Biocomplexity

  1. 2010
  2. Published

    Stress-specific response of the p53-Mdm2 feedback loop

    Hunziker, A. M., Jensen, Mogens Høgh & Krishna, S., 12 Jul 2010, In: BMC Systems Biology. 4, 94, 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Pair dispersion in shell model fields

    Jensen, Mogens Høgh & Chakraborty, S., 1 Apr 2010, In: Information Technology Interfaces. 2010

    Research output: Contribution to journalConference articleResearchpeer-review

  4. Published

    A Wnt oscillator model for somitogenesis

    Jensen, P. B., Pedersen, L., Krishna, S. & Jensen, Mogens Høgh, 17 Mar 2010, In: Biophysical Journal. 98, 6, p. 943-950 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Competition on the rocks: community growth and tessellation

    Jettestuen, E., Nermoen, A., Hestmark, G., Timdal, E. & Mathiesen, Joachim, 30 Sep 2010, In: P L o S One. 5, 9, p. e12820

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Genetic demixing and evolution in linear stepping stone models

    Korolev, K. S., Avlund, M., Hallatschek, O. & Nelson, D. R., 21 May 2010, In: Reviews of Modern Physics. 82, 2, p. 1691-1718 27 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Data collapse of the spectra of water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 5 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 3, p. 036323 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Role of HU in regulation of gal promoters: chapter 17 in Bacterial chromatin p.395-417, eds: C. Dorman and R.Dame

    Lewis...[et al.], D. E. A., Lee, S. J. & Semsey, S., 1 Dec 2010, Tyskland: Springer Science+Business Media. 22 p.

    Research output: Book/ReportBookResearchpeer-review

  9. Published

    Foundation of fractional Langevin equation: Harmonization of a many-body problem

    Lizana, G. L., Ambjørnsson, T., Taloni, A., Barkai, E. & Lomholt, M. A., 14 May 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 5, p. 051118 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Time walkers and spatial dynamics of ageing information

    Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Organizational structure and communication networks in a university environment

    Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

    Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Theory for the stability and regulation of epigenetic landscapes

    Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Interference of mesoscales in the critical behaviour of polystyrene-cyclohexane: heat capacity and mass density

    Mirzaev, S. Z., Heimburg, Thomas Rainer & Kaatze, U., 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, p. 061502 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Critical behavior of polystyrene-cyclohexane

    Mirzaev, S., Kaatze, U. & Heimburg, Thomas Rainer, 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, part 1, p. 061502 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Simple Interaction Model for Particlly Wet Granular Materials

    Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220

    Research output: Contribution to journalConference articleResearchpeer-review

  17. Published

    Complex and non-equlibrium physics: at Nordic workshop on statistical physics , biology

    Oddershede, L. B., 18 Mar 2010, Stockholm, Sverige

    Research output: Other contributionResearch

  18. Published

    Genome maintanace and consequences

    Oddershede, L. B., 5 Jun 2010, Dragør, DK.

    Research output: Other contributionResearch

  19. Published

    Institute Colloquium

    Oddershede, L. B., 16 Feb 2010, USA

    Research output: Other contributionResearch

  20. Published

    Institute Colloquium

    Oddershede, L. B., 15 Jun 2010, Dep. of Chemistry

    Research output: Other contributionResearch

  21. Published

    Institute Colloquium

    Oddershede, L. B., 15 Jan 2010, England

    Research output: Other contributionResearch

  22. Published

    N7 nanooptics

    Oddershede, L. B., 5 Sep 2010, Fuglesøcentert, Ebeltoft, DK.

    Research output: Other contributionResearch

  23. Published

    Photon 10

    Oddershede, L. B., 25 Aug 2010, Southampton University, GB. : American Institute of Physics.

    Research output: Other contributionResearch

  24. Published

    Squishy physics

    Oddershede, L. B., 18 Feb 2010, USA

    Research output: Other contributionResearch

  25. Published

    Real-time particle tracking at 10,000 fps using optical fiber illumination

    Otto, O., Czerwinski, F., Gornall, J. L., Stober, G., Oddershede, L. B., Seidel, R. & Keyser, U. F., 12 Oct 2010, In: Optics Express. 18, 22, p. 22722-22733 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Plasma proteome analysis of patients with type 1 diabetes with diabetic nephropathy

    Overgaard, A. J., Hansen, H. G., Lajer, M., Pedersen, L., Tarnow, L., Rossing, Peter, McGuire, J. N. & Pociot, Flemming, 2010, In: Proteome Science. 8, p. 4 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems

    Palarasah, Y., Skjødt, Mikkel-Ole, Vitved, L., Andersen, T. E., Skjoedt, K. & Koch, C., Mar 2010, In: Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Quantum dots as handles for optical manipulation

    Jauffred, Liselotte, Sletmoen, M., Czerwinski, F. & Oddershede, L. B., 27 Aug 2010, In: Proceedings of SPIE, the International Society for Optical Engineering. 7762

    Research output: Contribution to journalConference articleResearchpeer-review

  29. Published

    Two-photon quantum dot excitation during optical trapping

    Jauffred, Liselotte & Oddershede, L. B., 19 Apr 2010, In: Nano Letters. 10, 5, p. 1927-1930 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Characterization of the CI repressor protein encoded by the temperate lactococcal phage TP901-1

    Pedersen, M., Ligowska, M. & Hammer, K., 15 Apr 2010, In: Journal of Bacteriology. 192, 8, p. 2102-2110 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Coexistence and invasibility in a two-species competition model with habitat-preference

    Pigolotti, S. & Cencini, M., 21 Aug 2010, In: Journal of Theoretical Biology. 265, 4, p. 609-617 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Entropy production and coarse graining in Markov processes

    Puglisi, A., Rondoni, L., Vulpiani, A. & Pigolotti, S., 20 May 2010, In: Journal of Statistical Mechanics: Theory and Experiment. 2010, p. P05015 26 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Self-assembly based on hydrotropic counterion - Single-chain amphiphile ion pairs

    Rosholm, K. R., Gonzalez-Perez, Alfredo & Mouritsen, Ole G., 1 Oct 2010, In: Colloid and Polymer Science. 288, 14-15, p. 1351-1357 7 p.

    Research output: Contribution to journalReviewResearchpeer-review

  34. Published

    A minimal model for multiple epidemics and immunity spreading

    Sneppen, Kim, Trusina, Ala, Jensen, Mogens Høgh & Bornholdt, S., 18 Oct 2010, In: PLoS ONE. 5, 10, p. e13326

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Economy of operon formation: cotranscription minimizes shortfall in protein complexes

    Sneppen, Kim, Pedersen, Steen, Krishna, S., Dodd, I. B. & Semsey, S., 21 Sep 2010, In: Microbe. 1, 4, p. e00177-10

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Simplified models of biological networks

    Sneppen, Kim, Krishna, S. & Semsey, S., 4 Jan 2010, In: Annual Review of Biophysics and Biomolecular Structure. 9, 39, p. 43-59 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Quantitative analysis of single particle trajectories: mean maximal excursion method

    Tejedor...[et al.], V., Benichou, O., Voituriez, R. & Oddershede, L. B., 7 Apr 2010, In: Biophysical Journal. 98, 7, p. 1364-1372 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    The unfolded protein response and translation attenuation: a modelling approach.

    Trusina, Ala & Tang, C., Oct 2010, In: Diabetes, Obesity and Metabolism Online. 12, p. 27-31

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. 2011
  40. Published

    Fragmentation of fullerenes chapter 26 in Handbook of Nanophysics: Clusters and fullerences

    Albert, V. V., Chancey, R. T., Oddershede, L. B., Harris, F. E. & Sabin, J. R., 2011, CPC Press, Taylor & Francis Group ed. USA. (Handbook of Nanophysics).

    Research output: Book/ReportBookResearchpeer-review

  41. Published

    Biomimetic triblock copolymer membranes: from aqueous solutions to solid supports

    Gonzalez-Perez, Alfredo, Castelletto, V., Hamley, I. W. & Taboada, P., 1 Jan 2011, In: Soft Matter. 7, 3, p. 1129-1138

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Key players in the genetic switch of bacteriophage TP901-1.

    Alsing, A., Pedersen, M., Sneppen, Kim & Hammer, K., 19 Jan 2011, In: Biophysical Journal. 100, 2, p. 313-321 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Decreased material-activation of the complement system using low-energy plasma polymerized poly(vinyl pyrrolidone) coatings

    Andersen, T. E., Palarasah, Y., Skjødt, Mikkel-Ole, Ogaki, R., Benter, M., Alei, M., Kolmos, H. J., Koch, C. & Kingshott, P., Jul 2011, In: Biomaterials. 32, 20, p. 4481-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Optimizing active and passive calibration of optical tweezers

    Andersson, M., Czerwinski, F. & Oddershede, L. B., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044020

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Effect of Surface Morphology on the Dissipation During Shear and Slip Along a Rock-Rock Interface that Contains a Visco-elastic Core

    Angheluta, L., Candela, T., Renard, F. & Mathiesen, Joachim, 1 Dec 2011, In: Pure and Applied Geophysics. 168, 12, p. 2335-2344

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Zipf's law unzipped

    Baek, S. K., Minnhagen, P. & Bernhardsson, P. J. S., 7 Apr 2011, In: New Journal of Physics. 13, p. 043004

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes

    Bang-Berthelsen...[et al.], C. H., Pedersen, L., Flovel, T. & Hagedorn, P., 2011, In: B M C Genomics. 12

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Expanding the Optical Trapping Range of Lipid Vesicles to the Nanoscale

    Bendix, Poul Martin & Oddershede, L. B., 1 Dec 2011, In: Nano Letters. 11, 12, p. 5431-5437

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Expanding the optical trapping range of lipid vesicles to the nano-scale

    Bendix, Poul Martin & Oddershede, L. B., 2011, In: Nano Letters. 11, 12, p. 5431–5437 7 p.

    Research output: Contribution to journalLetterResearchpeer-review

  50. Published

    Direct and indirect effects in the regulation of overlapping promoters

    Bendtsen, K. M., Erdossy, J., Csiszovski, Z., Svenningsen, Sine Lo, Sneppen, Kim, Krishna, S. & Semsey, S., 2011, In: Nucleic Acids Research. 39, 16, p. 6879-6885 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Self-consistent method for density estimation

    Bernacchia, A. & Pigolotti, S., 1 Jan 2011, In: Journal of The Royal Statistical Society Series B-statistical Methodology. 73, Part 3, p. 407-422

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Structural correlations in bacterial metabolic networks

    Bernhardsson, P. J. S., Gerlee, P. D. M. & Lizana, G. L., 20 Jan 2011, In: B M C Evolutionary Biology. 11, p. 20

    Research output: Contribution to journalJournal articleResearchpeer-review

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