Biocomplexity

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  1. Published

    Collective rotational motion of freely expanding T84 epithelial cell colonies

    Ascione, F., Caserta, S., Esposito, S., Rachela, V. V., Maiuri, L., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Guido, S., 22 Feb 2023, In: Journal of the Royal Society Interface. 20, 199, 12 p., 20220719.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Constrained information flows in temporal networks reveal intermittent communities

    Aslak, U., Rosvall, M. & Jørgensen, Sune Lehmann, 22 Jun 2018, In: Physical Review E. 97, 6, 11 p., 062312.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Cerebral infarction after fractionated stereotactic radiation therapy of benign anterior skull base tumors

    Astradsson, A., af Rosenschold, P. M., Poulsgaard, L., Ohlhues, L., Engelholm, S. A., Feldt-Rasmussen, Ulla, Marsh, R., Roed, H. & Juhler, Marianne, 7 Feb 2019, In: Clinical and Translational Radiation Oncology. 15, p. 93-98

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Tumor spheroids accelerate persistently invading cancer cells

    Audoin, M., Sogaard, M. T. & Jauffred, Liselotte, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14713.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Dynamics of growth: decisions in phages & gene segregation in bacteria

    Avlund, M., 2009, Niels Bohr Institute: Museum Tusculanum. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Why do phage play dice?

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

    Avlund, M., Krishna, S., Semsey, S., Dodd, I. B. & Sneppen, Kim, 20 Dec 2010, In: PLoS ONE. 5, 12, p. 0015037 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Observation of periodic orbits on curved two-dimensional geometries

    Avlund, M., Ellegaard, Clive Sigurd, Oxborrow, M. & Søndergaard, N., 23 Apr 2010, In: Physical Review Letters. 104, 16, p. 164101 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Correction to; Why Do Phage Play Dice? (vol 83, pg 11416, 2009)

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 1 Mar 2012, In: Journal of Virology. 86, 5, p. 22898-2898 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  10. Published

    Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda

    Avlund, M., Dodd, I. B., Sneppen, Kim & Krishna, S., 11 Dec 2009, In: Journal of Molecular Biology. 394, 4, p. 681-693

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The cost and capacity of signaling in the Escherichia coli proetin reaction network

    Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Degree landscapes in scale-free networks

    Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, Kim & Trusina, Ala, Sep 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Quantifying the benefits of translation regulation in the unfolded protein response

    Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Minimizing Late Effects for Patients With Mediastinal Hodgkin Lymphoma: Deep Inspiration Breath-Hold, IMRT, or Both?

    Aznar, M. C., Maraldo, M. V., Schut, D. A., Lundemann, M., Brodin, N. P., Vogelius, Ivan R. , Berthelsen, A. K., Specht, Lena & Petersen, P. M., 1 May 2015, In: International Journal of Radiation Oncology, Biology, Physics. 92, 1, p. 169-174

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Irregular breathing during 4DCT scanning of lung cancer patients: Is the midventilation approach robust?

    Aznar, M. C., Persson, Gitte F., Kofoed, I. M., Nygaard, D. E. & Korreman, S. S., 1 Feb 2014, In: Physica Medica. 30, 1, p. 69-75

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    SINGLE-NEUTRON STATES AT HIGH SPINS IN YTTERBIUM NUCLEI - EVIDENCE FOR THE QUENCHING OF STATIC NEUTRON PAIR CORRELATIONS

    BACELAR, J., DIEBEL, M., Ellegaard, Clive Sigurd, GARRETT, J., Hagemann, G. B., HERSKIND, B., HOLM, A., YANG, C., ZHANG, J., TJOM, P. & LISLE, J., 1 Apr 1985, In: Nuclear Physics A: Nuclear and Hadronic Physics. 442, 3, p. 509-546

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    1ST OBSERVATION OF THE DELTA-RESONANCE IN RELATIVISTIC HEAVY-ION CHARGE-EXCHANGE REACTIONS

    BACHELIER, D., BOYARD, J., HENNINO, T., JOURDAIN, J., ROYSTEPHAN, M., CONTARDO, D., GROSSIORD, J., GUICHARD, A., PIZZI, J., RADVANYI, P., TINSLEY, J., Ellegaard, Clive Sigurd, GAARDE, C. & LARSEN, J., 8 May 1986, In: Physics Letters B: Particle Physics, Nuclear Physics and Cosmology. 172, 1, p. 23-26

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    THE (HE-3,T) REACTION AT INTERMEDIATE ENERGIES - SPIN-ISOSPIN TRANSITIONS TO STATES IN N-12 AND N-13

    BERGQVIST, I., BROCKSTEDT, A., CARLEN, L., EKSTROM, LP., JAKOBSSON, B., ELLEGAARD, C., GAARDE, C., LARSEN, JS., GOODMAN, C., BEDJIDIAN, M., CONTARDO, D., GROSSIORD, JY., GUICHARD, A., HAROUTUNIAN, R., PIZZI, JR., BACHELIER, D., BOYARD, JL., HENNINO, T., JOURDAIN, JC., ROYSTEPHAN, M. & 2 others, BOIVIN, M. & RADVANYI, P., 10 Aug 1987, In: Nuclear Physics A: Nuclear and Hadronic Physics. 469, 4, p. 648-668

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Danske Universiteter 2020: Hvidbog til Forskningspolitisk årsmøde 2012, Det Kongelige Danske Videnskabernes Selskab

    Bache, C., Christiansen, F. B., Løkke, Anne, Smith, N. & Sneppen, Kim, 2012, Det Kongelige Danske Videnskabernes Selskab. 50 p.

    Research output: Book/Report › Report › Commissioned

  21. Published

    Zipf's law unzipped

    Baek, S. K., Minnhagen, P. & Bernhardsson, P. J. S., 7 Apr 2011, In: New Journal of Physics. 13, p. 043004

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Remotely controlled fusion of selected vesicles and living cells: a key issue review

    Bahadori, Azra, Moreno Pescador, Guillermo Sergio, Oddershede, L. B. & Bendix, Poul Martin, 25 Jan 2018, In: Reports on Progress in Physics. 81, 3, 26 p., 032602.

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Fusion of Selected Cells and Vesicles Mediated by Optically Trapped Plasmonic Nanoparticles

    Bahadori, Azra, 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 161 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Controlled Cellular fusion using optically trapped Plasmonic Nano-Heaters

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 28 Aug 2016, In: Proceedings of the SPIE. 9922

    Research output: Contribution to journal › Conference article › Research › peer-review

  25. Published

    Optically controlled and selective fusion of cells and vesicles using plasmonic nano-heaters

    Bahadori, Azra, Oddershede, L. B. & Bendix, Poul Martin, 19 May 2017, Light Robotics - Structure-mediated Nanobiophotonics. Glückstad, J. & Palima, D. (eds.). Elsevier, 30 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  26. Published

    Hot-nanoparticle-mediated fusion of selected cells

    Bahadori, Azra, Oddershede, L. B. & Bendix, Poul Martin, 31 May 2017, In: Nano Research. 10, 6, p. 2034-2045

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Remotely controlled fusion of selected vesicles and living cells

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 15 Dec 2017, In: Proceedings of SPIE. 9922, p. 992211-1

    Research output: Contribution to journal › Conference article › Research › peer-review

  28. Published

    Direct chemical induction of hepatocyte-like cells with capacity for liver repopulation

    Bai, Y., Yang, Z., sgk681, sgk681, Ding, W., Qi, J., Liu, F., Wang, X., Zhou, B., Zhang, W., Zhuang, X., Li, G. & Zhao, Y., 1 May 2023, In: Hepatology. 77, 5, p. 1550-1565 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Thermodynamics of proteins: Fast folders and sharp transitions

    Bakk, A., Dommersnes, P. G., Hansen, A., Høye, J. S., Sneppen, Kim & Jensen, Mogens Høgh, 1 Jan 2002, In: Computer Physics Communications. 147, 1-2, p. 307-312 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Investigating the nature of active forces in tissues reveals how contractile cells can form extensile monolayers

    Balasubramaniam, L., Doostmohammadi, Amin, Saw, T. B., Narayana, G. H. N. S., Mueller, R., Dang, T., Thomas, M., Gupta, S., Sonam, S., Yap, A. S., Toyama, Y., Mege, R., Yeomans, J. M. & Ladoux, B., 18 Feb 2021, In: Nature Materials. 20, 8, p. 1156-1166 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes

    Bang-Berthelsen...[et al.], C. H., Pedersen, L., Flovel, T. & Hagedorn, P., 2011, In: B M C Genomics. 12

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Changes in Cell Morphology and Actin Organization in Embryonic Stem Cells Cultured under Different Conditions

    Farhangibarooji, Younes, Hvid, K. G., Petitjean, I. I., Brickman, Joshua Mark, Oddershede, L. B. & Bendix, Poul Martin, 2021, In: Cells. 10, 11, 16 p., 2859.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    An investigation on methods for free-field comparison calibration of measurement microphones

    Barrera Figueroa, S., Moreno Pescador, Guillermo Sergio, Jacobsen, F., Rasmussen, K., Cutanda Henriquez, V. & Juhl, P. M., 2010, Proceedings of Internoise 2010: 39th International Congress and Exposition on Noise Control Engineering - Lisbon, Portugal Duration:,15 Jun 2010 → 16 Jun 2010. Portugal, Lisbon, Vol. 39. p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  34. Published

    Flow effects in intermediate-energy nuclear collisions

    Barz, H. W., Bondorf, J. P., Donangelo, R., Elmér, R., Hansen, F. S., Jakobsson, B., Karlsson, L., Nifenecker, H., Schulz, H., Schussler, F., Sneppen, Kim & Söderström, K., 2 Sep 1991, In: Nuclear Physics, Section A. 531, 2, p. 453-460 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Belief propagation and replicas for inference and learning in a kinetic Ising model with hidden spins

    Battistin, C., Hertz, John, Tyrcha, J. & Roudi, Y., 10 May 2015, In: Journal of Statistical Mechanics: Theory and Experiment. 2015, P05021.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Protocol to assess metabolic activity of Pseudomonas aeruginosa by measuring heat flow using isothermal calorimetry

    Beilharz, K., Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim, Bjarnsholt, Thomas & Lichtenberg, Mads, 2023, In: STAR Protocols. 4, 2, 102269.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Development of radiotracers for Vps10p domain (neurotensin-3) receptors

    Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, Albert, 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Direct measurements of heating by electromagnetically trapped gold nanoparticles on supported lipid bilayers

    Bendix, Poul Martin, Seyyed Reihani, S. N. & Oddershede, L. B., 6 Apr 2010, In: ACS Nano. 4, 4, p. 2256-2262 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Interdisciplinary Synergy to Reveal Mechanisms of Annexin-Mediated Plasma Membrane Shaping and Repair

    Bendix, Poul Martin, Simonsen, A. C., Florentsen, C. D., Häger, S. C., Mularski, A., Zanjani, A. A. H., Moreno Pescador, Guillermo Sergio, Klenow, M. B., Sønder, S. L., Danielsen, Helena Maria Dávidsdóttir, Arastoo, M. R., Heitmann, A. S., Pandey, M. P., Lund, F. W., Dias, C., Khandelia, H. & Nylandsted, J., 21 Apr 2020, In: Cells. 9, 4, 13 p., 1029.

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    Effect of membrane curvature on lateral distribution of membrane proteins

    Bendix, Poul Martin, 2015

    Research output: Other contribution › Research

  41. Published

    Optical trapping inside living organisms

    Bendix, Poul Martin & Oddershede, L. B., 2005, In: SPIE Proceedings. 5930, 9 p., 593003.

    Research output: Contribution to journal › Conference article › Research › peer-review

  42. Published

    tweezercalib 2.0: faster version of Matlab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Berg-Sørensen, K., 2006, In: Computer Physics Communications. 174, 6, p. 518-520 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. K. & Berg-Sørensen, K., 15 Oct 2006, In: Computer Physics Communications. 174, 8, p. 572-573

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Optical properties of nanoparticles

    Bendix, Poul Martin, 2015, København, Danmark

    Research output: Other contribution › Research

  45. Published

    Expanding the Optical Trapping Range of Lipid Vesicles to the Nanoscale

    Bendix, Poul Martin & Oddershede, L. B., 1 Dec 2011, In: Nano Letters. 11, 12, p. 5431-5437

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Membrane fusion

    Bendix, Poul Martin, 2015, California, USA

    Research output: Other contribution › Research

  47. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Sørensen, K. B., 2006, In: Computer Physics Communications. 175, 18, p. 572-573 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Quantification of nano-scale intermembrane contact areas using fluorescence resonance energy transfer

    Bendix, Poul Martin, Pedersen, M. S. & Stamou, Dimitrios, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 30, p. 12341-12346 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A quantitative analysis of contractility in active cytoskeletal protein networks

    Bendix, Poul Martin, Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Novel optical and statistical methods reveal colloid-wall interactions inconsistent with DLVO and Lifshitz theories

    Bendix, Poul Martin, Dreyer, J. K. K., Ferkinghoff-Borg, J. & Oddershede, L. B., 2005, In: Journal of Colloid and Interface Science. 287, 2, p. 561-571

    Research output: Contribution to journal › Journal article › Research › peer-review

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