Julius Bier Kirkegaard
Assistant Professor, Tenure Track Assistant Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
- 2023
- Published
Epigenetic switching with asymmetric bridging interactions
Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast detection of slender bodies in high density microscopy data
Alonso, Albert & Kirkegaard, Julius Bier, 2023, In: Communications Biology . 6, 1, 12 p., 754.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protocol to assess metabolic activity of Pseudomonas aeruginosa by measuring heat flow using isothermal calorimetry
Beilharz, K., Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim, Bjarnsholt, Thomas & Lichtenberg, Mads, 2023, In: STAR Protocols. 4, 2, 102269.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Emerging diversity in a population of evolving intransitive dice
Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Curvature strains as a global orchestrator of morphogenesis
Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations
Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa
Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptomic Fingerprint of Bacterial Infection in Lower Extremity Ulcers
Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Nielsen, C. H., Kirketerp-Møller, K., Malone, M. & Bjarnsholt, Thomas, 2022, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 130, 8, p. 524-534Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Superspreading quantified from bursty epidemic trajectories
Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Superspreading of airborne pathogens in a heterogeneous world
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19
Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.Research output: Contribution to journal › Journal article › Research
- Published
Optimal Transport Flows for Distributed Production Networks
Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.Research output: Contribution to journal › Journal article › Research › peer-review
Fluctuations in the Kinetics of Linear Protein Self-Assembly.
Michaels, T., Dear, A., Kirkegaard, Julius Bier, Saar, K. L., Weitz, D. A. & Knowles, T., 23 Aug 2019, In: Apollo - University of Cambridge Repository. 116, 25, p. 258103-258103 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
Multistep Inhibition of α-Synuclein Aggregation and Toxicity in Vitro and in Vivo by Trodusquemine.
perni, M., Flagmeier, P., Limbocker, R., Cascella, R., Aprile, F. A., Galvagnion, C., Heller, G. T., Meisl, G., Chen, S. W., Kumita, J., challa, P. K., Kirkegaard, J., Cohen, S. IA., Mannini, B., Barbut, D., Nollen, E. AA., Cecchi, C., Casasin, N. C., Knowles, T., Chiti, F. & 3 others, , 18 Jul 2019, In: Apollo - University of Cambridge Repository.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
The noisy basis of morphogenesis: Mechanisms and mechanics of cell sheet folding inferred from developmental variability.
Haas, P., Höhn, S. S., Honerkamp-Smith, A. R., Kirkegaard, Julius Bier & Goldstein, R., 8 Sep 2018, In: P L o S Biology. e2005536.Research output: Contribution to journal › Journal article › Research › peer-review
Massively parallel C. elegans tracking provides multi-dimensional fingerprints for phenotypic discovery.
perni, M., challa, P. K., Kirkegaard, Julius Bier, Limbocker, R., Koopman, M., Hardenberg, M. C., Sormanni, P., Müller, T., Saar, K. L., Roode, L. W., Habchi, J., Vecchi, G., Fernando, N., Casford, S., Nollen, E. A., Vendruscolo, M., Dobson, C. & Knowles, T., 27 Jul 2018, In: Apollo - University of Cambridge Repository. 32 p.Research output: Contribution to journal › Journal article › Research › peer-review
The role of tumbling frequency and persistence in optimal run-and-tumble chemotaxis
Kirkegaard, Julius Bier & Goldstein, R. E., Jul 2018, In: IMA Journal of Applied Mathematics. 83, 4, p. 700-719 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
Intra-chain organisation of hydrophobic residues controls inter-chain aggregation rates of amphiphilic polymers.
Varilly, P., Willard, A., Kirkegaard, Julius Bier, Knowles, T. & Chandler, D., Apr 2017, In: The Journal of Chemical Physics. 146, 5 p., 135102.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity
Perni, M., Galvagnion, C., Maltsev, A., Meisl, G., Müller, M. B. D., Challa, P. K., Kirkegaard, J. B., Flagmeier, P., Cohen, S. I. A., Cascella, R., Chen, S. W., Limbocker, R., Sormanni, P., Heller, G. T., Aprile, F. A., Cremades, N., Cecchi, C., Chiti, F., Nollen, E. A. A., Knowles, T. P. J. & 4 others, , 7 Feb 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 6, p. E1009-E1017Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
Aerotaxis in the closest relatives of animals.
Kirkegaard, Julius Bier, Bouillant, A., Marron, A., Leptos, K. & Goldstein, R., Nov 2016, In: eLife. 5, 16 p., e18109.Research output: Contribution to journal › Journal article › Research › peer-review
Filter-feeding, near-field flows, and the morphologies of colonial choanoflagellates.
Kirkegaard, Julius Bier & Goldstein, R., Nov 2016, In: Physical Review E. 94, 7 p., 052401.Research output: Contribution to journal › Journal article › Research › peer-review
Fluctuations in the Kinetics of Linear Protein Self-Assembly.
Michaels, T., Dear, A., Kirkegaard, Julius Bier, Saar, K., Weitz, D. & Knowles, T., Jun 2016, In: Physical Review Letters. 116, 5 p., 258103.Research output: Contribution to journal › Journal article › Research › peer-review
Molecular mechanisms of protein aggregation from global fitting of kinetic models.
Meisl, G., Kirkegaard, Julius Bier, Arosio, P., Michaels, T., Vendruscolo, M., Dobson, C., Linse, S. & Knowles, T., Jan 2016, In: Nature Protocols. 11, p. 252-272 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
Motility of Colonial Choanoflagellates and the Statistics of Aggregate Random Walkers.
Kirkegaard, Julius Bier, Marron, A. & Goldstein, R., Jan 2016, In: Physical Review Letters. 116, 6 p., 038102.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
Easyworm: an open-source software tool to determine the mechanical properties of worm-like chains.
Lamour, G., Kirkegaard, Julius Bier, Li, H., Knowles, T. & Gsponer, J., Jul 2014, In: Source Code for Biology and Medicine. 9, 6 p., 16.Research output: Contribution to journal › Journal article › Research › peer-review
Differences in nucleation behavior underlie the contrasting aggregation kinetics of the Aβ40 and Aβ42 peptides.
Meisl, G., Yang, X., Hellstrand, E., Frohm, B., Kirkegaard, Julius Bier, Cohen, S., Dobson, C., Linse, S. & Knowles, T., Jun 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, p. 9384-9389 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
Modelling electrolyte conductivity in a water electrolyzer cell
Caspersen, M. & Kirkegaard, Julius Bier, 2012, In: International Journal of Hydrogen Energy. 37, 9, p. 7436-7441 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 37768596
Most downloads
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169
downloads
Optimal Transport Flows for Distributed Production Networks
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
137
downloads
Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
64
downloads
Superspreading of airborne pathogens in a heterogeneous world
Research output: Contribution to journal › Journal article › Research › peer-review
Published