Masters theses - Biocomplexity and Biophysics – Niels Bohr Institute

2024.01.17

Patrizio Cugia di Sant'Orsola

Title: Statistical Analyses of Multicellular Active Trajectories

Supervisor: Amin Doostmohammadi

2023.09.10

Ariel Avanzi

Title: Mechanics of multi-layer cellular system

Supervisor: Amin Doostmohammadi

2023.08.15

Mikkel Peter Andersen

Title: Thermodynamics and optimal control of active systems

Supervisor: Karel Proesmans

2023.07.07

Huiling Wang

Title: The control of quantized conduction events in lipid membranes by anesthetics

Supervisor: Thomas Heimburg

2023.06.13

Nathánaël van den Berg

Title: Experimental study of bacterial cell shape's role in competition: elongated cells win in expanding mixed communities

Supervisors: Liselotte Jauffred, Namiko Mitarai

2023.06.06

Morten Ulrik Hvid

Title: Bacteriophage Lysis Inhibition - A Modeling Approach

Supervisor: Namiko Mitarai

2023.06.01

Haochun Sun

Title: Three-Dimensional Modeling of Active Cell Assemblies

Supervisor: Amin Doostmohammadi

2022.08.09

Hazal Polat

Title: Investigation of Poly-aneuploid cancer cells motility in 3D

Supervisors: Liselotte Jauffred, Veneta Gerganova

2022.05.31

Chun Lung Johnny Tong

Title: Modelling Bacteriophage Communication Strategies

Supervisor: Namiko Mitarai

2022.05.20

Lars Erik Johnsen Skjegstad

Title: Computational Nucleosome Dynamics in 3D - Epigenetic Switching and Pressure Potential Effects

Supervisors: Kim Sneppen, Julius Bier Kirkegaard

2022.05.20

Markus Hofer

Title: Ecosystems of Sessile Species in Inhomogeneous Environments

Supervisor: Kim Sneppen

2022.05.20

Lasse Frederik Bonn

Title: Fluctuation-induced motility of topological defects

Supervisor: Amin Doostmohammadi

2022.05.20

Michael Forsmann

Title: Regulatory Gene-Gene networks based on regression trees

Supervisor: Ala Trusina

2022.05.20

Paula Melero Martinez

Title: Application of non-invasive MR imaging for the mouse brain water mobility and content assessment

Supervisors: Liselotte Jauffred, Ryszard S. Gomolka, Yuki Mori

2022.02.15

Salik Ahmad Sultan

Title: Activity induced Patterns in Active Matter

Supervisor: Amin Doostmohammadi

2022.02.10

Andreas Eilersen

Population dynamics and diseases

Supervisor: Kim Sneppen

2022.01.03

Nikka Mosleh

Title: Elastic objects ejected from harmonic plate

Supervisor: Joachim Mathiesen

2021.12.02

Simon Ulrik Hilbard

Title: Diffusion of toxins out of medical devices - Comparing analytical and numerical models

Supervisor: Joachim Mathiesen

2021.11.01

Victoria Thusgaard Ruhoff

Title: Assessment of Crowding by Viral Spike Protein Neuraminidase as a Potential Driver for Membrane Budding

Supervisors: Pól Martin Bendix

2021.11.01

Mirjam Partovi Dilami

Title: Agent Based Modelling of Companies in a Globalized Market

Supervisor: Kim Sneppen

2021.10.29

Silja Borring Låstad

Title: Survival tactics of a microscopic enemy

Supervisor: Namiko Mitarai

2021.08.31

Emilie Kok

Title: Transport of novel peptides across the intestinal barrier

Supervisors: Arjen Weller, Jannik Larsen, Andrew Urquhart, Poul Martin Bendix

2021.08.30

Alba Garcia Vazquez

Title: Planet Earth-like patterns in three-dimensional multi-species bacterial colonies

Supervisor: Liselotte Jauffred

2021.08.16

Reyk Börner

Modeling diurnal sea surface warming in the tropical ocean

Supervisor: Jan O. Haerter, Romain Fiévet, Peter Ditlevsen

2021.08.15

Anastassia Vybornova

Title: Identifying and classifying gaps in the bicycle network of Copenhagen

Supervisors: Kim Sneppen, Astrid Guhnemann, Michael Szell

2021.08.02

Johan Fridrik Kjølbro

Title: Cold Pools & Convective Organization

Supervisor: Jan Olaf Mirko Harter

2021.07.30

Liv Moretto Sørensen

Title: Period variations in the p53 network after protein inhibition

Supervisors: Mogens Høgh Jensen, Mathias Luidor Heltberg

2021.07.28

Maria Cristina Pires Clérigo

Title: MED24, a tail component of the Mediator complex, links FGF/ERK signaling to nuclear receptor engagement

Supervisors: Ala Trusina, Joshua Brickman

2021.07.27

Gidega Vijayakumar

Title: Multiparametric quantification of tissue integrity in the knee using MRI

Supervisors: Bryan Haddock, Lise Arleth

2021.07.20

Dana Taylor Kamp

Title: Numerical solutions to the self-contained soliton model - and the potential connection between the soliton theory and lithium treatment in bipolar disorder

Supervisor: Thomas Heimburg

2021.05.31

Miguel Garrido Zornoza

Title: Effects of Diffusion-limited Aggregation on Bacterial Systems

Supervisor: Namiko Mitarai

2021.05.31

Mireia Cordero Sánchez

Title: Study of three-dimensional bacterial colonies: how expression of motility and adhesion factors control colony morphology

Supervisor: Liselotte Jauffred, Namiko Mitarai

2021.05.20

Maria Tangen Søgaard

Title: Effect of Tumor Extracellular Matrix on T cell Activity

Supervisors: Ala Trusina, Daniel H. Madsen, Signe Z. Ingvarsen

2021.05.20

Fynn Wolf

Title: Modeling of the euglycemic hyperinsulinemic clamp experiment using Bayesian inference

Supervisors: Ala Trusina, Kristian Moss Bendtsen

2021.05.20

Andreas Berglund

Title: Batch Noise & Gene/Gene Correlations in Single Cell RNA Sequencing Data

Supervisors: Ala Trusina, Alexander Valentin Nielsen

2021.05.20

Louise Marie Krogsgaard Madsen

Title: Coupling dynamics of membrane bending proteins for COPII vesicle formation

Supervisor: Ala Trusina

2021.04.01

Martin Møller Larsen

Title: The Shape Of Three Dimensional Bacterial Colonies

Supervisors: Liselotte Jauffred, Namiko Mitarai

2021.03.30

Alisa Agafonova

Title: Structural properties and expression pattern of evolved Boolean networks

Supervisor: Kim Sneppen

2020.09.30

Marc Plana Caballero

Mesoscopic chemical clocks in coupled compartments

Supervisors: Mogens H. Jensen and Mathias Heltberg

2020.09.30

Nicola Garlet

Title: Population dynamics of viruses and defective interfering particles

Supervisor: Namiko Mitarai

2020.08.31

Thomas Langemark Trojahn

Emergent Growth of Intestinal Organoid Crypts from Novel Cell-Polarity Model

Supervisor: Ala Trusina

2016.08.05

Mads Holst Aagaard Madsen

A Direct Numerical Simulation study of transitional turbulence using the Finite Element Method

Supervisor: Joachim Mathiesen, Associate Professor
Co-Supervisor: Gaute Linga, PhD-fellow

2016.06.05

Aske Krogsgaard

Physics of nerves: Actionpotentials in Lumbricus Terrestrisaxons in the presence of anaesthetics and the collision of pulses

Supervisor: Thomas Rainer Heimburg

2016.05.31

Tea Muzic

The effect of Anesthetics on Phase Transitions in Biological Membranes

Supervisor: Thomas Rainer Heimburg

2015.11.25

Fatma Tounsi

THE CORRELATION BETWEEN CRITICAL ANAESTHETIC DOSE AND MELTING TEMPERATURES IN SYNTHETIC MEMBRANES

Supervisor: Thomas Rainer Heimburg

2015.02.20

Ajmal Faizi

Building a Fluorescence Correlation Spectroscopy Setup

Supervisor: Thomas Rainer Heimburg

2014.03.31

Søren Nissen

A Study of Solitons in Biological Membranes and Neurons

Supervisor: Thomas Rainer Heimburg

2014.03.31

Frederik Becher

The Relation Between Enthalpy And Volume Change

Supervisor: Thomas Rainer Heimburg

2013.07.31

Stanislav Landa

Influence of voltage on phase behaviour of membranes

Supervisor: Thomas Rainer Heimburg

2013.05.31

Karis Amata Zecchi

Electro-mechanical properties of lipid membranes at their phase transition

Supervisor: Thomas Rainer Heimburg

2011.11.14

SØREN BLOK MADSEN

Thermodynamics of nerves

2011.11.03

Lars Dalskov Mosgaard

Propagation of Sound in Lipid Membranes

Supervisor: Thomas Rainer Heimburg

2011.10.01

Louise Revsbech Winther

Hydration and mobility of trehalose in aqueous solution

Supervisor: Thomas Rainer Heimburg

2010.12.20

Rolf Justesen Pedersen

Electrophysiological measurements of spontaneous action potentials in craysh nerve in relation to the soliton model

Supervisor: Thomas Rainer Heimburg

2010.12.14

Katrine Rude Laub

Ion Channels With and Without the Presence of Proterins

Supervisor: Thomas Rainer Heimburg

2010.11.03

Klaus Bruun Pedersen

Pore theory in pure lipid membranes

Supervisor: Thomas Rainer Heimburg

2009.06.09

Morten Karlsen

The Effect of Non-Ionic Surfactants on the Potentiometric Response of Ion Selective Electrodes

Supervisor: Thomas Rainer Heimburg

2008.12.19

Kaare Græsbøll

Influence of Anesthetics on the Nerve Membrane and the Nerve Pulse

Supervisor: Thomas Rainer Heimburg

2008.12.19

Asger Tønnesen

Electric Gradient Field Applied to Lipid Monolayers

Supervisor: Thomas Rainer Heimburg

2008.06.19

Katarzyna Wodzinska

Pores in lipid membranes and the effect of anaesthetics

Supervisor: Thomas Rainer Heimburg

2007.08.17

Marie Lundgaard Guðmundsson

Phase behaviour in lipid tethers and vesicles - a thermodynamic study

Supervisor: Thomas Rainer Heimburg

2007.08.02

Andreas Blicher

Permeability studies of lipid vesicles by Fluorescence Correlation Spectroscopy and Monte Carlo simulations

Supervisor: Thomas Rainer Heimburg

2007.02.17

Marie Domange Jordö

The temperature dependence of the elasticity of giant lipid vesicles: An Optical Tweezers, Callorimetry and Confocal Microscopy study

Supervisor: Thomas Rainer Heimburg

Niels Bohr Institute

Masters theses - Biocomplexity and Biophysics

Patrizio Cugia di Sant'Orsola

Ariel Avanzi

Mikkel Peter Andersen

Huiling Wang

Nathánaël van den Berg

Morten Ulrik Hvid

Haochun Sun

Hazal Polat

Chun Lung Johnny Tong

Lars Erik Johnsen Skjegstad

Markus Hofer

Lasse Frederik Bonn

Michael Forsmann

Paula Melero Martinez

Salik Ahmad Sultan

Andreas Eilersen

Nikka Mosleh

Simon Ulrik Hilbard

Victoria Thusgaard Ruhoff

Mirjam Partovi Dilami

Silja Borring Låstad

Emilie Kok

Alba Garcia Vazquez

Reyk Börner

Anastassia Vybornova

Johan Fridrik Kjølbro

Liv Moretto Sørensen

Maria Cristina Pires Clérigo

Gidega Vijayakumar

Dana Taylor Kamp

Miguel Garrido Zornoza

Mireia Cordero Sánchez

Maria Tangen Søgaard

Fynn Wolf

Andreas Berglund

Louise Marie Krogsgaard Madsen

Martin Møller Larsen

Alisa Agafonova

Marc Plana Caballero

Nicola Garlet

Thomas Langemark Trojahn

Mads Holst Aagaard Madsen

Aske Krogsgaard

Tea Muzic

Fatma Tounsi

Ajmal Faizi

Søren Nissen

Frederik Becher

Stanislav Landa

Karis Amata Zecchi

SØREN BLOK MADSEN

Lars Dalskov Mosgaard

Louise Revsbech Winther

Rolf Justesen Pedersen

Katrine Rude Laub

Klaus Bruun Pedersen

Morten Karlsen

Kaare Græsbøll

Asger Tønnesen

Katarzyna Wodzinska

Marie Lundgaard Guðmundsson

Andreas Blicher

Marie Domange Jordö

Bsc - Msc - Phd theses

Bsc - Msc - Phd theses

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