Biocomplexity

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  1. 2011
  2. Published

    Electrical aspects of lipid membranes

    Blicher, A., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen Denmark. 145 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Emergence and decline of scientific paradigms

    Bornholdt, S., Jensen, Mogens Høgh & Sneppen, Kim, 2 Feb 2011, In: Physical Review Letters. 106, 5, p. 058701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    On the contribution of statistical bias correction to the uncertainty in the projected hydrological cycle

    Chen, C., Härter, Jan Olaf Mirko, Hagemann, S. & Piani, C., 26 Oct 2011, In: Geophysical Research Letters. 38, p. L20403

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Ecological oscillations induced by a shared predator and the "Winner peaks first" rule

    Cordsen, P., Pigolotti, S. & Jensen, Mogens Høgh, 16 Sep 2011, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 84, 3, p. 031915

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Structure and Function of the D-Galactose Network in Enterobacteria

    Csiszovszki, Z., Krishna, S., Orosz, L., Adhya, S. & Semsey, S., 28 Jun 2011, In: mBio. 2, 4, p. e00053-11

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    TimesSeriesStreaming.VI: LabVIEW program for reliable data streaming of large analog time series

    Czerwinski, F. & Oddershede, L. B., 1 Feb 2011, In: Computer Physics Communications. 182, 2, p. 485-489 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Barriers and Silencers: A Theoretical Toolkit for Control and Containment of Nucleosome-Based Epigenetic States

    Dodd, I. B. & Sneppen, Kim, 9 Dec 2011, In: Journal of Molecular Biology. 414, 4, p. 624-637

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A bound particle coupled to two thermostats

    Fogedby, H. C. & Imparato, A., 1 May 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, p. P05015

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Quantifying how DNA stretches, melts and changes twist under tension

    Gross, P., Laurens, N., Oddershede, L. B., Bockelmann, U., Peterman, E. J. G. & Wuite, G. J. L., 1 Sep 2011, In: Nature Physics. 7, 9, p. 731-736

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Computational fluid dynamics simulations of flow and concentration polarization in forward osmosis membrane systems

    Gruber, M. F., Johnson, C. J., Tang, C. Y., Jensen, Mogens Høgh, Yde, L. & Helix-Nielsen, C., 1 Sep 2011, In: Journal of Membrane Science. 379, 1-2, p. 488-495

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Self-assembling drugs: A new therapeutic strategy

    Hassan, N., Ruso, J. M. & Gonzalez-Perez, Alfredo, 3 May 2011, In: Soft Matter. 7, 11, p. 5194-5199 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Targeted bacterial immunity buffres phage diversity

    Härter, Jan Olaf Mirko, Trusina, Ala & Sneppen, Kim, 21 Aug 2011, In: Journal of Virology. 85, 20, p. 10554-10560 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    In Vivo Anomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules

    Jeon, J., Tejedor, V., Barkai, E., Selhuber-Unkel, C. J. M., Oddershede, L. B., Berg-Sørensen, K. & Metzler, R., 25 Jan 2011, In: Physical Review Letters. 106, 4, p. 048103 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    AC Losses in Bi(2)Sr(2)Ca(2)Cu(3)O(10+x) Tapes and a 3.15-m-Long Single-Phase Cable

    Juul, J. S., Molgaard, E. T., Jensen, Jens, Andersen, N. H., Abrahamsen, A. B. & Traeholt...[et al.], C., 1 Dec 2011, In: IEEE Transactions on Applied Superconductivity. 21, 6, p. 3599-3603

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Locally self-organized quasicritical percolation in a multiple-disease model

    Juul, J. S. & Sneppen, Kim, 30 Sep 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 3, p. 0036119 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Heat Profiling of 3D Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., M. Bendix, P., Stamou, Dimitrios & Oddershede, L. B., 9 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., Bendix, Poul Martin, Stamou, Dimitrios & Oddershede, L. B., 11 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The stability of solitons in biomembranes and nerves

    Lautrup, B. E., Appali, R., Jackson, Andrew D. & Heimburg, Thomas Rainer, 9 Jun 2011, In: The European Physical Journal E: Soft Matter and Biological Physics. 34, 57, p. 11057 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Dissimilar bouncy walkers

    Lomholt, M. A. & Lizana, G. L., 28 Jan 2011, In: Journal of Chemical Physics. 134, 8, p. 045101

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Publisher's note: “Dissimilar bouncy walkers” [J. Chem. Phys. 134, 045101 (2011)]

    Lomholt, M. A., Lizana, G. L. & Ambjørnsson, T., 28 Feb 2011, In: Journal of Chemical Physics. 134, 8, p. 088902 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  23. Published

    Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity

    Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans

    Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    Shear Thickening Oscillation in a Dilatant Fluid

    Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Small-scale nonequilibrium systems

    Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  27. Published

    High-speed video-based tracking of optically trapped colloids

    Otto, O., Gornall, J. L., Stober, G., Czerwinski, F., Siedel, R. & Keyser, U. F., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044011

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Dickkopf1 - a new player in modelling the wnt pathway

    Pedersen, L., Krishna, S. & Jensen, Mogens Høgh, 12 Oct 2011, In: P L o S Computational Biology. 6, 10, p. e25550

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The functional half-life of an mRNA depends on the ribosome spacing in an early coding region

    Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    How Gaussian competition leads to lumpy or uniform species distributions

    Pigolotti, S., Lopez, C., Hermandez-Garcia, E. & Andersen, K. H., 1 May 2011, In: Theoretical Ecology. 3, 2, p. 89-96 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Symbolic dynamics in genetic oscillation patterns: Chapter in " The Complexity of dynamical systems: a multidisciplinary perspective" p.99-118, eds. Johan Dubbeldam, Kirk Green, Daan Lanstra

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2011, The Complexity of Dynamical systems: a multidisciplinary perspective. Wiley Publishing ed. USA: Wiley-VCH, p. 99-118 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  32. Published

    Use of small angle neutron scattering to study the interaction of angiotensin II with model membranes

    Preu, J., Jaeger, T., Garamus, V. M. & Gutberlet, T., 1 May 2011, In: European Biophysics Journal. 40, 5, p. 687-698

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Vesicle Fusion Observed by Content Transfer across a Tethered Lipid Bilayer

    Rawle, B., Lengerich, B., Cheung, M., Bendix, Poul Martin & Boxer, S., 19 Oct 2011, In: Biophysical Journal. 101, 8, p. L37-L39 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Arachidonic Acid Randomizes Endothelial Cell Motion and Regulates Adhesion and Migration

    Rossen, Ninna Struck, Hansen, A., Oddershede, L. B. & Selhuber-Unkel, C. J. M., 23 Sep 2011, In: PLoS ONE. 6, 9, p. e25196

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Dynamical TAP equations for non-equilibrium Ising spin glasses

    Roudi, Y. & Hertz, John, 31 Mar 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, 3, p. P03031 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Mean Field Theory for Nonequilibrium Network Reconstruction

    Roudi, Y. & Hertz, John, 28 Jan 2011, In: Physical Review Letters. 106, 4, p. 048701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The Value of Example Solutions in Pharmacy Education: The role of seniority and gender.

    Sandelin, Albin Gustav, Hansen, H. R., Baldursdóttir, S. G., Kristensen, Anders Skov, Bak, Lasse Kristoffer, Christiansen, Frederik Voetmann & Selhuber-Unkel, C. J. M., 2011, In: Pharmacy Education. 11, 1, p. 32-37 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Conformation Regulation of the X Chromosome Inactivation Center: a model

    Scialdone, A., Cataudella, I., Barbieri, M. & Nicodemi, M., 1 Oct 2011, In: P L o S Computational Biology. 7, 10, p. e1002229

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Significant improvement of optical traps by tuning standard water immersion objectives

    Seyyed Reihani, S. N., Richardson, A. C. & Oddershede, L. B., 1 Oct 2011, In: Journal of Optics. 13, 10, p. 105301

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Static and Dynamic Disorder Observed in the Phase Transition Behavior of Individual Small Unilamellar Vesicles

    Stamou, Dimitrios, Bendix, Poul Martin, Wibroe, P. P. & Hatzakis, Nikos, 2011, In: Biophysical Journal. 100, 3 suppl 1, p. 35a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  41. Published

    Periodic solutions and refractory periods in the soliton theory for nerves and the locust femoral nerve

    Vargas, V., Ludu, A., Hustert, R., Gumrich, P., Jackson, Andrew D. & Heimburg, Thomas Rainer, 1 Jan 2011, In: Biophysical Chemistry. 153, 2-3, p. 159-167 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Analyzing inflammatory response as excitable media

    Yde, Pernille, Jensen, Mogens Høgh & Trusina, Ala, 18 Nov 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 5, Part 1, p. 051913

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Modeling the NF-kappa B mediated inflammatory response predicts cytokine waves in tissue

    Yde, Pernille, Mengel, A. B., Jensen, Mogens Høgh, Krishna, S. & Trusina, Ala, 19 Jul 2011, In: BMC Systems Biology. 5, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. 2012
  45. Published

    Models of epigenetics: BI-   and multi-stability in biological systems

    Alsing, A., 1 Nov 2012, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  46. Published

    Compaction of porous rock by dissolution on discrete stylolites: A one-dimensional model

    Angheluta, L., Mathiesen, Joachim & Aharonov, E., 10 Aug 2012, In: Journal of Geophysical Research: Biogeosciences. 117, p. B08203 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Organic-inorganic nanocomposite gels as an in situ gelation biomaterial for injectable accommodative intraocular lens

    Annaka, M., Mortensen, Kell, Matsuura, T., Ito, M., Nochioka, K. & Ogata, N., 2012, In: Soft Matter. 8, 27, p. 7185-7196 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A comparison of the Hodgkin-Huxley model and the soliton theory for the action potential in nerves

    Appali, R., van Rienen, U. & Heimburg, Thomas Rainer, 2012, In: Advances in Planar Lipid Bilayers and Liposomes. 16, p. 275-299

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Soliton collision in biomembranes and nerves - A stability study.

    Appali, R., Lautrup, B. E., Heimburg, Thomas Rainer & van Rienen, U., 2012, In: Journal of Mathematics in Industry. 16, p. 205-212

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Correction to; Why Do Phage Play Dice? (vol 83, pg 11416, 2009)

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 1 Mar 2012, In: Journal of Virology. 86, 5, p. 22898-2898 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  51. Published

    Danske Universiteter 2020: Hvidbog til Forskningspolitisk årsmøde 2012, Det Kongelige Danske Videnskabernes Selskab

    Bache, C., Christiansen, F. B., Løkke, Anne, Smith, N. & Sneppen, Kim, 2012, Det Kongelige Danske Videnskabernes Selskab. 50 p.

    Research output: Book/Report › Report › Commissioned

  52. Published

    Fragile DNA Repair Mechanism Reduces Ageing in Multicellular Model

    Bendtsen, K. M., Juul, J. S. & Trusina, Ala, 2 May 2012, In: P L o S One. 7, 5, p. e36018

    Research output: Contribution to journal › Journal article › Research › peer-review

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