Amin Doostmohammadi
Associate Professor - Promotion Programme
Biocomplexity
Blegdamsvej 17
2100 København Ø
- 2024
- Published
Spontaneous self-constraint in active nematic flows
Head, L. C., Doré, C., Keogh, R. R., Bonn, Lasse Frederik, Negro, G., Marenduzzo, D., Doostmohammadi, Amin, Thijssen, Kristian, López-león, T. & Shendruk, T. N., 18 Jan 2024, In: Nature Physics. 20, 3, p. 492-500 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short-range correlation of stress chains near solid-to-liquid transition in active monolayers
Khosh Sokhan Monfared, Siavash, Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 8 May 2024, In: Journal of the Royal Society Interface. 21, 214, 8 p., 20240022.Research output: Contribution to journal › Journal article › Research › peer-review
- Accepted/In press
Filopodia: integrating cellular functions with theoretical models
Thusgaard Ruhoff, Victoria, Leijnse, N., Doostmohammadi, Amin & Bendix, Poul Martin, 2024, (Accepted/In press) In: Trends in Cell Biology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Periodic orbits, pair nucleation, and unbinding of active nematic defects on cones
Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 7 Jun 2024, In: Physical Review E. 109, 6, 15 p., 064606.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter
Andersen, Benjamin Halager, Renaud-Mornant, J., Rønning, J., Angheluta, L. & Doostmohammadi, Amin, 14 Jun 2023, In: Physical Review Fluids. 8, 14 p., 063101.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Collective rotational motion of freely expanding T84 epithelial cell colonies
Ascione, F., Caserta, S., Esposito, S., Rachela, V. V., Maiuri, L., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Guido, S., 22 Feb 2023, In: Journal of the Royal Society Interface. 20, 199, 12 p., 20220719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elasticity tunes mechanical stress localization around active topological defects
Bonn, Lasse Frederik, Ardaeva, Aleksandra & Doostmohammadi, Amin, 28 Nov 2023, In: Soft Matter. 20, 1, p. 115-123 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial: Active and Intelligent Living Matter: from Fundamentals to Applications
Doostmohammadi, Amin, Mazza, M. G., Shendruk, T. N. & Stark, H., 12 Jun 2023, In: Frontiers in Physics. 11, 2 p., 1231716.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Mechanical basis and topological routes to cell elimination
Monfared, S., Ravichandran, G., Andrade, J. & Doostmohammadi, Amin, 18 Apr 2023, In: eLife. 12, 20 p., 82435.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spontaneous flows and dynamics of full-integer topological defects in polar active matter
Rønning, J., Renaud, J., Doostmohammadi, Amin & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active topological defect absorption by a curvature singularity
Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Unifying polar and nematic active matter: Emergence and co-existence of half-integer and full-integer topological defects
Amiri, A., Mueller, R. & Doostmohammadi, Amin, 4 Mar 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 9, 12 p., 094002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bridging microscopic cell dynamics to nematohydrodynamics of cell monolayers
Ardaeva, Aleksandra, Mueller, R. & Doostmohammadi, Amin, 29 Jun 2022, In: Soft Matter. 18, 25, p. 4737-4746 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Topological defects in biological matter
Ardaeva, Aleksandra & Doostmohammadi, Amin, 2022, In: Nature Reviews Physics. 4, p. 354-356 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluctuation-induced dynamics of nematic topological defects
Bonn, Lasse Frederik, Ardaeva, Aleksandra, Mueller, R., Shendruk, T. N. & Doostmohammadi, Amin, 2022, In: Physical Review E. 106, 10 p., 044706.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physics of liquid crystals in cell biology
Doostmohammadi, Amin & Ladoux, B., Feb 2022, In: Trends in Cell Biology. 32, 2, p. 140-150 11 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Filopodia rotate and coil by actively generating twist in their actin shaft
Leijnse, N., Farhangibarooji, Younes, Arastoo, M. R., Sonder, S. L., Verhagen, B., Wullkopf, L., Erler, Janine, Semsey, S., Nylandsted, J., Oddershede, L. B., Doostmohammadi, Amin & Bendix, Poul Martin, 28 Mar 2022, In: Nature Communications. 13, 1, 16 p., 1636.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images
Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, Amin & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-sustained oscillations of active viscoelastic matter
Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nematic order condensation and topological defects in inertial active nematics
Saghatchi, R., Yildiz, M. & Doostmohammadi, Amin, 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quadrupolar active stress induces exotic patterns of defect motion in compressible active nematics
Sultan, S. A., Nejad, M. R. & Doostmohammadi, Amin, 7 May 2022, In: Soft Matter. 18, p. 4118-4126 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct impacts of polar and nematic self-propulsion on active unjamming
Venkatesh, V., Mondal, C. & Doostmohammadi, Amin, 2022, In: Journal of Chemical Physics. 157, 16, 11 p., 164901.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiciliated cells use filopodia to probe tissue mechanics during epithelial integration in vivo
Ventura, G., Amiri, A., Thiagarajan, Raghavan, Tolonen, Mari, Doostmohammadi, Amin & Sedzinski, Jakub, 2022, In: Nature Communications. 13, 1, 15 p., 6423.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Investigating the nature of active forces in tissues reveals how contractile cells can form extensile monolayers
Balasubramaniam, L., Doostmohammadi, Amin, Saw, T. B., Narayana, G. H. N. S., Mueller, R., Dang, T., Thomas, M., Gupta, S., Sonam, S., Yap, A. S., Toyama, Y., Mege, R., Yeomans, J. M. & Ladoux, B., 18 Feb 2021, In: Nature Materials. 20, 8, p. 1156-1166 33 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mechanics of Live Cell Elimination
Monfared, S., Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 18 Aug 2021, In: bioRxiv. p. 1-7 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Memory effects, arches and polar defect ordering at the cross-over from wet to dry active nematics
Nejad, M. R., Doostmohammadi, Amin & Yeomans, J. M., 7 Mar 2021, In: Soft Matter. 17, 9, p. 2500-2511 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal model of cellular mechanotransduction via Rho and YAP
Novev, Yavor Kirilov, Heltberg, Mathias Spliid, Jensen, Mogens Høgh & Doostmohammadi, Amin, 17 Aug 2021, In: Integrative Biology. 13, 8, p. 197-209 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity pulses induce spontaneous flow reversals in viscoelastic environments
Plan, E. L. C. V. I. M., Yeomans, J. M. & Doostmohammadi, Amin, 14 Apr 2021, In: Interface Focus. 18, 177, 7 p., 20210100.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity-induced instabilities of brain organoids
Thijssen, K., Kusters, G. L. A. & Doostmohammadi, Amin, 7 Dec 2021, In: The European Physical Journal E: Soft Matter and Biological Physics. 44, 12, 8 p., 147.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- 2020
- Published
Flow States and Transitions of an Active Nematic in a Three-Dimensional Channel
Chandragiri, S., Doostmohammadi, Amin, Yeomans, J. M. & Thampi, S. P., 30 Sep 2020, In: Physical Review Letters. 125, 14, 6 p., 148002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The 2020 motile active matter roadmap
Gompper, G., Winkler, R. G., Speck, T., Solon, A., Nardini, C., Peruani, F., Loewen, H., Golestanian, R., Kaupp, U. B., Alvarez, L., Kiorboe, T., Lauga, E., Poon, W. C. K., DeSimone, A., Muinos-Landin, S., Fischer, A., Soeker, N. A., Cichos, F., Kapral, R., Gaspard, P. & 17 others, , 8 May 2020, In: Journal of Physics: Condensed Matter. 32, 19, 68 p., 193001.Research output: Contribution to journal › Review › Research › peer-review
- Published
Bacteria solve the problem of crowding by moving slowly
Meacock, O. J., Doostmohammadi, Amin, Foster, K. R., Yeomans, J. M. & Durham, W. M., 23 Nov 2020, In: Nature Physics. 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mesoscale modelling of polymer aggregate digestion
Novev, Yavor Kirilov, Doostmohammadi, Amin, Zöttl, A. & Yeomans, J. M., 1 Nov 2020, In: Current Research in Food Science. 3, p. 122-133 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active matter in a viscoelastic environment
Plan, E. L. C. V. M., Yeomans, J. M. & Doostmohammadi, Amin, 24 Feb 2020, In: Physical Review Fluids. 5, 2, 15 p., 023102.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity Induced Nematic Order in Isotropic Liquid Crystals
Santhosh, S., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Thampi, S. P., 12 Feb 2020, In: Journal of Statistical Physics. 180, 1-6, p. 699-709 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active nematics with anisotropic friction: the decisive role of the flow aligning parameter
Thijssen, K., Metselaar, L., Yeomans, J. M. & Doostmohammadi, Amin, 28 Feb 2020, In: Soft Matter. 16, 8, p. 2065-2074 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Binding self-propelled topological defects in active turbulence
Thijssen, K. & Doostmohammadi, Amin, 13 Oct 2020, In: Physical Review Research. 2, 4, 6 p., 042008.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Polar jets of swimming bacteria condensed by a patterned liquid crystal
Turiv, T., Koizumi, R., Thijssen, K., Genkin, M. M., Yu, H., Peng, C., Wei, Q., Yeomans, J. M., Aranson, I. S., Doostmohammadi, Amin & Lavrentovich, O. D., 2 Mar 2020, In: Nature Physics. 16, 4, p. 481-487 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active inter-cellular forces in collective cell motility
Zhang, G., Mueller, R., Doostmohammadi, Amin & Yeomans, J. M., 26 Aug 2020, In: Journal of the Royal Society. Interface. 17, 169, 9 p., 20200312.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
Active transport in a channel: stabilisation by flow or thermodynamics
Chandragiri, S., Doostmohammadi, Amin, Yeomans, J. M. & Thampi, S. P., 21 Feb 2019, In: Soft Matter. 15, 7, p. 1597-1604Research output: Contribution to journal › Journal article › Research › peer-review
Coherent motion of dense active matter
Doostmohammadi, Amin & Yeomans, J. M., 2 Mar 2019, In: European Physical Journal. Special Topics. 227, 17, p. 2401-2411Research output: Contribution to journal › Journal article › Research › peer-review
Reconfigurable Flows and Defect Landscape of Confined Active Nematics
Hardoüin, J., Hughes, R., Doostmohammadi, Amin, Laurent, J., Lopez-leon, T., Yeo-mans, J. M., Ignés-Mullol, J. & Sagués, F., 5 Mar 2019, (Accepted/In press) In: Communications Physics.Research output: Contribution to journal › Journal article › Research › peer-review
Active matter invasion
Kempf, F., Mueller, R., Frey, E., Yeomans, J. M. & Doostmohammadi, Amin, 29 Aug 2019, In: Soft Matter. p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Topological states in chiral active matter: Dynamic blue phases and active half-skyrmions
Metselaar, L., Doostmohammadi, Amin & Yeomans, J. M., 14 Feb 2019, In: Journal of Chemical Physics. 150, 6, 064909.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Topology and Morphology of Self-Deforming Active Shells
Metselaar, L., Yeomans, J. M. & Doostmohammadi, Amin, 13 Nov 2019, In: Physical Review Letters. 123, 20, 208001.Research output: Contribution to journal › Journal article › Research › peer-review
Emergence of Active Nematic Behavior in Monolayers of Isotropic Cells
Mueller, R., Yeomans, J. M. & Doostmohammadi, Amin, 1 Feb 2019, In: Physical Review Letters. 122, 4, 5 p., 048004.Research output: Contribution to journal › Journal article › Research › peer-review
Sustained Oscillations of Epithelial Cell Sheets
Peyret, G., Mueller, R., d'Alessandro, J., Begnaud, S., Marcq, P., Mege, R., Yeomans, J. M., Doostmohammadi, Amin & Ladoux, B., 6 Aug 2019, In: Biophysical Journal. 117, 3, p. 464-478Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
Active nematics
Doostmohammadi, Amin, Ignes-Mullol, J., Yeomans, J. M. & Sagues, F., 21 Aug 2018, In: Nature Communications. 9, 13 p., 3246.Research output: Contribution to journal › Review › Research › peer-review
Two-dimensional, blue phase tactoids
Metselaar, L., Doostmohammadi, Amin & Yeomans, J. M., 1 Jun 2018, In: Molecular Physics. 116, 21-22, p. 2856-2863Research output: Contribution to journal › Journal article › Research › peer-review
Twist-induced crossover from two-dimensional to three-dimensional turbulence in active nematics
Shendruk, T. N., Thijssen, K., Yeomans, J. M. & Doostmohammadi, Amin, 13 Jul 2018, In: Physical Review E. 98, 1, 7 p., 010601(R).Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
Transport of particles, drops, and small organisms in density stratified fluids
Ardekani, A. M., Doostmohammadi, Amin & Desai, N., 17 Oct 2017, In: Physical Review Fluids. 2, 10, 23 p., 100503.Research output: Contribution to journal › Journal article › Research › peer-review
Onset of meso-scale turbulence in active nematics
Doostmohammadi, Amin, Shendruk, T. N., Thijssen, K. & Yeomans, J. M., 16 May 2017, In: Nature Communications. 8, 7 p., 15326.Research output: Contribution to journal › Journal article › Research › peer-review
Electric-field-induced shape transition of nematic tactoids
Metselaar, L., Dozov, I., Antonova, K., Belamie, E., Davidson, P., Yeomans, J. M. & Doostmohammadi, Amin, 9 Aug 2017, In: Physical Review E. 96, 2, 7 p., 022706.Research output: Contribution to journal › Journal article › Research › peer-review
Topological defects in epithelia govern cell death and extrusion
Saw, T. B., Doostmohammadi, Amin, Nier, V., Kocgozlu, L., Thampi, S., Toyama, Y., Marcq, P., Lim, C. T., Yeomans, J. M. & Ladoux, B., 13 Apr 2017, In: Nature. 544, 7649, p. 212-216Research output: Contribution to journal › Journal article › Research › peer-review
Dancing disclinations in confined active nematics
Shendruk, T. N., Doostmohammadi, Amin, Thijssen, K. & Yeomans, J. M., 7 Jun 2017, In: Soft Matter. 13, 21, p. 3853-3862Research output: Contribution to journal › Journal article › Research › peer-review
Multi-scale statistics of turbulence motorized by active matter
Urzay, J., Doostmohammadi, Amin & Yeomans, J. M., 10 Jul 2017, In: Journal of Fluid Mechanics. 822, p. 762-773Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
Defect-Mediated Morphologies in Growing Cell Colonies
Doostmohammadi, Amin, Thampi, S. P. & Yeomans, J. M., 20 Jul 2016, In: Physical Review Letters. 117, 4, 5 p., 048102.Research output: Contribution to journal › Journal article › Research › peer-review
Stabilization of active matter by flow-vortex lattices and defect ordering
Doostmohammadi, Amin, Adamer, M. F., Thampi, S. P. & Yeomans, J. M., Feb 2016, In: Nature Communications. 7, 9 p., 10557.Research output: Contribution to journal › Journal article › Research › peer-review
Hydrodynamics of micro-swimmers in films
Mathijssen, A. J. T. M., Doostmohammadi, Amin, Yeomans, J. M. & Shendruk, T. N., Nov 2016, In: Journal of Fluid Mechanics. 806, p. 35-70Research output: Contribution to journal › Journal article › Research › peer-review
Hotspots of boundary accumulation: dynamics and statistics of micro-swimmers in flowing films
Mathijssen, A. J. T. M., Doostmohammadi, Amin, Yeomans, J. M. & Shendruk, T. N., 1 Feb 2016, In: Interface Focus. 13, 115, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Upstream Swimming in Microbiological Flows
Mathijssen, A. J. T. M., Shendruk, T. N., Yeomans, J. M. & Doostmohammadi, Amin, 15 Jan 2016, In: Physical Review Letters. 116, 2, 028104.Research output: Contribution to journal › Journal article › Research › peer-review
Active micromachines: Microfluidics powered by mesoscale turbulence
Thampi, S. P., Doostmohammadi, Amin, Shendruk, T. N., Golestanian, R. & Yeomans, J. M., 8 Jul 2016, In: Science Advances. 2, 7, e1501854.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
Rising motion of a swarm of drops in a linearly stratified fluid
Dabiri, S., Doostmohammadi, Amin, Bayareh, M. & Ardekani, A. M., 25 Oct 2015, In: International Journal of Multiphase Flow. 69, p. 8-17Research output: Contribution to journal › Journal article › Research › peer-review
Suspension of solid particles in a density stratified fluid
Doostmohammadi, Amin & Ardekani, A. M., 17 Feb 2015, In: Physics of Fluids. 27, 2, 023302.Research output: Contribution to journal › Journal article › Research › peer-review
Celebrating Soft Matter's 10th Anniversary: Cell division: a source of active stress in cellular monolayers
Doostmohammadi, Amin, Thampi, S. P., Saw, T. B., Lim, C. T., Ladoux, B. & Yeomans, J. M., 6 Aug 2015, In: Soft Matter. 11, 37, p. 7328-7336Research output: Contribution to journal › Journal article › Research › peer-review
Intrinsic free energy in active nematics
Thampi, S. P., Doostmohammadi, Amin, Golestanian, R. & Yeomans, J. M., 1 Oct 2015, In: EPL. 112, 2, 7 p., 28004.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
A numerical study of the dynamics of a particle settling at moderate Reynolds numbers in a linearly stratified fluid
Doostmohammadi, Amin, Dabiri, S. & Ardekani, A. M., 24 May 2014, In: Journal of Fluid Mechanics. 750, p. 5-32Research output: Contribution to journal › Journal article › Research › peer-review
Reorientation of elongated particles at density interfaces
Doostmohammadi, Amin & Ardekani, A. M., 22 Sep 2014, In: Physical Review E. 90, 3, 033013.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
On the rising motion of a drop in stratified fluids
Bayareh, M., Doostmohammadi, Amin, Dabiri, S. & Ardekani, A. M., 13 Oct 2013, In: Physics of Fluids. 25, 10Research output: Contribution to journal › Journal article › Research › peer-review
Interaction between a pair of particles settling in a stratified fluid
Doostmohammadi, Amin & Ardekani, A. M., 30 Aug 2013, In: Physical Review E. 88, 2, 10 p., 023029.Research output: Contribution to journal › Journal article › Research › peer-review
Vertical Migration of the Small Organisms in a Stratified Fluid
Doostmohammadi, Amin & Ardekani, A. M., 24 Jul 2013, In: ASME Fluids Engineering Division Summer Meeting. p. 823-829Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
Low-Reynolds-number swimming at pycnoclines
Doostmohammadi, Amin, Stocker, R. & Ardekani, A. M., 6 Mar 2012, In: Proceedings of the National Academy of Sciences USA (PNAS). 109, 10, p. 3856-3861Research output: Contribution to journal › Journal article › Research › peer-review
ID: 226571010
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176
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The 2020 motile active matter roadmap
Research output: Contribution to journal › Review › Research › peer-review
Published -
105
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Physics of liquid crystals in cell biology
Research output: Contribution to journal › Review › Research › peer-review
Published -
84
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Coherent motion of dense active matter
Research output: Contribution to journal › Journal article › Research › peer-review