The UCSC Genome Browser Database: 2008 update.
Research output: Contribution to journal › Journal article › Research › peer-review
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The UCSC Genome Browser Database: 2008 update. / Karolchik, D; Kuhn, R M; Baertsch, R; Barber, G P; Clawson, H; Diekhans, M; Giardine, B; Harte, R A; Hinrichs, A S; Hsu, F; Kober, K M; Miller, W; Pedersen, Jakob Skou; Pohl, A; Raney, B J; Rhead, B; Rosenbloom, K R; Smith, K E; Stanke, M; Thakkapallayil, A; Trumbower, H; Wang, T; Zweig, A S; Haussler, D; Kent, W J.
In: Nucleic Acids Research, Vol. 36, No. Database issue, 2007, p. D773-9.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - The UCSC Genome Browser Database: 2008 update.
AU - Karolchik, D
AU - Kuhn, R M
AU - Baertsch, R
AU - Barber, G P
AU - Clawson, H
AU - Diekhans, M
AU - Giardine, B
AU - Harte, R A
AU - Hinrichs, A S
AU - Hsu, F
AU - Kober, K M
AU - Miller, W
AU - Pedersen, Jakob Skou
AU - Pohl, A
AU - Raney, B J
AU - Rhead, B
AU - Rosenbloom, K R
AU - Smith, K E
AU - Stanke, M
AU - Thakkapallayil, A
AU - Trumbower, H
AU - Wang, T
AU - Zweig, A S
AU - Haussler, D
AU - Kent, W J
PY - 2007
Y1 - 2007
N2 - The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.
AB - The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.
KW - Faculty of Science
KW - Animals
KW - Computer Graphics
KW - Databases
KW - Nucleic Acid
KW - Genomics
KW - Humans
KW - Internet
KW - Invertebrates
KW - Sequence Alignment
KW - User-Computer Interface
KW - Variation (Genetics)
KW - Vertebrates
U2 - 10.1093/nar/gkm966
DO - 10.1093/nar/gkm966
M3 - Journal article
C2 - 18086701
VL - 36
SP - D773-9
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - Database issue
ER -
ID: 4960251