Biocomplexity

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  1. 2009
  2. Published

    Simple model for wet granular materials with liquid cluster

    Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Quantification of droplet deformation by electromagnetic trapping

    Møller, P. C. F. & Oddershede, L. B., 2009, In: EPL. 88, p. 48005 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Optical tweezers techniques, chapter in Hanndbook of Molecular Biophysics: Methods and Applications

    Oddershede, L. B., 2009, Handbook of Molecular Biophysics. G. Bohr, H. (ed.). Wiley-VCH, p. 195-214 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  5. Published

    Speciation-rate dependence in species-area relationships

    Pigolotti, S. & Cencini, M., 7 Sep 2009, In: Journal of Theoretical Biology. 260, 1, p. 83-89 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Symbolic dynamics of biological feedback networks

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2009, In: Physical Review Letters. 102, 8, p. 088701

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Confocal microscopy of thick specimens

    Reihani, S. N. S. & Oddershede, L. B., 2009, In: Journal of Biomedical Optics. 14, 3, p. 030513-030513-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Reinforced communication and social navigation generate groups in model networks

    Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Ising model for neural data: Model quality and approximate methods for extracting functional connectivity

    Roudi, Y., Tyrcha, J. & Hertz, John, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 5, p. 051915 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Statistical physics of pairwise probability models

    Roudi, Y., Aurell, E. & Hertz, John, 2009, In: Frontiers in Computational Neuroscience. 3, 22, p. (art 22) 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Effect of antibiotics and antimicrobial peptides on single protein motility

    Ryder, T. W. & Oddershede, L. B., 2009, In: Current Pharmaceutical Biotechnology. 10, 5, p. 486-493 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Effect of energy metabolism and membrane structure on single ¿-receptor motility

    Ryder, T. W., 2009, København: Museum Tusculanum. 101 p.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Effect of energy metabolism on protein motility in the bacterial outer membrane

    Ryder, T. W., Xu, L., Berg-Sørensen, K., Brown, Stanley & Oddershede, L. B., 2009, In: Biophysical Journal. 97, 5, p. 1305-1312 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, Pernille, Berg-Sorensen, K. & Oddershede, L. B., Jun 2009, In: Physical Biology. 6, 2, 9 p., 025015.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Tracking cell-nanoparticle interactions

    Selhuber-Unkel, C. J. M., 1 Dec 2009, In: Journal of Biomedical Nanotechnology. 5, 6, Sp.Iss. Sl., p. 634-640 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Dominant negative autoregulation limits steady-state repression levels in gene networks

    Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Dynamics of the recovery from sRNA-mediated gene silencing

    Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Nonideal behavior of intramolecular structure factor of dilute polymers in a theta solvent

    Shimomura, K., Nakanishi, H. & Mitarai, Namiko, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 051804

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Texture of the upper 1000 m in the GRIP and NorthGRIP ice cores

    Svensson, Anders, Durand, G., Mathiesen, Joachim, Persson, A. & Dahl-Jensen, Dorthe, 2009, Low Temperature Science Supplement Issue: Physics of Ice Core Records II. Hondoh, T. (ed.). Institute of Low Temperature Science, Hokkaido University, Sapporo Japan, Vol. 68. p. 107-113 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  22. Published

    Measurement of the spin-forbidden decay rate (3s3d)1D2¿(3s3p)3 P2,1 in 24Mg

    Therkildsen, K. T., Jensen, B. B., Ryder, C. P., Malossi, N. & Thomsen, Jan Westenkær, 2009, In: Physical Review A (Atomic, Molecular and Optical Physics). 79, 3, p. 034501 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations

    Wodzinska, K., Blicher, A. & Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Phase-state dependent current fluctuation in pure lipid membranes

    Wunderlich, B., Leirer, C. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4592-4597 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2010
  27. Published

    Functionality and noise in gene regulation qualitative answers from quantitative models & stochastic aspects of gene regulation

    Andersson, A. M. C., 1 Apr 2010, Niels Bohr Institute ed. University of Copenhagen: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research

  28. Published

    Thermodynamics of stressed solids: Slow deformation and roughening of material interfaces

    Angheluta, L. & Mathiesen, Joachim, 1 Jan 2010, In: European Physical Journal. Special Topics. 178, 1, p. 123-132 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Morphological instabilities of stressed and reactive geological interfaces

    Angheluta, L., Mathiesen, Joachim, Misbah, C. & Renard, F., 24 Jun 2010, In: Journal of Geophysical Research: Biogeosciences. 115, p. B06406 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

    Avlund, M., Krishna, S., Semsey, S., Dodd, I. B. & Sneppen, Kim, 20 Dec 2010, In: PLoS ONE. 5, 12, p. 0015037 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Observation of periodic orbits on curved two-dimensional geometries

    Avlund, M., Ellegaard, Clive Sigurd, Oxborrow, M. & Søndergaard, N., 23 Apr 2010, In: Physical Review Letters. 104, 16, p. 164101 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    An investigation on methods for free-field comparison calibration of measurement microphones

    Barrera Figueroa, S., Moreno Pescador, Guillermo Sergio, Jacobsen, F., Rasmussen, K., Cutanda Henriquez, V. & Juhl, P. M., 2010, Proceedings of Internoise 2010: 39th International Congress and Exposition on Noise Control Engineering - Lisbon, Portugal Duration:,15 Jun 2010 → 16 Jun 2010. Portugal, Lisbon, Vol. 39. p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  33. Published

    Direct measurements of heating by electromagnetically trapped gold nanoparticles on supported lipid bilayers

    Bendix, Poul Martin, Seyyed Reihani, S. N. & Oddershede, L. B., 6 Apr 2010, In: ACS Nano. 4, 4, p. 2256-2262 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    On two-dimensionalization of three-dimensional turbulence in shell models

    Chakraborty, S., Jensen, Mogens Høgh & Sarkar, A., 15 Jan 2010, In: European Physical Journal B. Condensed Matter and Complex Systems. 73, 3, p. 447-453 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Three-dimensional turbulent relative dispersion by the Gledzer-Ohkitani-Yamada shell model

    Chakraborty, S., Jensen, Mogens Høgh & Madsen, B. S., 13 Jan 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 1, p. 017301 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Stop-and-go kinetics in amyloid fibrillation

    Ferkinghoff-Borg, J., Fonslet, J., Andersen, C. B., Krishna, S., Pigolotti, S., Hisashi, Y., Yuji, G., Otzen, D. & Jensen, Mogens Høgh, 1 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 010901(R) 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Active-passive calibration of optical tweezers in viscoelastic media.

    Fischer, M., Richardson, A. C., Seyyed Reihani, S. N., Oddershede, L. B. & Berg-Sørensen, K., 14 Jan 2010, In: Review of Scientific Instruments. 81, 1, p. 015103 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Ion-channel-like behavior in lipid bilayer membranes at the melting transition

    Gallaher, J., Wodzinska, K., Heimburg, Thomas Rainer & Bier, M., 30 Jun 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 6, Part 1, p. 061925 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Diffusion-limited tumour growth: simulations and analysis

    Gerlee, P. D. M. & Anderson, A. R. A., 1 Apr 2010, In: Mathematical Biosciences and Engineering. 7, 2, p. 385-400 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    PRODUCTIVITY AND DIVERSITY IN A CROSS-FEEDING POPULATION OF ARTIFICIAL ORGANISMS

    Gerlee, P. D. M. & Lundh, T., 20 Apr 2010, In: Evolution. 64, 9, p. 2716-2730 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Structural correlations in bacterial metabolic networks

    Gerlee, P. D. M., Bernhardsson, P. J. S., Lizana, G. L. & Sneppen, Kim, 1 Jun 2010, In: FEBS Journal. 277, Suppl. 1, p. 114-114 1 p.

    Research output: Contribution to journal › Journal article › Research

  42. Published

    Influence of Lipid Heterogeneity and Phase Behavior on Phospholipase A(2) Action at the Single Molecule Level

    Gudmand, M. J., Rocha, S., Hatzakis, Nikos, Peneva, K., Müllen , K., Stamou, Dimitrios, Uji-I, H., Hofkens , J., Bjørnholm, T. & Heimburg, Thomas Rainer, 5 May 2010, In: Biophysical Journal. 98, 9, p. 1873-82 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Finding diabetic nephropathy biomarkers in the plasma peptidome by high-throughput magnetic bead processing and MALDI-TOF-MS analysis

    Hansen, H. G., Overgaard, J., Lajer, M., Hubalek, F., Højrup, P., Pedersen, L., Tarnow, L., Rossing, Peter, Pociot, Flemming & McGuire, J. N., 1 Sep 2010, In: Proteomics - Clinical Applications. 4, 8-9, p. 697-705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Sustainability of Virulence in a Phage-Bacterial Ecosystem

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 1 Mar 2010, In: Journal of Virology. 84, 6, p. 3016-3022 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Contribution about sound pulses in nerves and anesthesia

    Heimburg, Thomas Rainer, 1 May 2010, København

    Research output: Other contribution › Research

  46. Published

    Electromechanical theory of nerve pulses and channel formation

    Heimburg, Thomas Rainer, 5 Feb 2010, Dept. of Chemical Engineering, Spain

    Research output: Other contribution › Research

  47. Published

    Lipid ion channels

    Heimburg, Thomas Rainer, 1 Aug 2010, In: Biophysical Chemistry. 150, 1-3, p. 2-22 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Physics of nerves: the action potential as a propagating density pulse

    Heimburg, Thomas Rainer, 2010, Lyngby, Danmark

    Research output: Other contribution › Research

  49. Published

    The physics of nerves and lipid ion channels

    Heimburg, Thomas Rainer, 2010, Cavendish Laboratory, UK

    Research output: Other contribution › Research

  50. Published

    Cross-correlations in high-conductance states of a model cortical network

    Hertz, John, 1 Feb 2010, In: Neural Computation. 22, 2, p. 427-447 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Timing of gene transcription in the galactose utilization system of Escherichia coli

    Horvath, P., Hunziker, A., Erdossy, J., Krishna, S. & Semsey, S., 3 Dec 2010, In: Journal of Biological Chemistry. 285, 49, p. 38062-38068 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Genetic flexibility of regulatory networks

    Hunziker, A., Tuboly, C., Horváth, P., Krishna, S. & Semsey, S., 20 Jul 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 29, p. 12998-13003 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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