Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences
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Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences. / Karlskov-Mortensen, Peter; Hu, Z.L.; Gorodkin, Jan; Reecy, J.M.; Fredholm, Merete.
In: Animal Genetics, Vol. 38, No. 4, 2007, p. 401-405.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences
AU - Karlskov-Mortensen, Peter
AU - Hu, Z.L.
AU - Gorodkin, Jan
AU - Reecy, J.M.
AU - Fredholm, Merete
N1 - Corrigendum: In Karlskov‐Mortensen et al. (2007), an acknowledgement to Project No. 513928 from the Sixth Framework Programme of the European Commission was omitted. The complete acknowledgements are given here. https://doi.org/10.1111/j.1365-2052.2008.01839.x
PY - 2007
Y1 - 2007
N2 - A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.
AB - A total of 10 882 porcine microsatelite repeats were identified in genomic shotgun sequences from the Sino-Danish Pig Genome Sequencing Consortium (http://piggenome.dk). Of these, 4528 microsatellites were placed on a pig-human comparative map by BLAST analysis of porcine sequences against the human genome (BLAST cut-off threshold = 1 x 10-5). All microsatellite sequences placed on the comparative map are accessible at http://www.animalgenome.org/QTLdb/pig.html. These sequences increase the number of identified microsatellites in the porcine genome by several orders of magnitude. They are a new resource of microsatellite sequences for generating markers to be used in linkage studies and in fine mapping and positional cloning of quantitative trait loci.
KW - Former LIFE faculty
KW - comparative map
KW - genetic marker
KW - linkage map
KW - microsatellite
KW - pig
KW - positional quantitative trait loci mining
U2 - 10.1111/j.1365-2052.2007.01609.x
DO - 10.1111/j.1365-2052.2007.01609.x
M3 - Journal article
C2 - 17559553
VL - 38
SP - 401
EP - 405
JO - Animal Genetics
JF - Animal Genetics
SN - 0268-9146
IS - 4
ER -
ID: 8078676