Kim Sneppen
Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- 2009
- Published
Dominant negative autoregulation limits steady-state repression levels in gene networks
Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic features of gene expression control by small regulatory RNAs
Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of the recovery from sRNA-mediated gene silencing
Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
Dynamics of uptake and metabolism of small molecules in cellular response systems
Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: P L o S One. 4, 3, p. e4923Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of uptake and metabolism of small molecules in cellular response systems
Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability
Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling proteasome dynamics in Parkinson's disease
Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pathway identification by network pruning in the metabolic network of Escherichia coli
Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reinforced communication and social navigation generate groups in model networks
Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli
Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Why do phage play dice?
Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Dynamical analysis on gene activity in the presence of repressors and an interfering promoter
Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182Research output: Contribution to journal › Journal article › Research › peer-review
- Published
One hub-one process: a tool based view on regulatory network topology
Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cost and capacity of signaling in the Escherichia coli proetin reaction network
Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamical genetic regulation
Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).Research output: Book/Report › Book › Research › peer-review
- Published
Gene duplication models for directed networks with limits on growth
Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Komolgorov scaling from random force fields
Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Oscillations and temporal signalling in cells
Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization
Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Signalling and Feedback in Biological Networks
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- 2007
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 26 Dec 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 52, p. 20815-9 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819Research output: Contribution to journal › Conference article › Research › peer-review
ID: 10093
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
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