Kim Sneppen

Kim Sneppen

Professor


  1. Published

    Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability

    Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Modeling rises and falls in money addicted social hierarchies

    Dybiec, B., Mitarai, Namiko & Sneppen, Kim, 2014, In: Physica Scripta. 89, 8, 085002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Modeling self-organization of communication and topology in social networks

    Rosvall, M. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 1, p. 016108

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Modeling the two-hybrid detector: Experimental bias on protien interaction networks

    Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Modelling transcriptional interference and DNA looping in gene regulation

    Dodd, I. B., Shearwin, K. & Sneppen, Kim, 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Modelling value bubbles in an attention based economy

    Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Models of life: epigenetics, diversity and cycles

    Sneppen, Kim, 1 Apr 2017, In: Reports on Progress in Physics. 80, 4, 042601.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Models of life: Dynamics and regulation in biological systems

    Sneppen, Kim, 5 Oct 2014, Cambridge University Press ed. Cambridge. 342 p.

    Research output: Book/ReportBookResearchpeer-review

  11. Published

    Morphological Instabilities in a growing Yeast Colony: Experiment and Theory

    Sams, T., Jensen, Mogens Høgh, Sneppen, Kim, Christensen, B., Ellegaard, Clive Sigurd & Thrane, U., 14 Jul 1997, In: Physical Review Letters. 79, 2, p. 313-316

    Research output: Contribution to journalJournal articleResearch

  12. Published

    Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model

    Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Multistability with a Metastable Mixed State

    Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Nanog, Oct4 and Tet1 interplay in establishing pluripotency

    Olariu, V., Lövkvist, Cecilia & Sneppen, Kim, 5 May 2016, In: Scientific Reports. 6, 25438.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Navigating netwoks with limited information

    Rosvall, M., Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 6, p. 066111

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Need, greed and noise: competing strategies and in a trading model

    Donangelo, R., Hansen, A., Sneppen, Kim & Souza, S. R., 2005, In: Physica A: Statistical Mechanics and its Applications. 348, p. 496-504

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Network models of phage-bacteria coevolution

    Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Networks and Cities: An Information Perspective

    Rosvall, M., Trusina, Ala, Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review Letters. 94, 2, 028701.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Networks and our limited information horizon

    Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Nucleation and spreading of a heterochromatic domain in fission yeast

    Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Nucleosome dynamics and maintenance of epigenetic states of CpG islands

    Sneppen, Kim & Dodd, I. B., 28 Jun 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 6, 062417.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Occlusion of the ribosome binding site connects the translational initiation frequency, mRNA stability and premature transcription termination

    Eriksen, M., Sneppen, Kim, Pedersen, Steen & Mitarai, Namiko, 14 Mar 2017, In: Frontiers in Microbiology. 8, 7 p., 362.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    On Phage Adsorption to Bacterial Chains

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Optimal Transport Flows for Distributed Production Networks

    Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Organizational structure and communication networks in a university environment

    Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Oscillating gene expressions in regulatory network: Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology

    Jensen, Mogens Høgh, Sneppen, Kim & Tiana, G., 2005, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. 160, p. 195-202

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control

    Sneppen, Kim, Nielsen, Bjarke Frost, Taylor, R. J. & Simonsen, L., 6 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 6 p., 2016623118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Pancreatic alpha and beta cells are globally phase-locked

    Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Pathway identification by network pruning in the metabolic network of Escherichia coli

    Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Phage and bacteria support mutual diversity in a narrowing staircase of coexistence

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Physics in Molecular Biology

    Sneppen, Kim & Zocchi, G., 2005, UK: Cambridge University Press. 319 p.

    Research output: Book/ReportBookResearch

  34. Published

    Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli

    Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

    Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Profit Profiles in Correlated Markets

    Sneppen, Kim, 2002, In: Physica B: Condensed Matter. vol. A 316, p. 561-567

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Protection of bacteriophage-sensitive Escherichia coli by lysogens

    Brown, Stanley, Mitarai, Namiko & Sneppen, Kim, 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Protein Interaction Networks Beyond Artifacts

    Sneppen, Kim, 2002, In: FEBS. vol. 530, p. 255-256

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Protein Localization with Flexible DNA or RNA

    Bernhardsson, P. J. S., Mitarai, Namiko & Sneppen, Kim, 10 Feb 2012, In: PLoS.ONE.. 7, 2, p. e29218

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Quality control system response to stochastic growth of amyloid fibrils

    Pigolotti, S., Lizana, L., Sneppen, Kim & Otzen, D., 2 May 2013, In: F E B S Letters. 587, 9, p. 1405-1410 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Quantifying the benefits of translation regulation in the unfolded protein response

    Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Reinforced communication and social navigation generate groups in model networks

    Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli

    Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator

    Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, Leila, Sneppen, Kim, Hammer, K. & Kilstrup, M., 26 May 2020, In: Scientific Reports. 10, 1, 13 p., 8659.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Restriction modification systems as engines of diversity

    Sneppen, Kim, Semsey, S., Seshasayee, A. S. N. & Krishna, S., 2 Jun 2015, In: Frontiers in Microbiology. 6, 528.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Robustness of the Right Operator in Bacteriophage µ

    Metzler, R., Bakk, A. & Sneppen, Kim, 2004, In: Biophysical Journal. 86, p. 58-66

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    SARS-CoV-2 superspreading in cities vs the countryside

    Eilersen, Andreas Thomas & Sneppen, Kim, 23 Feb 2021, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 129, 7, p. 401-407 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 10093