Biocomplexity

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  1. 2024
  2. Published

    Structural Rearrangements of Pigeon Cryptochrome 4 Undergoing a Complete Redox Cycle

    Schuhmann, Fabian Johannes, Ramsay, J. L., Kattnig, D. R. & Solov’yov, I. A., 3 Apr 2024, In: The Journal of Physical Chemistry B. 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Dynamic control of the Bose-Einstein-like condensation transition in scalar active matter

    Berx, Jonas, 27 Mar 2024, In: New Journal of Physics. 26, 14 p., 033049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Work statistics at first-passage times

    Mamede, I. N., Singh, Prashant, Pal, A., Fiore, C. E. & Proesmans, Karel Josef A, 19 Mar 2024, In: New Journal of Physics. 26, 3, 20 p., 033034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Universal thermodynamic bounds on the Fano factor of discriminatory networks with unidirectional transitions

    Berx, Jonas & Proesmans, Karel Josef A, 15 Mar 2024, In: Europhysics Letters. 145, 8 p., 51001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Characteristics of Station‐Derived Convective Cold Pools Over Equatorial Africa

    Höller, Jannik, Härter, Jan Olaf Mirko & Da Silva, N. A., 14 Mar 2024, In: Geophysical Research Letters. 51, 6, 10 p., e2023GL107308.

    Research output: Contribution to journal › Letter › Research › peer-review

  7. Published

    4D Neutron Imaging of Solute Transport and Fluid Flow in Sandstone Before and After Mineral Precipitation

    Shafabakhsh, P., Cordonnier, B., Pluymakers, A., Le Borgne, T., Mathiesen, Joachim, Linga, G., Hu, Y., Kaestner, A. & Renard, F., 13 Mar 2024, In: Water Resources Research. 60, 3, 19 p., e2023WR036293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Bayesian inference is facilitated by modular neural networks with different time scales

    Ichikawa, K., Kaneko, Kunihiko & Serre, T. (ed.), 13 Mar 2024, In: PLOS Computational Biology. 20, 3, 21 p., e1011879.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Experimental investigation of walking drops: Wave field and interaction with slit structures

    Ellegaard, Clive Sigurd & Levinsen, Mogens, 11 Mar 2024, In: Physical Review E. 109, 3, 21 p., 035101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory

    Kohsokabe, T., Kuratanai, S., Kaneko, Kunihiko & Maini, P. K. (ed.), 29 Feb 2024, In: PLOS Computational Biology. 20, 2, 24 p., e1011867.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Diversity and ecotones in a model ecosystems of sessile species

    Hofer, M. & Sneppen, Kim, 20 Feb 2024, In: Physical Review E. 109, 2, 7 p., 024309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Constructing universal phenomenology for biological cellular systems: an idiosyncratic review on evolutionary dimensional reduction

    Kaneko, Kunihiko, 13 Feb 2024, In: Journal of Statistical Mechanics: Theory and Experiment. 2024, 2, 21 p., 024002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Active Matter under Control: Insights from Response Theory

    Davis, L. K., Proesmans, Karel Josef A & Fodor, É., 7 Feb 2024, In: Physical Review X. 14, 1, 19 p., 011012.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Detecting Cold Pool Family Trees in Convection Resolving Simulations

    Höller, Jannik, Fiévet, Romain Frédéric Sébastien & Härter, Jan Olaf Mirko, 5 Feb 2024, In: Journal of Advances in Modeling Earth Systems. 16, 1, 21 p., e2023MS003682.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Spontaneous self-constraint in active nematic flows

    Head, L. C., Doré, C., Keogh, R. R., Bonn, Lasse Frederik, Negro, G., Marenduzzo, D., Doostmohammadi, Amin, Thijssen, Kristian, López-león, T. & Shendruk, T. N., 18 Jan 2024, In: Nature Physics. 20, 3, p. 492-500

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Mesoscale simulation of biomembranes with FreeDTS

    Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    U‐Net Segmentation for the Detection of Convective Cold Pools From Cloud and Rainfall Fields

    Höller, Jannik, Fiévet, R., Engelbrecht, E. & Härter, Jan Olaf Mirko, 16 Jan 2024, In: Journal of Geophysical Research: Atmospheres. 129, 1, 16 p., e2023JD040126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Biological Applications of Thermoplasmonics

    Thusgaard Ruhoff, Victoria, Arastoo, Mohammadreza, Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 6 Jan 2024, In: Nano Letters. 24, 3, p. 777-789 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Accepted/In press

    A comprehensive analysis of age of onset and cumulative incidence of mental disorders: A Danish register study

    Beck, C., Pedersen, C. B., Plana-Ripoll, O., Dalsgaard, Søren, Debost, J. C. P., Laursen, T. M., Musliner, K. L., Mortensen, P. B., Pedersen, Marianne, Petersen, L. V., Yilmaz, Z., McGrath, J. & Agerbo, E., 2024, (Accepted/In press) In: Acta Psychiatrica Scandinavica.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Alveolar cytokines and interferon autoantibodies in COVID-19 ARDS

    Jonassen, T. B., Jørgensen, S. E., Mitchell, N. H., Mogensen, T. H., Berg, Ronan Martin Griffin, Ronit, A. & Plovsing, Ronni Thermann Reitz, 2024, In: Frontiers in Immunology. 15, 9 p., 1353012.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms

    Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. 2023
  24. Published

    Evolutionary shaping of low-dimensional path facilitates robust and plastic switching between phenotypes

    Sakata, A. & Kaneko, Kunihiko, 26 Dec 2023, In: Physical Review Research. 5, 4, 19 p., 043296.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Thermodynamics of interacting systems: The role of the topology and collective effects

    Mamede, I. N., Proesmans, Karel Josef A & Fiore, C. E., 22 Dec 2023, In: Physical Review Research. 5, 4, 12 p., 043278.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The Precipitation Characteristics of Mesoscale Convective Systems Over Europe

    Da Silva, N. A. & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Journal of Geophysical Research: Atmospheres. 128, 23, 20 p., e2023JD039045.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The Role of Passive Cloud Volumes in the Transition From Shallow to Deep Atmospheric Convection

    Vraciu, C. V., Kruse, Irene Livia & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Geophysical Research Letters. 50, 23, 9 p., e2023GL105996.

    Research output: Contribution to journal › Letter › Research › peer-review

  28. Published

    Introducing the Automated Ligand Searcher

    Jacobsen, L., Hungerland, J., Bačić, V., Gerhards, L., Schuhmann, Fabian Johannes & Solov’yov, I. A., 11 Dec 2023, In: Journal of Chemical Information and Modeling. 63, 23, p. 7518-7528 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Prediction of cross-fitness for adaptive evolution to different environmental conditions: Consequence of phenotypic dimensional reduction

    Sato, T. U., Furusawa, C. & Kaneko, Kunihiko, 11 Dec 2023, In: Physical Review Research. 5, 4, 14 p., 043222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Solvable neural network model for input-output associations: Optimal recall at the onset of chaos

    Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Machine-learning vs. logistic regression for preoperative prediction of medical morbidity after fast-track hip and knee arthroplasty—a comparative study

    Michelsen, C., Jørgensen, C. C., Heltberg, Mathias Spliid, Jensen, Mogens Høgh, Lucchetti, Alessandra, Petersen, P. B., Petersen, T., Kehlet, Henrik, Madsen, F., Hansen, T. B., Gromov, Kirill, Jakobsen, T., Varnum, C., Overgaard, S., Andersen, Mikkel Rathsach & Hansen, L., 29 Nov 2023, In: BMC Anesthesiology. 23, 1, 12 p., 391.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Elasticity tunes mechanical stress localization around active topological defects

    Bonn, Lasse Frederik, Ardaševa, Aleksandra & Doostmohammadi, Amin, 28 Nov 2023, In: Soft Matter. 20, 1, p. 115-123 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The counterintuitive implications of superspreading diseases

    Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations

    Nonn, A., Kiss, B., Pezeshkian, Weria, Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Submitted

    Three-component Bose-Einstein condensates and wetting without walls

    Indekeu, J. O., Thu, N. V. & Berx, Jonas, 24 Sep 2023, (Submitted).

    Research output: Working paper › Preprint › Research

  36. Published

    Nudging cooperation among agents in an experimental social network

    Jensen, Gorm Gruner, Busch, M. B., Piovesan, Marco & Härter, Jan Olaf Mirko, 12 Sep 2023, In: Applied Network Science. 8, 1, 13 p., 62.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Dynamic Fluid Connectivity Controls Solute Dispersion in Multiphase Porous Media Flow

    Mathiesen, Joachim, Linga, G., Misztal, M., Renard, F. & Le Borgne, T., 28 Aug 2023, In: Geophysical Research Letters. 50, 16, 11 p., e2023GL105233.

    Research output: Contribution to journal › Letter › Research › peer-review

  38. Published

    On the Sensitivity of Convective Cold Pools to Mesh Resolution

    Fiévet, Romain Frédéric Sébastien, Meyer, B. & Härter, Jan Olaf Mirko, 25 Aug 2023, In: Journal of Advances in Modeling Earth Systems. 15, 8, 21 p., e2022MS003382.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Precision-dissipation trade-off for driven stochastic systems

    Proesmans, Karel Josef A, 24 Aug 2023, In: Communications Physics. 6, 1, 6 p., 226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Motility mediates satellite formation in confined biofilms

    Cordero, Mireia, Mitarai, Namiko & Jauffred, Liselotte, 17 Aug 2023, In: ISME Journal. 17, p. 1819-1827 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Extracellular matrix sensing via modulation of orientational order of integrins and F-actin in focal adhesions

    Grudtsyna, Valeriia, Packirisamy, S., Bidone, T. C. & Swaminathan, V., 10 Aug 2023, In: Life Science Alliance. 6, 10, 16 p., e202301898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Entropy of different phases formed by soft rods

    Chattopadhyay, Jayeeta, Lin, S. & Maiti, P. K., 3 Aug 2023, In: Journal of Chemical Physics. 159, 5, 11 p., 054503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Spontaneous flows and dynamics of full-integer topological defects in polar active matter

    Rønning, J., Renaud, J., Doostmohammadi, Amin & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Active topological defect absorption by a curvature singularity

    Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter

    Andersen, Benjamin Halager, Renaud-Mornant, J., Rønning, J., Angheluta, L. & Doostmohammadi, Amin, 14 Jun 2023, In: Physical Review Fluids. 8, 14 p., 063101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Editorial: Active and Intelligent Living Matter: from Fundamentals to Applications

    Doostmohammadi, Amin, Mazza, M. G., Shendruk, T. N. & Stark, H., 12 Jun 2023, In: Frontiers in Physics. 11, 2 p., 1231716.

    Research output: Contribution to journal › Editorial › Research › peer-review

  48. Published

    Tradeoff between speed and reproductive number in pathogen evolution

    Eilersen, Andreas Thomas, Nielsen, Bjarke Frost & Sneppen, Kim, 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Sustainable diversity of phage-bacteria systems

    Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Coupled oscillator cooperativity as a control mechanism in chronobiology

    Heltberg, Mathias Spliid, Jiang, Y., Fan, Y., Zhang, Z., Nielsen, Malthe Skytte Nordentoft, Lin, W., Qian, L., Ouyang, Q., Jensen, Mogens Høgh & Wei, P., 17 May 2023, In: Cell Systems. 14, 5, p. 382-391.e5 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Lateral Organization of Plasma Membrane Proteins Studied Using Thermoplasmonics

    Arastoo, Mohammadreza, 16 May 2023, Niels Bohr Institute ed. Copenhagen, Denmark: University of Copenhagen. 193 p.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    Direct chemical induction of hepatocyte-like cells with capacity for liver repopulation

    Bai, Y., Yang, Z., sgk681, sgk681, Ding, W., Qi, J., Liu, F., Wang, X., Zhou, B., Zhang, W., Zhuang, X., Li, G. & Zhao, Y., 1 May 2023, In: Hepatology. 77, 5, p. 1550-1565 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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