Biocomplexity

  1. 2005
  2. Published

    Novel optical and statistical methods reveal colloid-wall interactions inconsistent with DLVO and Lifshitz theories

    Bendix, Poul Martin, Dreyer, J. K. K., Ferkinghoff-Borg, J. & Oddershede, L. B., 2005, In: Journal of Colloid and Interface Science. 287, 2, p. 561-571

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Optical trapping inside living organisms

    Bendix, Poul Martin & Oddershede, L. B., 2005, In: SPIE Proceedings. 5930, 9 p., 593003.

    Research output: Contribution to journalConference articleResearchpeer-review

  4. Published

    Vild med lys

    Bendix, Poul Martin, Madsen, T. W. & Oddershede, L. B., 2005, In: Kvant. 2005, 4, p. 14-17 4 p.

    Research output: Contribution to journalJournal articleCommunication

  5. Published

    Branching instabilities in rapid fracture: Dynamics and geometry

    Bouchbinder, E., Mathiesen, Joachim & Procaccia, I., 1 May 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 71, 5, 056118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Coherent pion production in heavy ion charge exchange reactions.

    Boyard, J., Augustyniak, W., Dahl, R., Drews, M., Ellegaard, Clive Sigurd, Farhi, L., Gaarde, C., Hennino, T., Jensen, J., Jourdain, J., Kagarlis, M., Kunne, R., Larsen, J., Radvadyi, P., Ramstein, B., Roy-Stephan, M. & Zupranski, P., 13 Jun 2005, In: Nuclear Physics A: Nuclear and Hadronic Physics. 755, p. 507C-510C

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    A certain localization effect in coupled systems and messages from the crystal sphere

    Guhr, T., Gronqvist, J., Søndergaard, N., Oxborrow, M., Schaadt, K. & Ellegaard, Clive Sigurd, 23 Oct 2005, In: AIP Conference Proceedings. 777, p. 160-170

    Research output: Contribution to journalConference articleResearchpeer-review

  8. Published

    Spiky oscillations in NF-KB signalling

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    The stability of solitons in biomembranes and nerves

    Lautrup, B., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2005, In: arXiv.org: Physics. arXiv:Physics/0510106, 7 p.

    Research output: Contribution to journalJournal articleResearch

  10. Published

    Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow

    Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Universality of rescaled curvature distributions

    Pato, M., Schaadt, K., Tufaile, A., Ellegaard, Clive Sigurd, Nogueira, T. & Sartorelli, J., 1 Mar 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 3, p. 037201

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Networks and Cities: An Information Perspective

    Rosvall, M., Trusina, Ala, Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review Letters. 94, 2, 028701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Sand ripples under water with complex wave motion

    Scheibye-Knudsen, K., Ellegaard, Clive Sigurd, Bundgaard, F. & Sams, T., 1 Jul 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, 1, 016209.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Domain size and fluctuations at domain interfaces in lipid mixtures

    Seeger, H., Fidorra, M. & Heimburg, Thomas Rainer, 2005, In: Biocolloids. 219, p. 85-96

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Hide-and-seek on complex networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Mar 2005, In: EPL. 69, 5, p. 853-859

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Measuring information networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Jun 2005, In: Pramana – Journal of Physics. 64, 6, p. 1121-1125

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. 2004
  18. Published

    A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA

    Andersen, T., Porse, Bo Torben & Kirpekar, F., 1 Jun 2004, In: RNA. 10, 6, p. 907-913 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Quantifying the benefits of translation regulation in the unfolded protein response

    Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Roughening of fracture surfaces: The role of plastic deformation

    Bouchbinder, E., Mathiesen, Joachim & Procaccia, I., 18 Jun 2004, In: Physical Review Letters. 92, 24, 246101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Stress field around arbitrarily shaped cracks in two-dimensional elastic materials

    Bouchbinder, E., Mathiesen, Joachim & Procaccia, I., 1 Feb 2004, In: Physical Review E. 69, 2 2, 026127.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Pattern formation of underwater sand ripples with a skewed drive

    Bundgaard, F., Ellegaard, Clive Sigurd, Scheibye-Knudsen, K., Bohr, T. & Sams, T., 1 Dec 2004, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 70, 6, 066207.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Improved axial position detection in optical tweezers measurements

    Dreyer, J. K., Berg-Sørensen, K. & Oddershede, L., 2004, In: Applied Optics. 43, 10, p. 1991-5 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Diffusion in two-component lipid membranes- a fluorescence correlation spectroscopy

    Hac, A., Segger, H., Fidorra, M. & Heimburg, Thomas Rainer, 2004, In: Biophysical Journal. 88, p. 317-333

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Selection by pairwise comparisons with limited resources

    Laureti, P., Mathiesen, Joachim & Zhang, Y. C., 15 Jul 2004, In: Physica A: Statistical Mechanics and its Applications. 338, 3-4, p. 596-604 9 p.

    Research output: Contribution to journalReviewResearchpeer-review

  26. Published

    Dynamics of crystal formation in the Greenland NorthGRIP ice core

    Mathiesen, Joachim, Ferkinghoff-Borg, J., Jensen, Mogens Høgh, Levinsen, Mogens, Olesen, Poul, Dahl-Jensen, Dorthe & Svensson, Anders, 2004, In: Journal of Glaciology. 50, 170, p. 325-328 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Self-organization of structures and networks from merging and small-scale fluctuations

    Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Linear stability analysis of rapid granular flow down a slope and density wave formation

    Mitarai, Namiko & Nakanishi, H., 25 May 2004, In: Journal of Fluid Mechanics. 507, p. 309-334

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Counting function for a sphere of anisotropic quartz

    Sondergaard, N., Guhr, T., Oxborrow, M., Schaadt, K. & Ellegaard, Clive Sigurd, 1 Sep 2004, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 70, 3, 036206.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Hierarchy measures in complex networks

    Trusina, Ala, Maslov, S., Minnhagen, P. & Sneppen, Kim, 30 Apr 2004, In: Physical Review Letters. 92, 17, 178702.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. 2003
  32. Published

    Experiment and model for the dynamics of vortex ripples in sand

    Abel, M., Andersen, K. H., Ellegaard, Clive Sigurd, Krug, J., Søndergaard, L. R. & Udesen, J., 1 Apr 2003, In: AIP Conference Proceedings. 676, p. 171-181

    Research output: Contribution to journalConference articleResearchpeer-review

  33. Published

    The anatomy of a bathtub vortex

    Andersen, A., Bohr, T., Stenum, B., Juul Rasmussen, J. & Lautrup, B. E., 2003, In: Physical Review Letters. 91, 10, p. 104502

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Single-cell Analysis of Lambda Immunity Regulation

    Bæk, K. T., Svenningsen, Sine Lo, Eisen, H., Sneppen, Kim & Brown, Stanley, 2003, In: Journal of Molecular Biology. 334, 3, p. 363-372 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Prisoners' dilemma in real-world acquaintance networks: Spikes and quasiequilibria induced by the interplay between structure and dynamics

    Holme, P., Trusina, Ala, Kim, B. & Minnhagen, P., Sep 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 68, 3

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Scaling exponent of the maximum growth probability in diffusion-limited aggregation

    Jensen, Mogens Høgh, Mathiesen, Joachim & Procaccia, I., 1 Jan 2003, In: Physical Review E. 67, 4, 1 p., 042402.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Hard-sphere limit of soft-sphere model for granular materials: Stiffness dependence of steady granular flow

    Mitarai, Namiko & Nakanishi, H., 19 Feb 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 67, 2, 021301.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Stability analysis of collisional granular flow on a slope

    Mitarai, Namiko & Nakanishi, H., 30 Sep 2003, In: International Journal of Modern Physics B. 17, 22-24 II, p. 4290-4294 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Investigation of the mobility of liquid nano-inclusions of lead in crystalline aluminum with dislocations

    Prokofjev, S., Zhilin, V., Johnson, Erik, Levinsen, Mogens & Dahmen, U., 2003, Proceedings of fifth International Conference. p. 487-496

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  40. Published

    2H(3He, t)2p reaction at 2 GeV

    Ramstein, B., Mosbacher, C., Hennino, T., Augustyniak, W., Bachelier, D., Bohlen, H. G., Boyard, J. L., Dahl, R. & Ellegaard, Clive Sigurd, 1 Apr 2003, In: European Physical Journal A. 16, 4, p. 583-597

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Chaotic sound waves in a regular billiard

    Schaadt, K., Tufaile, A. & Ellegaard, Clive Sigurd, 1 Feb 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 67, 2, Part 2, 026213.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Experiments on elastomechanical wave functions in chaotic plates and their statistical features

    Schaadt, K., Guhr, T., Ellegaard, Clive Sigurd & Oxborrow, M., 1 Sep 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 68, 3, 036205.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. 2002
  44. Published

    Pattern dynamics of vortex ripples in sand: Nonlinear modeling and experimental validation

    Andersen, K., Abel, M., Krug, J., Ellegaard, Clive Sigurd, Sondergaard, L. & Udesen, J., 10 Jun 2002, In: Physical Review Letters. 88, 23, 234302.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Thermodynamics of proteins: Fast folders and sharp transitions

    Bakk, A., Dommersnes, P. G., Hansen, A., Høye, J. S., Sneppen, Kim & Jensen, Mogens Høgh, 1 Jan 2002, In: Computer Physics Communications. 147, 1-2, p. 307-312 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Multifractal structure of the harmonic measure of diffusion-limited aggregates

    Jensen, Mogens Høgh, Levermann, A., Mathiesen, Joachim & Procaccia, I., 1 Jan 2002, In: Physical Review E. 65, 4, 1 p., 046109.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Dynamic instabilities induced by asymmetric influence: Prisoners' dilemma game in small-world networks

    Kim, B., Trusina, Ala, Holme, P., Minnhagen, P., Chung, J. & Choi, M., Aug 2002, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 66, 2, 021907.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Tip Splittings and Phase Transitions in the Dielectric Breakdown Model: Mapping to the Diffusion-Limited Aggregation Model

    Mathiesen, Joachim & Jensen, Mogens Høgh, 1 Jan 2002, In: Physical Review Letters. 88, 23, 1 p., 235505.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Collisional granular flow as a micropolar fluid

    Mitarai, Namiko, Hayakawa, H. & Nakanishi, H., 29 Apr 2002, In: Physical Review Letters. 88, 17, 174301.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    The Motion of a Single Molecule, the Lambda-Receptor, in the Bacterial Outer Membrane

    Oddershede, L., Dreyer, J. K., Grego, S., Brown, Stanley & Berg-Sørensen, K., 2002, In: Biophysical Journal. 83, 6, p. 3152-61 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. 2001
  52. Published

    Random matrix theory and acoustic resonances in plates with an approximate symmetry

    Andersen, A., Ellegaard, Clive Sigurd, Jackson, Andrew D. & Schaadt, K., 1 Jun 2001, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 63, 6, 066204.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Analysis of the complete DNA sequence of the temperate bacteriophage TP901-1: evolution, structure, and genome organization of lactococcal bacteriophages

    Brøndsted, L., Østergaard, S., Pedersen, M., Hammer, K. & Vogensen, F. K., 25 Apr 2001, In: Virology. 283, 1, p. 93-109 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    An activator of transcription regulates phage TP901-1 late gene expression

    Brøndsted, L., Pedersen, M. & Hammer, K., 1 Dec 2001, In: Applied and Environmental Microbiology. 67, 12, p. 5626-2633 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Thermodynamic formalism of the harmonic measure of diffusion limited aggregates: Phase transition

    Davidovitch, B., Jensen, Mogens Høgh, Levermann, A., Mathiesen, Joachim & Procaccia, I., 2 Oct 2001, In: Physical Review Letters. 87, 16, 164101.

    Research output: Contribution to journalJournal articleResearchpeer-review