Weria Pezeshkian
Assistant Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- 2024
- Published
Mesoscale simulation of biomembranes with FreeDTS
Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bending of a lipid membrane edge by annexin A5 trimers
Pandey, M. P., Telles de Souza, P. C., Pezeshkian, Weria & Khandelia, H., 2024, In: Biophysical Journal. 123, 8, p. 1006-1014 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations
Nonn, A., Kiss, B., Pezeshkian, Weria, Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling
Pezeshkian, Weria, Grunewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J. & Korkin, D., 6 Apr 2023, In: Structure. 31, 4, p. 492-50 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mesoscale simulations: an indispensable approach to understand biomembranes
Duncan, A. & Pezeshkian, Weria, 21 Feb 2023, In: Biophysical Journal. 122, 11, p. 1883-1889 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms
Thusgaard Ruhoff, Victoria, Bendix, Poul Martin & Pezeshkian, Weria, 16 Jan 2023, In: Emerging topics in life sciences. 7, 1, p. 81-93 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Annexin proteins involved in plasma membrane repair reshape a membrane edge: Direct evidence from molecular simulations
Pandey, M. P., Pezeshkian, Weria & Khandelia, H., 2023, In: Biophysical Journal. 122, 3S1, p. 323a 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- 2022
- Published
Synthetic Membrane Shaper for Controlled Liposome Deformation
De Franceschi, N., Pezeshkian, Weria, Fragasso, A., Bruininks, B. M. H., Tsai, S., Marrink, S. J. & Dekker, C., 28 Nov 2022, In: ACS Nano. 17, p. 966-978 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Martini 3 Coarse-Grained Force Field for Carbohydrates
Grünewald, F., Punt, M. H., Jefferys, E. E., Vainikka, P., König, M., Virtanen, V., Meyer, T. A., Pezeshkian, Weria, Gormley, A., Karonen, M., Sansom, M. S. P., Souza, P. C. T. & Marrink, S., 7 Nov 2022, In: Journal of Chemical Theory and Computation. 18, 12, p. 7555-7569 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Strength in numbers: effect of protein crowding on the shape of cell membranes
Thusgaard Ruhoff, Victoria, Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria & Bendix, Poul Martin, 31 Oct 2022, In: Biochemical Society Transactions. 50, 5, p. 1257-1267 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coarse-grained simulations of curvature induced lipid sorting in complex membranes
Konig, M., Pezeshkian, Weria & Marrink, S. J., 2022, In: Biophysical Journal. 121, 3, p. 309A-309A 1 p.Research output: Contribution to journal › Conference article › Research › peer-review
- 2021
- Published
A synthetic membrane shaper for controlled liposome deformation
Pezeshkian, Weria, 23 Dec 2021, In: bioRxiv.Research output: Contribution to journal › Journal article › Research
- Published
Molecular architecture of SARS-CoV-2 envelope by integrative modeling
Pezeshkian, Weria, 15 Sep 2021, In: bioRxiv.Research output: Contribution to journal › Journal article › Research
Capturing Membrane Phase Separation by Dual Resolution Molecular Dynamics Simulations
Liu, Y., de Vries, A. H., Pezeshkian, Weria & Marrink, S. J., 14 Sep 2021, In: Journal of Chemical Theory and Computation. 17, 9, p. 5876-5884 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Simulating realistic membrane shapes
Pezeshkian, Weria & Marrink, S. J., 1 Aug 2021, In: Current Opinion in Cell Biology. 71, p. 103-111 9 p.Research output: Contribution to journal › Review › Research › peer-review
Computational Approaches to Explore Bacterial Toxin Entry into the Host Cell
Pezeshkian, Weria, Shillcock, J. C. & Ipsen, J. H., 28 Jul 2021, In: Toxins. 13, 7, 9 p., 449.Research output: Contribution to journal › Review › Research › peer-review
Long chain sphingomyelin depletes cholesterol from the cytoplasmic leaflet in asymmetric lipid membranes
Karlsen, M. L., Bruhn, D. S., Pezeshkian, Weria & Khandelia, H., 8 Jul 2021, In: RSC Advances. 11, 37, p. 22677-22682 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Ceramide structure dictates glycosphingolipid nanodomain assembly and function
Arumugam, S., Schmieder, S., Pezeshkian, Weria, Becken, U., Wunder, C., Chinnapen, D., Ipsen, J. H., Kenworthy, A. K., Lencer, W., Mayor, S. & Johannes, L., 16 Jun 2021, In: Nature Communications. 12, 1, 12 p., 3675.Research output: Contribution to journal › Journal article › Research › peer-review
Creasing of flexible membranes at vanishing tension
Pezeshkian, Weria & Ipsen, J. H., 16 Apr 2021, In: Physical Review E. 103, 4, 5 p., 041001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Annexin A4 trimers are recruited by high membrane curvatures in giant plasma membrane vesicles
Florentsen, C. D., Kamp-Sonne, A., Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria, Hakami Zanjani, A. A., Khandelia, H., Nylandsted, J. & Bendix, Poul Martin, 2021, In: Soft Matter. 17, 2, p. 308-318 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
Coupling Coarse-Grained to Fine-Grained Models via Hamiltonian Replica Exchange
Liu, Y., Pezeshkian, Weria, Barnoud, J., de Vries, A. H. & Marrink, S. J., 11 Aug 2020, In: Journal of Chemical Theory and Computation. 16, 8, p. 5313-5322 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Dual Resolution Membrane Simulations Using Virtual Sites
Liu, Y., De Vries, A. H., Barnoud, J., Pezeshkian, Weria, Melcr, J. & Marrink, S. J., 14 May 2020, In: Journal of Physical Chemistry B. 124, 19, p. 3944-3953 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Backmapping triangulated surfaces to coarse-grained membrane models
Pezeshkian, Weria, Konig, M., Wassenaar, T. A. & Marrink, S. J., 8 May 2020, In: Nature Communications. 11, 1, 9 p., 2296.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
Fluctuations and conformational stability of a membrane patch with curvature inducing inclusions
Pezeshkian, Weria & Ipsen, J. H., 28 Dec 2019, In: Soft Matter. 15, 48, p. 9974-9981 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
A Multi-Scale Approach to Membrane Remodeling Processes
Pezeshkian, Weria, Konig, M., Marrink, S. J. & Ipsen, J. H., 23 Jul 2019, In: Frontiers in Molecular Biosciences. 6, 7 p., 59.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
Clustering on Membranes: Fluctuations and More
Johannes, L., Pezeshkian, Weria, Ipsen, J. H. & Shillcock, J. C., May 2018, In: Trends in Cell Biology. 28, 5, p. 405-415 11 p.Research output: Contribution to journal › Review › Research › peer-review
Lipid Configurations from Molecular Dynamics Simulations
Pezeshkian, Weria, Khandelia, H. & Marsh, D., 24 Apr 2018, In: Biophysical Journal. 114, 8, p. 1895-1907 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
The role of caveolin-1 in lipid droplets and their biogenesis
Pezeshkian, Weria, Chevrot, G. & Khandelia, H., Mar 2018, In: Chemistry and Physics of Lipids. 211, p. 93-99 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
Cholera toxin B subunit induces local curvature on lipid bilayers
Pezeshkian, Weria, Nabo, L. J. & Ipsen, J. H., Nov 2017, In: FEBS Open Bio. 7, 11, p. 1638-1645 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Membrane Tubulation in Lipid Vesicles Triggered by the Local Application of Calcium Ions
Doosti, B. A., Pezeshkian, Weria, Bruhn, D. S., Ipsen, J. H., Khandelia, H., Jeffries, G. D. M. & Lobovidna, T., 17 Oct 2017, In: Langmuir. 33, 41, p. 11010-11017 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Mechanism of Shiga Toxin Clustering on Membranes
Pezeshkian, Weria, Gao, H., Arumugam, S., Becken, U., Bassereau, P., Florent, J., Ipsen, J. H., Johannes, L. & Shillcock, J. C., 1 Jan 2017, In: ACS Nano. 11, 1, p. 314-324 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
Membrane invagination induced by Shiga toxin B-subunit: from molecular structure to tube formation
Pezeshkian, Weria, Hansen, A. G., Johannes, L., Khandelia, H., Shillcock, J. C., Kumar, P. B. S. & Ipsen, J. H., 2016, In: Soft Matter. 12, 23, p. 5164-5171 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
The effects of globotriaosylceramide tail saturation level on bilayer phases
Pezeshkian, Weria, Chaban, V. V., Johannes, L., Shillcock, J., Ipsena, J. H. & Khandelia, H., 2015, In: Soft Matter. 11, 7, p. 1352-1361 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
Distribution of counterions and interaction between two similarly charged dielectric slabs: Roles of charge discreteness and dielectric inhomogeneity
Pezeshkian, Weria, Nikoofard, N., Norouzi, D., Mohammad-Rafiee, F. & Fazli, H., 28 Jun 2012, In: Physical Review E. 85, 6, 11 p., 061925.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 290302154
Most downloads
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44
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Strength in numbers: effect of protein crowding on the shape of cell membranes
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
21
downloads
Annexin A4 trimers are recruited by high membrane curvatures in giant plasma membrane vesicles
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
18
downloads
Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms
Research output: Contribution to journal › Journal article › Research › peer-review
Published