society Open Science. 9, 9, 9 p., 220018.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    A systematic evaluation on the impact of sample-related and environmental factors in the analytical performance of acoustic emission from laser-induced plasmas

    Bosakova, M., Purohit, P., Alvarez-Llamas, C., Moros, J., Novotny, K. & Laserna, J., 8 Sep 2022, In: Analytica Chimica Acta. 1225, 9 p., 340224.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

    Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Spatiotemporal NF-kappa B dynamics encodes the position, amplitude, and duration of local immune inputs

    Son, M., Frank, T., Holst-Hansen, T., Wang, A. G., Junkin, M., Kashaf, S. S., Trusina, Ala & Tay, S., 2 Sep 2022, In: Science Advances. 8, 35, 14 p., 6240.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    The geometry of evolved community matrix spectra

    Lastad, S. B. & Härter, Jan Olaf Mirko, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14668.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Tumor spheroids accelerate persistently invading cancer cells

    Audoin, M., Sogaard, M. T. & Jauffred, Liselotte, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14713.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming

    Perera Pérez, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, S., S. Monteiro, Rita, Trusina, Ala & Brickman, Joshua Mark, 15 Aug 2022, In: eLife. 11, 23 p., e78967.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network

    Okubo, K., Kaneko, Kunihiko & Nelson, K. E. (ed.), 29 Jul 2022, In: PNAS Nexus. 1, 3, 12 p., 097.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Onset of turbulence in channel flows with scale-invariant roughness

    Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.

    Research output: Contribution to journal › Journal article › Research › peer-review

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