Kim Sneppen
Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- Published
Theory for the stability and regulation of epigenetic landscapes
Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Robustness of the Right Operator in Bacteriophage µ
Metzler, R., Bakk, A. & Sneppen, Kim, 2004, In: Biophysical Journal. 86, p. 58-66Research output: Contribution to journal › Journal article › Research › peer-review
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Organizational structure and communication networks in a university environment
Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity
Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Upstream plasticity and downstream robustness in evolution of molecular networks
Maslov, S., Sneppen, Kim, Astrup Eriksen, K. & Yan, K., 2004, In: BMC Evolutionary Biology. 4, p. 9-Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational architecture of the yeast regulatory network: Workshop on Flexibility in Biomolecules, MAY 15-18, 2005 Tempe, AZ
Maslov, S. & Sneppen, Kim, 2005, In: Physical Biology. 2, 4, Sp. iss. Sl, p. S94-S100Research output: Contribution to journal › Journal article › Research › peer-review
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Diversity Waves in Collapse-Driven Population Dynamics
Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.Research output: Contribution to journal › Journal article › Research › peer-review
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Well-temperate phage: optimal bet-hedging against local environmental collapses
Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.Research output: Contribution to journal › Conference article › Research › peer-review
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Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Severe population collapses and species extinctions in multihost epidemic dynamics
Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spreading out of perturbations in reversible reaction networks
Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control
Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From kill the winner to eliminate the winner in open phage-bacteria systems
Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the Link between Nucleosome Occupancy and DNA Methylation
Lövkvist, Cecilia, Sneppen, Kim & Härter, Jan Olaf Mirko, 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.Research output: Contribution to journal › Journal article › Research › peer-review
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DNA methylation in human epigenomes depends on local topology of CpG sites
Lövkvist, Cecilia, Dodd, I. B., Sneppen, Kim & Härter, Jan Olaf Mirko, 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5123-5132Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds
Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Time walkers and spatial dynamics of ageing information
Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic Regulatory Networks that count to 3
Lehmann, M. & Sneppen, Kim, 1 Jul 2013, In: Journal of Theoretical Biology. 329, p. 15-19 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Spiky oscillations in NF-KB signalling
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845Research output: Contribution to journal › Journal article › Research › peer-review
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 26 Dec 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 52, p. 20815-9 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli
Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678Research output: Contribution to journal › Journal article › Research › peer-review
Structure and function of negative feedback loops at the interface of genetic and metabolic networks
Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-62 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Signalling and Feedback in Biological Networks
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
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Structure and function of negative feedback loops at the interface of genetic and metabolic networks
Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819Research output: Contribution to journal › Conference article › Research › peer-review
- Published
UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model
Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Minimal model of spiky oscillations in NF-kB signaling
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 4, p. 10840-10845Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.Research output: Contribution to journal › Journal article › Research
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Superspreading quantified from bursty epidemic trajectories
Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.Research output: Contribution to journal › Journal article › Research › peer-review
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Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19
Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emerging diversity in a population of evolving intransitive dice
Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Superspreading of airborne pathogens in a heterogeneous world
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Optimal Transport Flows for Distributed Production Networks
Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.Research output: Contribution to journal › Journal article › Research › peer-review
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Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning
Kirkeby, Carsten, Græsbøll, K., Halasa, T., Sneppen, Kim & Christiansen, L. E., 2020, In: Ingenøren.dk.Research output: Contribution to journal › Journal article › Communication
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Self organized scale-free networks from merging and regeneration
Kim, B. J., Trusina, A., Minnhagen, P. & Sneppen, Kim, 2005, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 3, p. 369-372Research output: Contribution to journal › Journal article › Research › peer-review
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Locally self-organized quasicritical percolation in a multiple-disease model
Juul, J. S. & Sneppen, Kim, 30 Sep 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 3, p. 0036119 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Labyrinthine clustering in a spatial rock-paper-scissors ecosystem
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 8 Apr 2013, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 87, 4, p. 042702 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dynamical genetic regulation
Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).Research output: Book/Report › Book › Research › peer-review
- Published
Komolgorov scaling from random force fields
Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sustained oscillations and time delay in gene expression of protein hesl
Jensen, Mogens Høgh & Sneppen, Kim, 2003, In: FEBS Letters. 541, p. 176-177Research output: Contribution to journal › Journal article › Research › peer-review
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Oscillating gene expressions in regulatory network: Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology
Jensen, Mogens Høgh, Sneppen, Kim & Tiana, G., 2005, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. 160, p. 195-202Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model
Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Targeted bacterial immunity buffres phage diversity
Härter, Jan Olaf Mirko, Trusina, Ala & Sneppen, Kim, 21 Aug 2011, In: Journal of Virology. 85, 20, p. 10554-10560 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phage and bacteria support mutual diversity in a narrowing staircase of coexistence
Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states
Härter, Jan Olaf Mirko, Lövkvist, Cecilia, Dodd, I. B. & Sneppen, Kim, 1 Feb 2014, In: Nucleic Acids Research. 42, 4, p. 2235-2244Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus
Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Food Web Assembly Rules for Generalized Lotka-Volterra Equations
Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 10093
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
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