Biocomplexity

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A supra-cellular model for coupling of bone resorption to formation during remodeling: lessons from two bone resorption inhibitors affecting bone formation differently
Jensen, P. R., Andersen, T. L., Pennypacker, B. L., Duong, L. T., Engelholm, Lars Henning & Delaissé, J., 10 Jan 2014, In: Biochemical and Biophysical Research Communications. 443, 2, p. 694-9 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
In Vivo Anomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules
Jeon, J., Tejedor, V., Barkai, E., Selhuber-Unkel, C. J. M., Oddershede, L. B., Berg-Sørensen, K. & Metzler, R., 25 Jan 2011, In: Physical Review Letters. 106, 4, p. 048103 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Competition on the rocks: community growth and tessellation
Jettestuen, E., Nermoen, A., Hestmark, G., Timdal, E. & Mathiesen, Joachim, 30 Sep 2010, In: P L o S One. 5, 9, p. e12820
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Anomalous diffusion and power-law relaxation of the time averaged mean squared displacement in worm-like micellar solutions
Joen, J., Leijnse, Natascha, Oddershede, L. B. & Metzler, R., 17 Apr 2013, In: New Journal of Physics. 15, p. 045011
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic phases in a spring-block system
Johansen, A., Dimon, P., Ellegaard, Clive Sigurd, Larsen, J. S. & Rugh, H. H., 1 Dec 1993, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 48, 6, p. 4779-4790
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Diffusion behaviour of lead implanted into aluminium
Johansen, A., Johnson, Erik, Sarholt-Kristensen, L., Steenstrup, S., Yu, L. D. & Bourdelle, K. K., 1992, In: Surface and Coatings Technology. 51, p. 461-465
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Angular distributions of sputtered particles from Lithium-implanted Aluminium and Copper crystals
Johansen, A., Johnson, Erik, Sarholt-Kristensen, L., Steenstrup, S., Andersen, H. H., Buhanov, V. M., Chernysh, V. S. & Minnebaev, K. F., 1991, In: Nuclear Instruments and Methods in Physics Reseach B. 61, p. 21-26
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optimal investment horizons for stocks and markets
Johansen, A., Simonsen, I. & Jensen, Mogens Høgh, 2006, In: Physica A: Statistical Mechanics and its Applications. 1, p. 64-67
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Injectable Colloidal Gold in a Sucrose Acetate Isobutyrate Gelating Matrix with Potential Use in Radiation Therapy
Jolck, R. I., Binderup, Tina, Hansen, A. E., Scherman, J. B., Munck af Rosenschöld, P. M., Kjær, Andreas & Andresen, T. L., 1 Oct 2014, In: Advanced Healthcare Materials. 3, 10, p. 1680-1687
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Alveolar cytokines and interferon autoantibodies in COVID-19 ARDS
Jonassen, T. B., Jørgensen, S. E., Mitchell, N. H., Mogensen, T. H., Berg, Ronan Martin Griffin, Ronit, A. & Plovsing, Ronni Thermann Reitz, 2024, In: Frontiers in Immunology. 15, 9 p., 1353012.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Deep inspiration breath hold radiotherapy of lung cancer: The good, the bad and the ugly case
Josipovic, Mirjana, Aznar, M. C. & Persson, Gitte F., 1 Oct 2014, In: Acta Oncologica. 53, 10, p. 1446-+
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Deep inspiration breath hold radiotherapy for locally advanced lung cancer: Comparison of different treatment techniques on target coverage, lung dose and treatment delivery time
Josipovic, Mirjana, Persson, Gitte F., Hakansson, K., Bangsgaard, J. P., Damkjær, S. M., Westman, G., Specht, Lena & Aznar, M. C., 1 Oct 2013, In: Acta Oncologica. 52, 7, p. 1582-1586
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cumulants of Hawkes point processes
Jovanovic, S., Hertz, John & Rotter, S., 7 Apr 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 91, 4, 9 p., 042802.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatial Models and Networks of Living Systems
Juul, J. S., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 156 p.
Research output: Book/Report › Ph.D. thesis
Published
Labyrinthine clustering in a spatial rock-paper-scissors ecosystem
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 8 Apr 2013, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 87, 4, p. 042702 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Replicator dynamics with turnover of players
Juul, J. S., Kianercy, A., Bernhardsson, S. & Pigolotti, S., 8 Aug 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 88, 2, 9 p., 022806.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Locally self-organized quasicritical percolation in a multiple-disease model
Juul, J. S. & Sneppen, Kim, 30 Sep 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 3, p. 0036119 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
AC Losses in Bi(2)Sr(2)Ca(2)Cu(3)O(10+x) Tapes and a 3.15-m-Long Single-Phase Cable
Juul, J. S., Molgaard, E. T., Jensen, Jens, Andersen, N. H., Abrahamsen, A. B. & Traeholt...[et al.], C., 1 Dec 2011, In: IEEE Transactions on Applied Superconductivity. 21, 6, p. 3599-3603
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Group-specific behavior change following terror attacks
Juul, J. L., Alessandretti, L., Dammeyer, Jesper, Zettler, Ingo, Jørgensen, Sune Lehmann & Mathiesen, Joachim, Apr 2023, In: Journal of Computational Social Science. 6, p. 1-18
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Entrainment as a means of controlling phase waves in populations of coupled oscillators
Juul, J. S., Krishna, S. & Jensen, Mogens Høgh, 21 Dec 2018, In: Physical Review E. 98, 6, 9 p., 062412.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Descendant distributions for the impact of mutant contagion on networks
Juul, J. S. & Strogatz, S. H., 1 Jul 2020, In: Physical Review Research. 2, 3, 6 p., 033005.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synergistic effects in threshold models on networks
Juul, J. S. & Porter, M. A., 1 Jan 2018, In: Chaos. 28, 1, 12 p., 013115.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Isospectral discrete and quantum graphs with the same flip counts and nodal counts
Juul, J. S. & Joyner, C. H., 15 Jun 2018, In: Journal of Physics A: Mathematical and Theoretical. 51, 24, 15 p., 245101.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Constraints on somite formation in developing embryos
Juul, J. S., Jensen, Mogens Høgh & Krishna, S., 4 Sep 2019, In: Journal of the Royal Society. Interface. 16, 158, 9 p., 20190451.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Synchronisation, shocks and contagion in a connected world
Juul, J. S., 2019, Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Hipsters on networks: How a minority group of individuals can lead to an antiestablishment majority
Juul, J. S. & Porter, M. A., 26 Feb 2019, In: Physical Review E. 99, 18 p., 022313.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The effect on esophagus after different radiotherapy techniques for early stage Hodgkin's lymphoma
Jørgensen, A., Maraldo, M., Brodin, N. P., Aznar, M. C., Voglius, I. R., Petersen, P. M., Munck af Rosenschöld, P. M. & Specht, Lena, 1 Oct 2013, In: Acta Oncologica. 52, 7, p. 1559-1565
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single Particle and PET-based Platform for Identifying Optimal Plasmonic Nano-Heaters for Photothermal Cancer Therapy
Jørgensen, Jesper Tranekjær, Nørregaard, K., Tian, P., Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 2016, In: Scientific Reports. 6, 10 p., 30076.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Non-invasive Early Response Monitoring of Nanoparticle-assisted Photothermal Cancer Therapy Using 18F-FDG, 18F-FLT, and 18F-FET PET/CT Imaging
Jørgensen, Jesper Tranekjær, Nørregaard, K., Simon Martin, M., Oddershede, L. B. & Kjær, Andreas, 27 Apr 2018, In: Nanotheranostics. 2, 3, p. 201-210
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Constructing universal phenomenology for biological cellular systems: an idiosyncratic review on evolutionary dimensional reduction
Kaneko, Kunihiko, 13 Feb 2024, In: Journal of Statistical Mechanics: Theory and Experiment. 2024, 2, 21 p., 024002.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Academic performance and behavioral patterns
Kassarnig, V., Mones, E., Bjerre-Nielsen, Andreas, Sapiezynski, P., Lassen, David Dreyer & Lehmann, S., 24 Apr 2018, In: EPJ Data Science. 7, 16 p., 10.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Class attendance, peer similarity, and academic performance in a large field study
Kassarnig, V., Bjerre-Nielsen, Andreas, Mones, E., Lehmann, S. & Lassen, David Dreyer, 8 Nov 2017, In: PLOS ONE. 12, 11, p. 1-15 15 p., e0187078.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Shear and Rapeseed Oil Addition Affect the Crystal Polymorphic Behavior of Milk Fat
Kaufmann, N., Kirkensgaard, Jacob Judas Kain, Andersen, U. & Wiking, L., 1 Jun 2013, In: Journal of the American Oil Chemists' Society. 90, 6, p. 871-880
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Digital signaling decouples activation probability and population heterogeneity
Kellogg, R. A., Tian, C., Lipniacki, T., Quake, S. R. & Tay, S., 2015, In: eLife. 4, e08931.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cellular Decision Making by Non-Integrative Processing of TLR Inputs
Kellogg, R. A., Tian, C., Etzrodt, M. & Tay, S., 4 Apr 2017, In: Cell Reports. 19, 1, p. 125-135
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic instabilities induced by asymmetric influence: Prisoners' dilemma game in small-world networks
Kim, B., Trusina, Ala, Holme, P., Minnhagen, P., Chung, J. & Choi, M., Aug 2002, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 66, 2, 021907.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning
Kirkeby, Carsten, Græsbøll, K., Halasa, T., Sneppen, Kim & Christiansen, L. E., 2020, In: Ingenøren.dk.
Research output: Contribution to journal › Journal article › Communication
Published
Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Airborne Pathogens in a Heterogeneous World: Superspreading & Mitigation
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 Oct 2020, In: medRxiv : the preprint server for health sciences. 9 p.
Research output: Contribution to journal › Journal article › Research
Published
Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19
Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Superspreading quantified from bursty epidemic trajectories
Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Emerging diversity in a population of evolving intransitive dice
Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Superspreading of airborne pathogens in a heterogeneous world
Kirkegaard, Julius Bier, Mathiesen, Joachim & Sneppen, Kim, 27 May 2021, In: Scientific Reports. 11, 1, 9 p., 11191.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optimal Transport Flows for Distributed Production Networks
Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Curvature strains as a global orchestrator of morphogenesis
Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations
Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The influence of vesicle size and composition on alpha-synuclein structure and stability
Kjær, L., Giehm, L., Otzen, D. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 7, p. 2857-2870 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Uptake of gold nanoparticles in primary human endothelial cells
Klingberg, H., Oddershede, L. B., Loeschner, K., Larsen, E. H., Loft, Steffen & Møller, Peter, 1 Feb 2015, In: Toxicology Research. 4, 3, p. 655-666
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The influence of flow, shear stress and adhesion molecule targeting on gold nanoparticle uptake in human endothelial cells
Klingberg, H., Loft, Steffen, Oddershede, L. B. & Møller, Peter, 1 Feb 2015, In: Nanoscale. 7, 26, p. 11409-11419
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation
Knudsen, Teresa Emmilie Toudal, Hamilton, W. B., Proks, Martin, Lykkegaard, M., Linneberg-Agerholm, Madeleine, Nielsen, Alexander Valentin, Perera Pérez, Marta, Malzard, L. L., Trusina, Ala & Brickman, Joshua Mark, 2023, In: Cell Systems. 14, 9, p. 788-805.e8
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An active biopolymer network controlled by molecular motors
Koenderink, G. H., Dogic, Z., Nakamura, F. & Bendix, Poul Martin, 8 Sep 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 36, p. 15192-15197 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Epidemic modelling of monitoring public behavior using surveys during pandemic-induced lockdowns
Koher, A., Jørgensen, F., Petersen, M. B. & Lehmann, S., 2023, In: Communications Medicine. 3, 1, 10 p., 80.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory
Kohsokabe, T., Kuratanai, S., Kaneko, Kunihiko & Maini, P. K. (ed.), 29 Feb 2024, In: PLOS Computational Biology. 20, 2, 24 p., e1011867.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Loewner driving functions for off-critical percolation clusters
Kondo, Y., Mitarai, Namiko & Nakanishi, H., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 050102
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Homophily-Based Social Group Formation in a Spin Glass Self-Assembly Framework
Korbel, J., Lindner, S. D., Pham, Minh Tuan, Hanel, R. & Thurner, S., 30 Jan 2023, In: Physical Review Letters. 130, 5, 6 p., 057401.
Research output: Contribution to journal › Letter › Research › peer-review
Published
Use of PET/CT instead of CT-only when planning for radiation therapy does not notably increase life years lost in children being treated for cancer
Kornerup, J. S., Brodin, N. P., Christensen, C. B., Bjork-Eriksson, T., Kiil-Berthelsen, A., Borgwardt, L. & af Rosenschold, P. M., Apr 2015, In: Pediatric Radiology. 45, 4, p. 570-581
Research output: Contribution to journal › Journal article › Research › peer-review
Published
PET/CT-guided treatment planning for paediatric cancer patients: a simulation study of proton and conventional photon therapy
Kornerup, J. S., Brodin, N. P., Bjork-Eriksson, T., Christensen, C. B., Kiil-Berthelsen, A., Aznar, M. C., Hollensen, C., Markova, E. & Af Rosenschold, P. M., 1 Mar 2015, In: British Journal of Radiology. 88, 1047, 20140586.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic demixing and evolution in linear stepping stone models
Korolev, K. S., Avlund, M., Hallatschek, O. & Nelson, D. R., 21 May 2010, In: Reviews of Modern Physics. 82, 2, p. 1691-1718 27 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A monomer-trimer model supports intermittent glucagon fibril growth
Kosmrlj, A., Cordsen, P., Kyrsting, A., Otzen, D., Oddershede, L. B. & Jensen, Mogens Høgh, 11 Mar 2015, In: Scientific Reports. 5, 9005.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence
Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic operation of optical fibres beyond the single-mode regime facilitates the orientation of biological cells
Kreysing, M., Ott, D., Schmidberger, M. J., Otto, O., Schuermann, M., Martin-Badosa, E., Whyte, G. & Guck, J., 1 Nov 2014, In: Nature Communications. 5, 5481.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spiky oscillations in NF-KB signalling
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli
Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Signalling and Feedback in Biological Networks
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Frustrated bistability as a means to engineer oscillations in biological systems
Krishna, S., Semsey, S. & Jensen, Mogens Høgh, 2009, In: Physical Biology. 6, 3, p. 036009
Research output: Contribution to journal › Journal article › Research › peer-review
Published
UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model
Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Structure and function of negative feedback loops at the interface of genetic and metabolic networks
Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cold pools over the Netherlands: A statistical study from tower and radar observations
Kruse, Irene Livia, Härter, Jan Olaf Mirko & Meyer, B., 27 Dec 2021, In: Quarterly Journal of the Royal Meteorological Society. 148, 743, p. 711-726 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Solvable neural network model for input-output associations: Optimal recall at the onset of chaos
Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mapping 3D focal intensity exposes the stable trapping positions of single nanoparticles
Kyrsting, A., Bendix, Poul Martin & Oddershede, L. B., 9 Jan 2013, In: Nano Letters. 13, 1, p. 31-35 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Heat Profiling of 3D Optically Trapped Gold Nanoparticles using Vesicle Cargo Release
Kyrsting, A., M. Bendix, P., Stamou, Dimitrios & Oddershede, L. B., 9 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release
Kyrsting, A., Bendix, Poul Martin, Stamou, Dimitrios & Oddershede, L. B., 11 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Photothermal heating of optically trapped gold nanoparticles quantified using controlled vesicle cargo release: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA )
Kyrsting, A. H., Bendix, Poul Martin & Oddershede, L. B., 1 Oct 2012, In: Proceedings of SPIE. 8458, p. 84580X
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Using Focal Point Intensity Distributions to Track Nanoparticle Positions an Fibril Networks
Kyrsting, A. H., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
STUDY OF HIGH-SPIN HOLE STATES IN ND-143
LOVHOIDEN, G., ELKAZZAZ, S., LIEN, J., HEYDE, K., REKSTAD, J., Ellegaard, Clive Sigurd, BJERREGAARD, J., KNUDSEN, P. & KLEINHEINZ, P., 25 Apr 1988, In: Nuclear Physics A: Nuclear and Hadronic Physics. 481, 1, p. 71-80
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A 3 ' External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise
Lalaouna, D., Carrier, M., Semsey, S., Brouard, J., Wang, J., Wade, J. T. & Masse, E., 7 May 2015, In: Molecular Cell. 58, 3, p. 393-405
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis
Larsen, Hjalte List, Martin-Coll, L., Nielsen, Alexander Valentin, Wright, C. V. E., Trusina, Ala, Kim, Y. H. & Grapin-Botton, A., 19 Sep 2017, In: Nature Communications. 8, 605.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
How Membrane Geometry Regulates Protein Sorting Independently of Mean Curvature
Larsen, J. B., Rosholm, K. R., Kennard, C., Pedersen, S. L., Munch, H. K., Tkach, Vadym, Sakon, J. J., Bjornholm, T., Weninger, K. R., Bendix, Poul Martin, Jensen, Knud Jørgen, Hatzakis, Nikos, Uline, M. J. & Stamou, Dimitrios, 2020, In: ACS Central Science. 6, 7, p. 1159-1168 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The geometry of evolved community matrix spectra
Lastad, S. B. & Härter, Jan Olaf Mirko, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14668.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Comparing ion conductance recordings of synthetic lipid bilayers with cell membranes containing TRP channels
Laub, K. R., Witschas, K., Blicher, A., Madsen, S. B., Lückhoff, A. & Heimburg, Thomas Rainer, 2012, In: BBA General Subjects. 1818, 5, p. 1123-1134
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Selection by pairwise comparisons with limited resources
Laureti, P., Mathiesen, Joachim & Zhang, Y. C., 15 Jul 2004, In: Physica A: Statistical Mechanics and its Applications. 338, 3-4, p. 596-604 9 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
The stability of solitons in biomembranes and nerves
Lautrup, B., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2005, In: arXiv.org: Physics. arXiv:Physics/0510106, 7 p.
Research output: Contribution to journal › Journal article › Research
Published
The stability of solitons in biomembranes and nerves
Lautrup, B. E., Appali, R., Jackson, Andrew D. & Heimburg, Thomas Rainer, 9 Jun 2011, In: The European Physical Journal E: Soft Matter and Biological Physics. 34, 57, p. 11057 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Genetic Regulatory Networks that count to 3
Lehmann, M. & Sneppen, Kim, 1 Jul 2013, In: Journal of Theoretical Biology. 329, p. 15-19 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A quantitative analysis of indicators of scientific performance
Lehmann, S., Jackson, Andrew D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Chunyun versus lockdown
Lehmann, S., 2022, In: National Science Review. 9, 1, 2 p., nwab178.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Comment on "Citation Statistics" by joint committee on quantitative assessment of research
Lehmann, S., Lautrup, B. E. & Jackson, Andrew D., 2009, In: Statistical Science. 24, 1, p. 17-20 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Diffusion inside living human cells
Leijnse, Natascha, Jeon, J. -., Loft, Steffen, Metzler, R. & Oddershede, L. B., 1 Apr 2012, In: European Physical Journal. Special Topics. 204, 1, p. 75-84 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical investigation of intra- and extra-cellular dynamics
Leijnse, Natascha, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 132 p.
Research output: Book/Report › Ph.D. thesis
Published
Dynamic buckling of actin within filopodia
Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 21 Oct 2015, In: Communicative & Integrative Biology. 8, 2, p. e1022010
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Helical buckling of actin inside filopodia generates traction
Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 2015, In: Proceedings of the National Academy of Sciences USA (PNAS). 112, 1, p. 136-141
Research output: Contribution to journal › Journal article › Research › peer-review
Published
An updated look at actin dynamics in filopodia
Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 1 Feb 2015, In: Cytoskeleton. 72, 2, p. 71-79
Research output: Contribution to journal › Review › Research › peer-review
Published
Filopodia rotate and coil by actively generating twist in their actin shaft
Leijnse, Natascha, Farhangibarooji, Younes, Arastoo, M. R., Sonder, S. L., Verhagen, B., Wullkopf, L., Erler, Janine, Semsey, S., Nylandsted, J., Oddershede, L. B., Doostmohammadi, Amin & Bendix, Poul Martin, 28 Mar 2022, In: Nature Communications. 13, 1, 16 p., 1636.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Helical Buckling in Filopodia
Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 27 Jan 2015, In: Biophysical Journal. 108, 2,Suppl 1, p. 139a-139a
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Response varibility in balanced cortical networks
Lerchner..[et al.], A., Ursta, C. & Hertz, John, 2006, In: Neural Computation. 18, 3, p. 634-659
Research output: Contribution to journal › Journal article › Research › peer-review
Published
IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress
Lerner, A. G., Upton, J., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, Ala, 8 Aug 2012, In: Cell Metabolism. 16, 2, p. 250-264 14 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Concomitance in single bubble sonoluminescence of period doubling in emission and shape distortion
Levinsen, Mogens, 10 Sep 2013, In: Ultrasonics. 54, 2, p. 637-643
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Saturation of Shape Instabilities in Single Bubble Sonoluminescence Saturation
Levinsen, Mogens, 29 Jul 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 90, 1, 013026.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Data collapse of the spectra of water-based stable single-bubble sonoluminescence
Levinsen, Mogens, 5 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 3, p. 036323 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Segregation in water-based stable single-bubble sonoluminescence
Levinsen, Mogens, 13 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, Part 2, p. 016309 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Role of HU in regulation of gal promoters: chapter 17 in Bacterial chromatin p.395-417, eds: C. Dorman and R.Dame
Lewis...[et al.], D. E. A., Lee, S. J. & Semsey, S., 1 Dec 2010, Tyskland: Springer Science+Business Media. 22 p.
Research output: Book/Report › Book › peer-review
Published
Metastable phase characterization in ion implanted and rapidly solidified aluminium-based alloys
Li, Q., Johnson, Erik, Johansen, A., Yu, L. D., Steenstrup, S., Sarholt-Kristensen, L. & Progrebnyakov, A., 1991, In: Materials Science & Engineering: A. A 134, p. 1170-74
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Switching between oscillations and homeostasis in competing negative and positive feedback motifs
Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa
Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-similar distributions of fluid velocity and stress heterogeneity in a dissolving porous limestone
Linga, G., Mathiesen, Joachim & Renard, F., Mar 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 3, p. 1726-1743
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Controlling wetting with electrolytic solutions: Phase-field simulations of a droplet-conductor system
Linga, G., Bolet, A. & Mathiesen, Joachim, 5 Jul 2018, In: Physical Review E. 98, 1, 11 p., 013101.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transient electrohydrodynamic flow with concentration-dependent fluid properties: Modelling and energy-stable numerical schemes
Linga, G., Bolet, A. & Mathiesen, Joachim, 1 Jul 2020, In: Journal of Computational Physics. 412, 34 p., 109430.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A two-fluid model for vertical flow applied to CO₂ injection wells
Linga, G. & Lund, H., 1 Aug 2016, In: International Journal of Greenhouse Gas Control. 51, p. 71-80 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bernaise: A Flexible Framework for Simulating Two-Phase Electrohydrodynamic Flows in Complex Domains
Linga, G., Bolet, A. & Mathiesen, Joachim, 4 Mar 2019, In: Frontiers in Physics. 7, 21.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fluid Flows with Complex Interfaces: Modelling and Simulation from Pore to Pipe
Linga, G., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Onset of turbulence in channel flows with scale-invariant roughness
Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images
Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, Amin & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Diffusion of finite-sized hard-core ineracting particles in a one-dimensional box: tagged particle dynamics
Lizana, G. L. & Ambjörnsson, T., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, p. 051103 16 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Time walkers and spatial dynamics of ageing information
Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds
Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Foundation of fractional Langevin equation: Harmonization of a many-body problem
Lizana, G. L., Ambjørnsson, T., Taloni, A., Barkai, E. & Lomholt, M. A., 14 May 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 5, p. 051118 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dissimilar bouncy walkers
Lomholt, M. A. & Lizana, G. L., 28 Jan 2011, In: Journal of Chemical Physics. 134, 8, p. 045101
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Publisher's note: “Dissimilar bouncy walkers” [J. Chem. Phys. 134, 045101 (2011)]
Lomholt, M. A., Lizana, G. L. & Ambjørnsson, T., 28 Feb 2011, In: Journal of Chemical Physics. 134, 8, p. 088902 1 p.
Research output: Contribution to journal › Comment/debate › Research › peer-review
Published
Deep neural networks identify signaling mechanisms of ErbB-family drug resistance from a continuous cell morphology space
Longden, J., Robin, X., Engel, M., Ferkinghoff-Borg, J., Kjaer, I., Horak, I. D., Pedersen, M. W. & Linding, R., 19 Jan 2021, In: Cell Reports. 34, 3, 13 p., 108657.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Exploring the complex dynamics of biological oscillators and their downstream effects
Lucchetti, Alessandra, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 133 p.
Research output: Book/Report › Ph.D. thesis
Published
Emergence of chimera states in a neuronal model of delayed oscillators
Lucchetti, Alessandra, Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 9 Jul 2021, In: Physical Review Research. 3, 3, 8 p., 033041.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effects of City-Size Heterogeneity on Epidemic Spreading in a Metapopulation: A Reaction-Diffusion Approach
Lund, H., Lizana, G. L. & Simonsen, I., 1 Apr 2013, In: Journal of Statistical Physics. 151, 2, p. 367-382
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A neutralizing monoclonal antibody for hospitalized patients with Covid-19
ACTIV-3/TICO LY-CoV555 Study Group, A. L. S. G., 11 Mar 2021, In: New England Journal of Medicine. 384, 10, p. 905-914 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gender bias in Nobel prizes
Lunnemann, P., Jensen, Mogens Høgh & Jauffred, Liselotte, 7 May 2019, In: Humanities and social sciences communications. 5, 4 p., 46.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Exploring the Link between Nucleosome Occupancy and DNA Methylation
Lövkvist, Cecilia, Sneppen, Kim & Härter, Jan Olaf Mirko, 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modeling spatiotemporal dynamics of DNA methylation
Lövkvist, Cecilia, 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
DNA methylation in human epigenomes depends on local topology of CpG sites
Lövkvist, Cecilia, Dodd, I. B., Sneppen, Kim & Härter, Jan Olaf Mirko, 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5123-5132
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Heat Generation by Irradiated Complex Composite Nanostructures
Ma, H., Tian, P., Pello, J., Bendix, Poul Martin & Oddershede, L. B., 6 Jan 2014, In: Nano Letters. 14, 2, p. 612-619
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Measurements of extreme orientation-dependent temperature increase around an irradiated gold nanorod: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA)
Ma, H., Bendix, Poul Martin & Oddershede, L. B., 10 Oct 2012, In: Proceedings of SPIE. 8458, p. 84581R
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Thermo-plasmonics of Irradiated Metallic Nanostructures
Ma, H., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 123 p.
Research output: Book/Report › Ph.D. thesis
Published
Large-Scale Orientation Dependent Heating from a Single Irradiated Gold Nanorod
Ma, H., Bendix, Poul Martin & Oddershede, L. B., 2012, In: Nano Letters. 12, 8, p. 3954-3960 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Defining Network Topologies that Can Achieve Biochemical Adaptation
Ma, W., Trusina, Ala, El-Samad, H., Lim, W. A. & Tang, C., 21 Aug 2009, In: Cell. 138, 4, p. 760-773
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Efficacy of Lower-Body Shielding in Computed Tomography Fluoroscopy-Guided Interventions
Mahnken, A. H., Sedlmair, M., Ritter, C., Banckwitz, R. & Flohr, T., 1 Dec 2012, In: Cardiovascular and Interventional Radiology. 35, 6, p. 1475-1479 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Analyzing powers of inelastic dp scattering in the energy region of Delta and Roper resonances excitation
Malinina, LV., Alkhazov, GD., Augustyniak, W., Boivin, M., Boyard, JL., Dahl, R., Drews, M., Ellegaard, C., Fahri, L., Gaarde, C., Hennino, T., Jourdain, JC., Kagarlis, M., Kravtsov, AV., Kunne, R., Larsen, JS., Morsch, P., Mylnikov, VA., Orischin, EA., Perdrisat, CF. & 15 others, Piskunov, N., Prokofiev, A., Punjabi, V., Radvanyi, P., Ramstein, B., Razmyslovich, B., Roy-Stephan, M., Sitnik, I., Skousen, M., Strokovsky, E., Tkach, I., Tomasi-Gustafsson, E., Volkov, S., Zhdanov, A. & Zupranski, P., 1 Dec 2001, In: Physical Review C (Nuclear Physics). 64, 6, 064001.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Work statistics at first-passage times
Mamede, I. N., Singh, Prashant, Pal, A., Fiore, C. E. & Proesmans, Karel Josef A, 19 Mar 2024, In: New Journal of Physics. 26, 3, 20 p., 033034.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Thermodynamics of interacting systems: The role of the topology and collective effects
Mamede, I. N., Proesmans, Karel Josef A & Fiore, C. E., 22 Dec 2023, In: Physical Review Research. 5, 4, 12 p., 043278.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The impact of involved node, involved field and mantle field radiotherapy on estimated radiation doses and risk of late effects for pediatric patients with Hodgkin lymphoma
Maraldo, M. V., Jorgensen, M., Brodin, N. P., Aznar, M. C., Vogelius, Ivan R. , Petersen, P. M., Berthelsen, A. K., Christensen, C. B., Hjalgrim, L. L. & Specht, Lena, 1 Apr 2014, In: Pediatric Blood & Cancer. 61, 4, p. 717-722 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Estimated risk of cardiovascular disease and secondary cancers with modern highly conformal radiotherapy for early-stage mediastinal Hodgkin lymphoma
Maraldo, M. V., Brodin, N. P., Aznar, M. C., Vogelius, I. R., Munck af Rosenschöld, P. M., Petersen, P. M. & Specht, Lena, 1 Aug 2013, In: Annals of Oncology. 24, 8, p. 2113-2118
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Doses to Carotid Arteries After Modern Radiation Therapy for Hodgkin Lymphoma: Is Stroke Still a Late Effect of Treatment?
Maraldo, M. V., Brodin, N. P., Aznar, M. C., Petersen, P. M., Munck af Rosenschöld, P. M. & Specht, Lena, 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. 297-303
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population dynamics of phage-bacteria ecosystems under challenging conditions
Marantos, Anastasios, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 131 p.
Research output: Book/Report › Ph.D. thesis
Published
From kill the winner to eliminate the winner in open phage-bacteria systems
Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Toward Larger DNA Origami
Marchi, A. N., Saaem, I., Vogen, B. N., Brown, Stanley & LaBean, T. H., 2014, In: Nano Letters. 14, 10, p. 5740-5747 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Gliomas induce and exploit microglial MT1-MMP expression for tumor expansion
Markovic, D. S., Vinnakota, K., Chirasani, S., Synowitz, M., Raguet, H., Stock, K., Sliwa, M., Lehmann, S., Kälin, R., van Rooijen, N., Holmbeck, Kenn, Heppner, F. L., Kiwit, J., Matyash, V., Lehnardt, S., Kaminska, B., Glass, R. & Kettenmann, H., 28 Jul 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 30, p. 12530-5 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Detecting limit cycles in stochastic time series
Martiny, E. S., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 17 Feb 2022, In: Physica A: Statistical Mechanics and its Applications. 605, 10 p., 127917.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Models of low data stochastic time series in Cell dynamics and Covid-19
Martiny, E. S., 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 74 p.
Research output: Book/Report › Ph.D. thesis
Published
Circuit architecture explains functional similarity of bacterial heat shock responses
Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spreading out of perturbations in reversible reaction networks
Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control
Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Severe population collapses and species extinctions in multihost epidemic dynamics
Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Diversity Waves in Collapse-Driven Population Dynamics
Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Well-temperate phage: optimal bet-hedging against local environmental collapses
Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Elasticity with arbitrarily shaped inhomogeneity
Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tip Splittings and Phase Transitions in the Dielectric Breakdown Model: Mapping to the Diffusion-Limited Aggregation Model
Mathiesen, Joachim & Jensen, Mogens Høgh, 1 Jan 2002, In: Physical Review Letters. 88, 23, 1 p., 235505.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Unstructured Lattice Boltzmann methods for efficient simulation of flow in complex porous media: EGU General Assembly 2015
Mathiesen, Joachim, Misztal, M. K., Matin, R. & Hernandez, A., 1 Jan 2015, In: Geophysical Research Abstracts. 17, 5669.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity
Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dimensions, maximal growth sites, and optimization in the dielectric breakdown model
Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamics of crystal formation in the Greenland NorthGRIP ice core
Mathiesen, Joachim, Ferkinghoff-Borg, J., Jensen, Mogens Høgh, Levinsen, Mogens, Olesen, Poul, Dahl-Jensen, Dorthe & Svensson, Anders, 2004, In: Journal of Glaciology. 50, 170, p. 325-328 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic Fluid Connectivity Controls Solute Dispersion in Multiphase Porous Media Flow
Mathiesen, Joachim, Linga, G., Misztal, M., Renard, F. & Le Borgne, T., 28 Aug 2023, In: Geophysical Research Letters. 50, 16, 11 p., e2023GL105233.
Research output: Contribution to journal › Letter › Research › peer-review
Published
Excitable human dynamics driven by extrinsic events in massive communities
Mathiesen, Joachim, Angheluta, L., Ahlgren, P. T. H. & Jensen, Mogens Høgh, 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17259-17262
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Organizational structure and communication networks in a university environment
Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modular networks of word correlations on Twitter
Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Statistics of co-occurring keywords in confined text messages on Twitter
Mathiesen, Joachim, Angheluta, L. & Jensen, Mogens Høgh, 1 Sep 2014, In: European Physical Journal. Special Topics. 223, 9, p. 1849-1858 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
"Want to understand the stock market? Just log in to Twitter"
Mathiesen, Joachim & Angheluta, L., 24 Oct 2013, In: The Conversation.
Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication
Published
From Pore Scale to Turbulent Flow with the Unstructured Lattice Boltzmann Method
Matin, R., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Evaluation of the finite element lattice Boltzmann method for binary fluid flows
Matin, R., Misztal, M. K., Hernandez-Garcia, A. & Mathiesen, Joachim, 15 Jul 2017, In: Computers and Mathematics with Applications. 74, 2, p. 281-291
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A simulation-based study of micron scale, binary flows in porous rocks
Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, 6 Jun 2016, CMG 2016: 31st IUGG Conference on Mathematical Geophysics, Paris. Geo-Physics, from Mathematics to Experiments. Paris, France
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research
Published
Finite-element lattice Boltzmann simulations of contact line dynamics
Matin, R., Krzysztof Misztal, M., Hernández-garcía, A. & Mathiesen, Joachim, 19 Jan 2018, In: Physical Review E. 97, 1, 013307.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Simulating Anomalous Dispersion and Multiphase Segregation in Porous Media with the Lattice Boltzmann Method
Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.
Research output: Contribution to conference › Conference abstract for conference › Research
Published
Coherent structures in turbulent square duct flow
Matin, R., Hellström, L. H. O., Hernandez, A., Mathiesen, Joachim & Smits, A. J., 2018, In: International Journal of Heat and Fluid Flow. 74, p. 144-153
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Avoidance of error catastrophe via proofreading innate to template-directed polymerization
Matsubara, Y. J., Takeuchi, N. & Kaneko, Kunihiko, 13 Mar 2023, In: Physical Review Research. 5, 13 p., 013170.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Generic optimization by fast chaotic exploration and slow feedback fixation
Matsushita, Y. & Kaneko, Kunihiko, 10 Apr 2023, In: Physical Review Research. 5, 7 p., 023017.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Deformation Precursors to Catastrophic Failure in Rocks
McBeck, J. A., Aiken, J. M., Mathiesen, Joachim, Ben-Zion, Y. & Renard, F., 28 Dec 2020, In: Geophysical Research Letters. 47, 24, 9 p., e2020GL090255.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bacteria solve the problem of crowding by moving slowly
Meacock, O. J., Doostmohammadi, Amin, Foster, K. R., Yeomans, J. M. & Durham, W. M., 23 Nov 2020, In: Nature Physics. 23 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nested feedback loops in gene regulation
Mengel, A. B., Krishna, S., Jensen, Mogens Høgh & Trusina, Ala, 1 Jan 2012, In: Physica A: Statistical Mechanics and its Applications. 391, 1-2, p. 100-106
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effects of Growth and Mutation on Pattern Formation in Tissues
Mengel, A. B., Krishna, S., Chakraborty, S., Pigolotti, S., Sekara, V., Semsey, S. & Jensen, Mogens Høgh, 9 Nov 2012, In: P L o S One. 7, 11, p. e48772
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans
Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.
Research output: Book/Report › Ph.D. thesis
Published
Modeling oscillatory control in NF-¿B, p53 and Wnt signaling
Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions
Merksamer, P., Trusina, Ala & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechanical Forcing of Convection by Cold Pools: Collisions and Energy Scaling
Meyer, B. & Härter, Jan Olaf Mirko, 26 Oct 2020, In: Journal of Advances in Modeling Earth Systems. 12, 11, 20 p., e2020MS002281.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The length distribution of frangible biofilaments
Michaels, T. C. T., Yde, Pernille, Willis, J. C. W., Jensen, Mogens Høgh, Otzen, D., Dobson, C. M., Buell, A. K. & Knowles, T. P. J., 28 Oct 2015, In: Journal of Chemical Physics. 143, 16
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Theory for the stability and regulation of epigenetic landscapes
Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Machine-learning vs. logistic regression for preoperative prediction of medical morbidity after fast-track hip and knee arthroplasty—a comparative study
Michelsen, C., Jørgensen, C. C., Heltberg, Mathias Spliid, Jensen, Mogens Høgh, Lucchetti, Alessandra, Petersen, P. B., Petersen, T., Kehlet, Henrik, Madsen, F., Hansen, T. B., Gromov, Kirill, Jakobsen, T., Varnum, C., Overgaard, S., Andersen, Mikkel Rathsach & Hansen, L., 29 Nov 2023, In: BMC Anesthesiology. 23, 1, 12 p., 391.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-organization of structures and networks from merging and small-scale fluctuations
Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732
Research output: Contribution to journal › Journal article › Research › peer-review
E-pub ahead of print
Nature Exposure is Associated With Reduced Smartphone Use
Minor, Kelton Ray, Glavind, Kristoffer Lind, Schwartz, A. J., Danforth, C. M., Lehmann, S. & Bjerre-Nielsen, Andreas, 27 Apr 2023, (E-pub ahead of print) In: Environment and Behavior.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Interference of mesoscales in the critical behaviour of polystyrene-cyclohexane: heat capacity and mass density
Mirzaev, S. Z., Heimburg, Thomas Rainer & Kaatze, U., 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, p. 061502 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Critical behavior of polystyrene-cyclohexane
Mirzaev, S., Kaatze, U. & Heimburg, Thomas Rainer, 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, part 1, p. 061502 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Multiphase flow of immiscible fluids on unstructured moving meshes
Misztal, M. K., Erleben, Kenny, Bargteil, A., Fursund, J., Christensen, B. B., Bærentzen, J. A. & Bridson, R., 2014, In: I E E E Transactions on Visualization and Computer Graphics. 20, 1, p. 4-16 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Simulating anomalous dispersion in porous media using the unstructured lattice Boltzmann method
Misztal, M. K., Hernandez Garcia, A., Matin, R., Müter, D., Jha, D., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Frontiers in Physics. 3, 9 p., 50.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Permeability and Fluid Flow: Presentation at the Phoenix Consortium’s Symposium on Imaging Porous Media and Fluid Flow,
Misztal, M. K. & Mathiesen, Joachim, 10 Jan 2015, Copenhagen, Denmark
Research output: Other contribution › Research
Published
Two-phase Flow Simulations Using the Lattice Boltzmann Method on Unstructured Grids.
Misztal, M. K., Matin, R., Hernandez, A. & Mathiesen, Joachim, 1 Jul 2015, 224th International Conference on Discrete Simulation of Fluid Dynamics, 13th-17th July. The Royal Society of Edinburgh ed. Edinburgh
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research
Published
Detailed analysis of the lattice Boltzmann method on unstructured grids
Misztal, M. K., Hernandez Garcia, A., Matin, R., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Journal of Computational Physics. 297, p. 316-339
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Evaluation of the Unstructured Lattice Boltzmann Method in Porous Flow Simulations
Misztal, M. K., Matin, R., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.
Research output: Contribution to conference › Conference abstract for conference › Research
Published
Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress
Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Hard-sphere limit of soft-sphere model for granular materials: Stiffness dependence of steady granular flow
Mitarai, Namiko & Nakanishi, H., 19 Feb 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 67, 2, 021301.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Linear stability analysis of rapid granular flow down a slope and density wave formation
Mitarai, Namiko & Nakanishi, H., 25 May 2004, In: Journal of Fluid Mechanics. 507, p. 309-334
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Collisional granular flow as a micropolar fluid
Mitarai, Namiko, Hayakawa, H. & Nakanishi, H., 29 Apr 2002, In: Physical Review Letters. 88, 17, 174301.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Entrainment of noise-induced and limit cycle oscillators under weak noise
Mitarai, Namiko, Alon, U. & Jensen, Mogens Høgh, 1 Jun 2013, In: Chaos. 23, 2, 023125.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Wet granular materials
Mitarai, Namiko & Nori, F., 30 Jun 2006, In: Advances in Physics. 55, 1-2, p. 1-45 45 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Instability of dilute granular flows on rough slope
Mitarai, Namiko & Nakanishi, H., 1 Oct 2001, In: Journal of the Physical Society of Japan. 70, 10, p. 2809-2812
Research output: Contribution to journal › Journal article › Research › peer-review
Published
How pirate phage interferes with helper phage: Comparison of the two distinct strategies
Mitarai, Namiko, 7 Feb 2020, In: Journal of Theoretical Biology. 486, 9 p., 110096.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Control of ribosome traffic by position-dependent choice of synonymous codons
Mitarai, Namiko & Pedersen, Steen, 8 Oct 2013, In: Physical Biology. 10, 5, 056011.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three is much more than two in coarsening dynamics of cyclic competitions
Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Emergence of diversity in a model ecosystem
Mitarai, Namiko, Mathiesen, Joachim & Sneppen, Kim, 30 Jul 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 86, 1, p. 011929 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic features of gene expression control by small regulatory RNAs
Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatiotemporal structure of traffic flow in a system with an open boundary
Mitarai, Namiko & Nakanishi, H., 21 Aug 2000, In: Physical Review Letters. 85, 8, p. 1766-1769
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sustainable diversity of phage-bacteria systems
Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.
Research output: Contribution to journal › Review › Research › peer-review
Published
Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli
Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Efficient degradation and expression prioritization with small RANs
Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Convective instability and structure formation in traffic flow
Mitarai, Namiko & Nakanishi, H., 2 Nov 2000, In: Journal of the Physical Society of Japan. 69, 11, p. 3752-3761
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Speciation, diversification, and coexistence of sessile species that compete for space
Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability analysis of collisional granular flow on a slope
Mitarai, Namiko & Nakanishi, H., 30 Sep 2003, In: International Journal of Modern Physics B. 17, 22-24 II, p. 4290-4294 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization
Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity
Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow
Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Stability analysis of optimal velocity model for traffic and granular flow under open boundary condition
Mitarai, Namiko & Nakanishi, H., 1 Aug 1999, In: Journal of the Physical Society of Japan. 68, 8, p. 2475-2478
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies
Mitarai, Namiko, Jensen, Mogens Høgh & Semsey, S., 7 Apr 2015, In: mBio (Print). 6, 2, e00059-15 .
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Granular flow: dry and wet
Mitarai, Namiko & Nakanishi, H., 2012, In: European Physical Journal. Special Topics. 204, 1, p. 5-17 13 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Simple Interaction Model for Particlly Wet Granular Materials
Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Simple model for wet granular materials with liquid cluster
Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Full simulation of chiral random matrix theory at nonzero chemical potential by complex Langevin
Mollgaard, A. & Splittorff, Kim, 26 Feb 2015, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). 91, 3, 036007.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Correlations between human mobility and social interaction reveal general activity patterns
Mollgaard, A., Lehmann, S. & Mathiesen, Joachim, 13 Dec 2017, In: PLOS ONE. 12, 12, e018973.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Dynamics of Initiative in Communication Networks
Mollgaard, A. & Mathiesen, Joachim, 28 Apr 2016, In: PLOS ONE. 11, 4, e0154442.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Contact activity and dynamics of the social core
Mones, E., Stopczynski, A. & Lehmann, S., 31 May 2017, In: EPJ Data Science. 6
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optimizing targeted vaccination across cyber-physical networks: an empirically based mathematical simulation study
Mones, E., Stopczynski, A., Pentland, A. '., Hupert, N. & Lehmann, S., 1 Jan 2018, In: Journal of the Royal Society. Interface. 15, 138, 9 p., 20170783.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechanics of Live Cell Elimination
Monfared, S., Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 18 Aug 2021, In: bioRxiv. p. 1-7 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechanical basis and topological routes to cell elimination
Monfared, S., Ravichandran, G., Andrade, J. & Doostmohammadi, Amin, 18 Apr 2023, In: eLife. 12, 20 p., 82435.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Short-range correlation of stress chains near solid-to-liquid transition in active monolayers
Khosh Sokhan Monfared, Siavash, Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 8 May 2024, In: Journal of the Royal Society Interface. 21, 214, 8 p., 20240022.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Disparate metabolic response to fructose feeding between different mouse strains
Montgomery, M. K., Fiveash, C. E., Braude, J. P., Osborne, Brenna, Brown, Stanley, Mitchell, T. W. & Turner, N., 22 Dec 2015, In: Scientific Reports. 5, 18474.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Investigating Plasma-Membrane Repair Employing Thermoplasmonics
Moreno Pescador, Guillermo Sergio, Aswad, D. S., Arastoo, Mohammadreza, Danielsen, Helena Maria Dávidsdóttir, Florentsen, C. D., Bahadori, Azra, Nylandsted, J., Oddershede, L. B. & Bendix, Poul Martin, 2021, In: Biophysical Journal. 120, 3, Supp. 1, p. 45a-45a 1 p., 221-Pos.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Membrane protein dynamics studied with optical and thermoplasmonic methods in complex and simple membranes
Moreno Pescador, Guillermo Sergio, 2019, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 163 p.
Research output: Book/Report › Ph.D. thesis
Published
Lateral Distribution and Mobility of Transmembrane Proteins in Plasma Membrane Vesicles
Moreno Pescador, Guillermo Sergio, Otsbye, H., Semsey, S., Veje, E. L., Daniels, R. & Bendix, Poul Martin, 18 Feb 2018, In: Biophysical Journal. 114, 3, Supp. 2976-pos, p. 600A-600A 1 p.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Thermoplasmonic Vesicle Fusion Reveals Membrane Phase Segregation of Influenza Spike Proteins
Moreno Pescador, Guillermo Sergio, Arastoo, Mohammadreza, Thusgaard Ruhoff, Victoria, Chiantia, S., Daniels, R. & Bendix, Poul Martin, 11 Apr 2023, In: Nano Letters. 23, 8, p. 3377-3384 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantification of protein dynamics in nanotubes pulled from transfected cell-derived vesicles
Moreno Pescador, Guillermo Sergio, Florentsen, C., Østbye, H., Sønder, S. L., Boye, T. L., Veje, E. L., Semsey, S., Nylandsted, J., Daniels, R. & Bendix, Poul Martin, 20 Jul 2019, In: European Biophysics Journal. 48, Suppl. 1, p. S159-S159
Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
Published
Curvature- and Phase-Induced Protein Sorting Quantified in Transfected Cell-Derived Giant Vesicles
Moreno Pescador, Guillermo Sergio, Florentsen, C. D., Østbye, H., Sønder, S. L., Boye, T. L., Veje, E. L., Sonne, A. K., Semsey, S., Nylandsted, J., Daniels, R. & Bendix, Poul Martin, Jun 2019, In: ACS Nano. 13, 6, p. 6689-6701
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effect of local thermoplasmonic heating on biological membranes
Moreno Pescador, Guillermo Sergio, Qoqaj, I., Thusgaard Ruhoff, Victoria, Iversen, J., Nylandsted, J. & Bendix, Poul Martin, 9 Sep 2019, In: Proceedings of S P I E - International Society for Optical Engineering. 11083, 19 p., 110830M.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Thermoplasmonic nano-rupture of cells reveals Annexin V function in plasma membrane repair
Moreno Pescador, Guillermo Sergio, Aswad, D. S., Florentsen, C. D., Bahadori, Azra, Arastoo, M. R., Danielsen, Helena Maria Dávidsdóttir, Heitmann, A. S. B., Boye, T. L., Nylandsted, J., Oddershede, L. B. & Bendix, Poul Martin, 2022, In: Nanoscale. 14, p. 7778–7787
Research output: Contribution to journal › Journal article › Research
Published
Probing the precipitation life cycle by iterative rain cell tracking
Moseley, C., Berg, P. & Härter, Jan Olaf Mirko, 27 Dec 2013, In: Journal of Geophysical Research: Atmospheres. 118, 24, p. 13361-13370
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Intensification of convective extremes driven by cloud–cloud interaction
Moseley, C., Hohenegger, C., Berg, P. & Härter, Jan Olaf Mirko, 29 Aug 2016, In: Nature Geoscience. 9, 10, p. 748-752
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A Statistical Model for Isolated Convective Precipitation Events
Moseley, C., Henneberg, O. & Härter, Jan Olaf Mirko, 29 Jan 2019, In: Journal of Advances in Modeling Earth Systems. 11, 1, p. 360-375
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium
Moses, M. E., Lund, P. M., Bohr, S. S., Iversen, J. F., Kæstel-Hansen, J., Kallenbach, A. S., Iversen, L., Christensen, S. M. & Hatzakis, Nikos, 2021, In: A C S Applied Materials and Interfaces. 13, 28, 9 p., 33704.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Effect of the Nonlinearity of the Response of Lipid Membranes to Voltage Perturbations on the Interpretation of Their Electrical Properties. A New Theoretical Description
Mosgaard, L. D., Zecchi, K. A., Heimburg, Thomas Rainer & Budvytyte, R., Dec 2015, In: Membranes. 5, 4, p. 495-512
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Low frequency sound propagation in lipid memembranes
Mosgaard, L. D., Heimburg, Thomas Rainer & Jackson, Andrew D., 2012, Advances in Planar Lipid Bilayers and Liposomes. Elsevier, Vol. 16. p. 51-74 24 p. (Advances in Planar Lipid Bilayers and Liposomes).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
The Electrical and Dynamical Properties of Biomembranes
Mosgaard, L. D., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 190 p.
Research output: Book/Report › Ph.D. thesis
Published
Fluctuations of systems in finite heat reservoirs with applications to phase transitions in lipid membranes
Mosgaard, L. D., Jackson, Andrew D. & Heimburg, Thomas Rainer, 25 Sep 2013, In: Journal of Chemical Physics. 139, 12, 125101.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lipid Ion Channels and the Role of Proteins
Mosgaard, L. D. & Heimburg, Thomas Rainer, 31 Jul 2013, In: Accounts of Chemical Research. 46, 12, p. 2966-2976
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechano-capacitive properties of polarized membranes
Mosgaard, L. D., Zecchi, K. A. & Heimburg, Thomas Rainer, 21 Aug 2015, In: Soft Matter. 11, 40, p. 7899-7910
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spontaneous Aggregation of Convective Storms
Muller, C., Yang, D., Craig, G., Cronin, T., Fildier, B., Härter, Jan Olaf Mirko, Hohenegger, C., Mapes, B., Randall, D., Shamekh, S. & Sherwood, S. C., 2021, In: Annual Review of Fluid Mechanics. 54, p. 133-157 25 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Modeling positioning uncertainties of prostate cancer external beam radiation therapy using pre-treatment data
Munck af Rosenschöld, P. M., Desai, N. B., Hun, J., Apte, A., Hunt, M., Kalikstein, A., Mechalakos, J., Happersett, L., Deasy, J. O. & Zelefsky, M. J., 1 Feb 2014, In: Radiotherapy & Oncology. 110, 2, p. 251-255
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Melting transitions in biomembranes
Muzic, T., Tounsi, F., Madsen, S. B., Pollakowski, D., Konrad, M. & Heimburg, Thomas Rainer, 26 Sep 2019, In: B B A - Biomembranes. 1861, 11, 11 p., 183026.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Reduction of Cheddar cheese ripening time through the addition of glucose
Møller, C. O. D. A., Czárán, T. L., Christensen, B. B., Siegumfeldt, Henrik & Rattray, F. P., 2016.
Research output: Contribution to conference › Poster › Research
Published
Quantification of droplet deformation by electromagnetic trapping
Møller, P. C. F. & Oddershede, L. B., 2009, In: EPL. 88, p. 48005 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Oxidative stress and inflammation generated DNA damage by exposure to air pollution particles
Møller, Peter, Danielsen, P. H., Karottki, D. G., Jantzen, K., Roursgaard, Martin, Klingberg, H., Jensen, Ditte Marie, Christophersen, D. V., Hemmingsen, J. G., Cao, Y. & Loft, Steffen, 2014, In: Mutation Research - Reviews. 762, p. 133-166 34 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Mathematical models of human behavior
Møllgaard, A. E., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Measure of node similarity in multilayer networks
Møllgaard, A. E., Zettler, Ingo, Dammeyer, Jesper, Jensen, Mogens Høgh, Lehmann, S. & Mathiesen, Joachim, 14 Jun 2016, In: PLOS ONE. 11, 6, 0157436.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Complex Langevin dynamics for chiral random matrix theory
Møllgaard, A. E. & Splittorff, Kim, 9 Dec 2013, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). 88, 11, 12 p., 116007.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Emergent user behavior on Twitter modelled by a stochastic differential equation
Møllgaard, A. E. & Mathiesen, Joachim, 2015, In: P L o S One. 10, 5, e0123876.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Phone-based metric as a predictor for basic personality traits
Mønsted, B., Mollgaard, A. & Mathiesen, Joachim, 1 Jun 2018, In: Journal of Research in Personality. 74, p. 16-22
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Experimental observation of shear thickening oscillation
Nagahiro, S., Nakanishi, H. & Mitarai, Namiko, 1 Oct 2013, In: EPL. 104, 2, 28002.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Heparin promotes fibrillation of most phenol-soluble modulin virulence peptides from Staphylococcus aureus
Najarzadeh, Z., Zaman, M., Sereikaité, Vita, Strømgaard, Kristian, Andreasen, M. & Otzen, D. E., 2021, In: Journal of Biological Chemistry. 297, 2, 14 p., 100953.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamical analysis on gene activity in the presence of repressors and an interfering promoter
Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fluid dynamics of dilatant fluid
Nakanishi, H., Nagahiro, S. & Mitarai, Namiko, 12 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, p. 011401 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Shear Thickening Oscillation in a Dilatant Fluid
Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Memory effects, arches and polar defect ordering at the cross-over from wet to dry active nematics
Nejad, M. R., Doostmohammadi, Amin & Yeomans, J. M., 7 Mar 2021, In: Soft Matter. 17, 9, p. 2500-2511 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Establishment of heterochromatin in domain-size-dependent bursts
Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin
Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Resonant energy transfer in Bose-Einstien condensates
Nicolin, A., Jensen, Mogens Høgh, Thomsen, Jan Westenkær & Carretero-Gonxález, R., 2008, In: Physica D : Non-linear Phenomena. 237, 19, p. 2476-2481
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mode locking of a driven Bose-Einstein condensate
Nicolin, A., Carretero-González, R. & Jensen, Mogens Høgh, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-organized quantization and oscillations on continuous fixed-energy sandpiles
Niehues, J., Jensen, Gorm Gruner & Härter, Jan Olaf Mirko, 31 Mar 2022, In: Physical Review E. 105, 3, 13 p., 034314.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Schelling model of cell segregation based only on local information
Nielsen, Alexander Valentin, Gade, A. L., Juul, J. & Strandkvist, C., 4 Nov 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 5, 052705.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Computational tools for identifying and relating cell-types in development and stem-cell engineering
Nielsen, Alexander Valentin, 2022, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 154 p.
Research output: Book/Report › Ph.D. thesis
Published
The counterintuitive implications of superspreading diseases
Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Substrate curvature governs texture orientation in thin films of smectic block copolymers
Nielsen, Bjarke Frost, Linga, G., Christensen, A. & Mathiesen, Joachim, 14 Apr 2020, In: Soft Matter. 16, 14, p. 3395-3406
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-organizing systems and disease modelling: From Molecules to Populations
Nielsen, Bjarke Frost, 2021, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 206 p.
Research output: Book/Report › Ph.D. thesis
Published
Differences in social activity increase efficiency of contact tracing
Nielsen, Bjarke Frost, Sneppen, Kim, Simonsen, L. & Mathiesen, Joachim, 2 Oct 2021, In: European Physical Journal B. 94, 10, 11 p., 209.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Model to Link Cell Shape and Polarity with Organogenesis
Nielsen, Bjarke Frost, Nissen, Silas Boye, Sneppen, Kim, Mathiesen, Joachim & Trusina, Ala, 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants
Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
COVID-19 superspreading suggests mitigation by social network modulation
Nielsen, Bjarke Frost, Simonsen, L. & Sneppen, Kim, 15 Mar 2021, In: Physical Review Letters. 126, 6 p., 118301.
Research output: Contribution to journal › Letter › Research › peer-review
Published
Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2
Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
MR-based CT metal artifact reduction for head-and-neck photon, electron, and proton radiotherapy
Nielsen, J. S., Van Leemput, K. & Edmund, J. M., Oct 2019, In: Medical Physics. 46, 10, p. 4314-4323
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Brownian Warps for Non-Rigid Registration
Nielsen, Mads, Johansen, P., Jackson, Andrew D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms
Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Wildtype and A30P mutant alpha-synuclein form different fibril structures
Nielsen, S. B., Macchi, F., Raccosta , S., Langkilde, Annette Eva, Giehm, L., Kyrsting, A. H., Svane, A. S. P., Manno, M., Christiansen, G., Nielsen, N. C., Oddershede, L. B., Vestergaard, Bente & Otzen, D., 2013, In: PLOS ONE. 8, 7, e67713.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Multiple Roles of Heparin in the Aggregation of p25 alpha
Nielsen, S. B., Yde, Pernille, Giehm, L., Sundbye, S., Christiansen, G., Mathiesen, Joachim, Jensen, Mogens Høgh, Jensen, P. H. & Otzen, D. E., 2012, In: Journal of Molecular Biology. 421, 4-5, Part 2, p. 601-615
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Head-to-Head Comparison of the Penetration Efficiency of Lipid-Based Nanoparticles into Tumor Spheroids
Niora, M., Pedersbaek, D., Munter, R., Weywadt, M. F. D. V., Farhangibarooji, Younes, Andresen, T. L., Simonsen, J. B. & Jauffred, Liselotte, 25 Aug 2020, In: ACS Omega. 5, 33, p. 21162-21171 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Publication bias and the canonization of false facts
Nissen, Silas Boye, Magidson, T., Gross, K. & Bergstrom, C. T., 20 Dec 2016, In: eLife. 5, p. 1-19 19 p., e21451.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Theoretical tool bridging cell polarities with development of robust morphologies
Nissen, Silas Boye, Rønhild, S., Trusina, Ala & Sneppen, Kim, 27 Nov 2018, In: eLife. 7, 25 p., e38407.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Four simple rules that are sufficient to generate the mammalian blastocyst
Nissen, Silas Boye, Perera Pérez, Marta, Martin Gonzalez, Javier, Morgani, S. M. C., Jensen, Mogens Høgh, Sneppen, Kim, Brickman, Joshua Mark & Trusina, Ala, 12 Jul 2017, In: PLOS Biology. 15, 7, p. 1-30 e2000737.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Point Particles to Capture Polarized Embryonic Cells & Cold Pools in the Atmosphere
Nissen, Silas Boye, 2020, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 319 p.
Research output: Book/Report › Ph.D. thesis
Published
Circling in on Convective Self-Aggregation
Nissen, Silas Boye & Härter, Jan Olaf Mirko, 24 Sep 2021, In: Journal of Geophysical Research: Atmospheres. 126, 20, 12 p., e2021JD035331.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Missing levels in acoustic resonators
Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, Clive Sigurd, 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations
Nonn, A., Kiss, B., Pezeshkian, Weria, Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tethered particle analysis of supercoiled circular DNA using peptide nucleic acid handles
Norregaard, K., Andersson, M., Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., Sep 2014, In: Nature Protocols (Print). 9, 9, p. 2206-23 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch
Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17386-91 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Manipulation and Motion of Organelles and Single Molecules in Living Cells
Norregaard, K., Metzler, R., Ritter, C. M., Berg-Sørensen, K. & Oddershede, L. B., 3 Feb 2017, In: Chemical Reviews. 117, 5, p. 4342-4375
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effect of supercoiling on the λ switch
Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 1 Jan 2014, In: Bacteriophage. 4, 2, p. 1-5 5 p., e27517.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
¹⁸F-FDG PET/CT-based early treatment response evaluation of nanoparticle-assisted photothermal cancer therapy
Norregaard, K., Jørgensen, Jesper Tranekjær, Simon, M., Melander, F., Kristensen, L. K., Bendix, Poul Martin, Andresen, T. L., Oddershede, L. B. & Kjær, Andreas, 24 May 2017, In: PLOS ONE. 12, 5, e0177997.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Single-cell tracking reveals super-spreading brain cancer cells with high persistence
Nousi, A., Sogaard, M. T., Audion, M. & Jauffred, Liselotte, 1 Dec 2021, In: Biochemistry and Biophysics Reports. 28, 12 p., 101120.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spatiotemporal model of cellular mechanotransduction via Rho and YAP
Novev, Yavor Kirilov, Heltberg, Mathias Spliid, Jensen, Mogens Høgh & Doostmohammadi, Amin, 17 Aug 2021, In: Integrative Biology. 13, 8, p. 197-209 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mesoscale modelling of polymer aggregate digestion
Novev, Yavor Kirilov, Doostmohammadi, Amin, Zöttl, A. & Yeomans, J. M., 1 Nov 2020, In: Current Research in Food Science. 3, p. 122-133 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Physics Based Investigations of DNA Supercoiling and of Plasmonic Nanoparticles for Photothermal Cancer Therapy
Nørregaard, K., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 151 p.
Research output: Book/Report › Ph.D. thesis
Published
Using Optically Manipulated Metallic Nanoparticles for Cancer Treatment
Nørregaard, K., Jørgensen, Jesper Tranekjær, Kjær, Andreas, Samadi, A., Bendix, Poul Martin & Oddershede, L. B., 2 Apr 2017, Optical Trapping Applications 2017: Optical Manipulation Applications III (OtTu2E). San Diego, California, USA: Optical Society of America, OtTuE.4
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Optical manipulation of single molecules in the living cell
Nørregaard, K., Jauffred, Liselotte, Berg-Sørensen, K. & Oddershede, L. B., 10 Mar 2014, In: Physical Chemistry Chemical Physics. 16, 25, p. 12614-12624
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Comparison of the Photothermal Efficiency of Different Types of Plasmonic Nanoparticles in vitro and in vivo
Nørregaard, K., Jørgensen, Jesper Tranekjær, Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 171a
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nucleation and spreading of a heterochromatic domain in fission yeast
Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Autotoxin-mediated latecomer killing in yeast communities
Oda, A. H., Tamura, M., Kaneko, Kunihiko, Ohta, K. & Hatakeyama, T. S., 7 Nov 2022, In: PLOS Biology. 20, 11, 23 p., 3001844.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Motion of a Single Molecule, the Lambda-Receptor, in the Bacterial Outer Membrane
Oddershede, L., Dreyer, J. K., Grego, S., Brown, Stanley & Berg-Sørensen, K., 2002, In: Biophysical Journal. 83, 6, p. 3152-61 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Force probing of individual molecules inside the living cell is now a reality
Oddershede, L. B., 17 Oct 2012, In: Nature Chemical Biology. 8, 11, p. 879-886 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Small-scale nonequilibrium systems
Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Foton - et fysikspil
Oddershede, L. B., Jacobsen, R. H., Lefmann, Kim & Thoft, N. B., 1 Mar 1994, In: Kvant. 4, p. 9-18
Research output: Contribution to journal › Journal article › Communication
Published
Institute Colloquium
Oddershede, L. B., 16 Feb 2010, USA
Research output: Other contribution › Research
Published
Institute Colloquium
Oddershede, L. B., 15 Jun 2010, Dep. of Chemistry
Research output: Other contribution › Research
Published
Photon 10
Oddershede, L. B., 25 Aug 2010, Southampton University, GB. : American Institute of Physics.
Research output: Other contribution › Research
Published
Complex and non-equlibrium physics: at Nordic workshop on statistical physics , biology
Oddershede, L. B., 18 Mar 2010, Stockholm, Sverige
Research output: Other contribution › Research
Published
Institute Colloquium
Oddershede, L. B., 15 Jan 2010, England
Research output: Other contribution › Research
Published
Optical manipulation of hot nanoparticles can mediate selected cell fusion
Oddershede, L. B., Bahadori, Azra & Bendix, Poul Martin, 18 Apr 2017, In: Proceedings of SPIE. 10252, 1025207.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical tweezers techniques, chapter in Hanndbook of Molecular Biophysics: Methods and Applications
Oddershede, L. B., 2009, Handbook of Molecular Biophysics. G. Bohr, H. (ed.). Wiley-VCH, p. 195-214 19 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Squishy physics
Oddershede, L. B., 18 Feb 2010, USA
Research output: Other contribution › Research
Published
Optical tweezers techniques
Oddershede, L. B., 2008, Handbook of Molecular Biophysics: Methods and Applications. Bohr, H. G. (ed.). 1. ed. ed. Berlin: Wiley-VCH, Vol. Chapter 6. p. Chapter 6
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Published
Genome maintanace and consequences
Oddershede, L. B., 5 Jun 2010, Dragør, DK.
Research output: Other contribution › Research
Published
N7 nanooptics
Oddershede, L. B., 5 Sep 2010, Fuglesøcentert, Ebeltoft, DK.
Research output: Other contribution › Research
Published
Jamming Transition in Kinetically Constrained Models with Reflection Symmetry
Ohta, H. & sasa, S., 1 Jun 2014, In: Journal of Statistical Physics. 155, 5, p. 827-842
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network
Okubo, K., Kaneko, Kunihiko & Nelson, K. E. (ed.), 29 Jul 2022, In: PNAS Nexus. 1, 3, 12 p., 097.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Comprehensive analysis of gene regulatory dynamics, fitness landscape, and population evolution during sexual reproduction
Okubo, K. & Kaneko, Kunihiko, 14 Oct 2022, In: New Journal of Physics. 24, 10, 13 p., 103017.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?
Olariu, V., Nilsson, J., Jonsson, H. & Peterson, C., 6 Apr 2017, In: PLOS ONE. 12, 4, e0175251.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nanog, Oct4 and Tet1 interplay in establishing pluripotency
Olariu, V., Lövkvist, Cecilia & Sneppen, Kim, 5 May 2016, In: Scientific Reports. 6, 25438.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A deterministic method for estimating free energy genetic network landscapes with applications to cell commitment and reprogramming paths
Olariu, V., Manesso, E. & Peterson, C., 7 Jun 2017, In: Royal Society Open Science. 4, 6, 160765.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy
Oliynyk, V., Jäger, M., Heimburg, Thomas Rainer, Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A high-pressure study of thallium
Olsen, J. S., Gerward, L., Steenstrup, S. & Johnson, E., 1994, In: Journal of Applied Crystallography. 27, p. 1002-1005
Research output: Contribution to journal › Journal article › Research › peer-review
Published
High Pressure Studies up to 50 GPa of Bi-based High-Tc Superconductors
Olsen, J. S., Steenstrup, S., Gerward, L. & Sundquist, B., 1991, In: Physica Scripta. 44, p. 211-3
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Revealing Hidden Dynamics within Living Soft Matter
Ott, D., Bendix, Poul Martin & Oddershede, L. B., 11 Oct 2013, In: A C S Nano. 7, 10, p. 8333-8339
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A detection system for an optical manipulation system for manipulating micro-particls or nano-particles of a sample by means of at least two optical traps
Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 1 Dec 2014, Patent No. 70097, 1 Dec 2014
Research output: Patent
Published
Photodiode Based Detection for Multiple Trap Optical Tweezers
Ott, D., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 164 p.
Research output: Book/Report › Ph.D. thesis
Published
Simultaneous three-dimensional tracking of individual signals from multi-trap optical tweezers using fast and accurate photodiode detection
Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 22 Sep 2014, In: Optics Express. 22, 19, p. 23661-23672
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Enabling accurate photodiode detection of multiple optical traps by spatial filtering: Optical Trapping and Optical Micromanipulation XI
Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 16 Jun 2014, In: Proceedings of S P I E - International Society for Optical Engineering. 9164, p. 916411- 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Crosstalk elimination in the detection of dual-beam optical tweezers by spatial filtering
Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 1 May 2014, In: Review of Scientific Instruments. 85, 5, 053108.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
High-speed video-based tracking of optically trapped colloids
Otto, O., Gornall, J. L., Stober, G., Czerwinski, F., Siedel, R. & Keyser, U. F., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044011
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Real-time particle tracking at 10,000 fps using optical fiber illumination
Otto, O., Czerwinski, F., Gornall, J. L., Stober, G., Oddershede, L. B., Seidel, R. & Keyser, U. F., 12 Oct 2010, In: Optics Express. 18, 22, p. 22722-22733 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Plasma proteome analysis of patients with type 1 diabetes with diabetic nephropathy
Overgaard, A. J., Hansen, H. G., Lajer, M., Pedersen, L., Tarnow, L., Rossing, Peter, McGuire, J. N. & Pociot, Flemming, 2010, In: Proteome Science. 8, p. 4 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems
Palarasah, Y., Skjødt, Mikkel-Ole, Vitved, L., Andersen, T. E., Skjoedt, K. & Koch, C., Mar 2010, In: Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bending of a lipid membrane edge by annexin A5 trimers
Pandey, M. P., Telles de Souza, P. C., Pezeshkian, Weria & Khandelia, H., 2024, In: Biophysical Journal. 123, 8, p. 1006-1014 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Universality of rescaled curvature distributions
Pato, M., Schaadt, K., Tufaile, A., Ellegaard, Clive Sigurd, Nogueira, T. & Sartorelli, J., 1 Mar 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 3, p. 037201
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Three-dimensional optical control of individual quantum dots
Jauffred, Liselotte, Richardson, A. C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 10, p. 3376-3380
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantum dots as handles for optical manipulation
Jauffred, Liselotte, Sletmoen, M., Czerwinski, F. & Oddershede, L. B., 27 Aug 2010, In: Proceedings of SPIE, the International Society for Optical Engineering. 7762
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Two-photon quantum dot excitation during optical trapping
Jauffred, Liselotte & Oddershede, L. B., 19 Apr 2010, In: Nano Letters. 10, 5, p. 1927-1930 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sub-diffraction positioning of a two-photon excited and optically trapped quantum dot
Jauffred, Liselotte, Kyrsting, A. H., Christensen, E. A., Seyyed Reihani, S. N. & Oddershede, L. B., 6 May 2014, In: Nanoscale. 6, 12, p. 6997-7003
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical Trapping of Gold Nanoparticles in Air
Jauffred, Liselotte, Taheri, S. M., Schmitt, R., Linke, H. & Oddershede, L. B., 1 Jul 2015, In: Nano Letters. 15, 7, p. 4713-4719
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dickkopf1 - a new player in modelling the wnt pathway
Pedersen, L., Krishna, S. & Jensen, Mogens Høgh, 12 Oct 2011, In: P L o S Computational Biology. 6, 10, p. e25550
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Biological systems on a small scale
Pedersen, L., 2012, Center for Ice & Climate: Faculty of Science, University of Copenhagen. 184 p.
Research output: Book/Report › Ph.D. thesis
Published
The Role of MOR and the CI operator sites on the genetic switch temperate bacteriophage TP901-1
Pedersen, M. & Hammer, K., 9 Dec 2008, In: Journal of Molecular Biology. 384, 3, p. 577-589
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutational analysis of two structural genes of the remperate lactococcal bacteriophage TP901-1 involved in tail length determination and baseplate assembly
Pedersen, M., Østergaard, S., Bresciani, J. & Vogensen, F. K., 25 Oct 2000, In: Virology. 276, 2, p. 315-328 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mutational analysis of the activator of late transcription, alt, in the lactococcal bacteriophage TP901-1
Pedersen, M. & Hammer, K., 27 Oct 2007, In: Archives of Virology. 152, 2, p. 305-320 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Repression of the lysogenic P_R promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite O_M-O_R operator
Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, Leila, Sneppen, Kim, Hammer, K. & Kilstrup, M., 26 May 2020, In: Scientific Reports. 10, 1, 13 p., 8659.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1
Pedersen, M., Lo Leggio, Leila, Grossmann, J. G., Larsen, Sine & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Characterization of the CI repressor protein encoded by the temperate lactococcal phage TP901-1
Pedersen, M., Ligowska, M. & Hammer, K., 15 Apr 2010, In: Journal of Bacteriology. 192, 8, p. 2102-2110 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli
Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming
Perera Pérez, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, S., S. Monteiro, Rita, Trusina, Ala & Brickman, Joshua Mark, 15 Aug 2022, In: eLife. 11, 23 p., e78967.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mechanical Signals in Nerves during Action Potential Propagation
Gonzalez-Perez, Alfredo & Heimburg, Thomas Rainer, 29 Jan 2013, In: Biophysical Journal. 104, 2, p. 78A-78A
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Polymersomes mimic biofilms fractal growth
Gonzalez-Perez, Alfredo, Feld, K. & Ruso, J. M., 1 Sep 2016, In: Journal of Polymer Research. 23, 9, 195.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Solitary electromechanical pulses in lobster neurons
Gonzalez-Perez, Alfredo, Mosgaard, L. D., Budvytyte, R., Villagran-Vargas, E., Jackson, Andrew D. & Heimburg, Thomas Rainer, Sep 2016, In: Biophysical Chemistry. 216, p. 51-59
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Proteins and Peptides in Biomimetic Polymeric Membranes
Gonzalez-Perez, Alfredo, 5 Mar 2013, Proteins in Solution and at Interface: Methods and Applications in Biotechnology and Materials Science. Ruso, J. M. & Piñeiro, A. (eds.). Hoboken, NJ, USA. : Wiley, p. 283-290 8 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
Changes in self-assemblies induced by temperature, concentration and light
Gonzalez-Perez, Alfredo & Sanchez-Dominguez, M., 1 Jan 2013, In: Frontiers in bioscience (Scholar edition). 5, p. 611-630
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A Versatile Approach towards the Compaction, Decompaction, and Immobilization of DNA at Interfaces by Using Cyclodextrins
Gonzalez-Perez, Alfredo & Ruso, J. M., 5 Aug 2013, In: ChemPhysChem. 14, 11, p. 2544-2553
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity
Perni, M., Galvagnion, C., Maltsev, A., Meisl, G., Müller, M. B. D., Challa, P. K., Kirkegaard, J. B., Flagmeier, P., Cohen, S. I. A., Cascella, R., Chen, S. W., Limbocker, R., Sormanni, P., Heller, G. T., Aprile, F. A., Cremades, N., Cecchi, C., Chiti, F., Nollen, E. A. A., Knowles, T. P. J. & 4 others, Vendruscolo, M., Bax, A., Zasloff, M. & Dobson, C. M., 7 Feb 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 6, p. E1009-E1017
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Thermodynamics of lipid multi-lamellar vesicles in presence of sterols at high hydrostatic pressure
Peters, J., Marion, J., Becher, F. J., Trapp, M., Gutberlet, T., Bicout, D. J. & Heimburg, Thomas Rainer, 10 Nov 2017, In: Scientific Reports. 7, 15339.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ekspertrapport af d. 23. oktober 2020: Incidens og fremskrivning af COVID-19 tilfælde
Petersen, Troels Christian & Heltberg, Mathias Spliid, 23 Oct 2020, Statens Seruminstitut. 25 p.
Research output: Book/Report › Report › peer-review
Published
Ekspertrapport af den 10. december 2020: Effekten af kontaktopsporing
Petersen, Troels Christian & Heltberg, Mathias Spliid, 10 Dec 2020, Statens Seruminstitut. 28 p.
Research output: Book/Report › Report › peer-review
Published
Notat om effekten af nedlukning frem til jul
Petersen, Troels Christian & Heltberg, Mathias Spliid, 6 Dec 2020, Statens Seruminstitut. 18 p.
Research output: Book/Report › Report › peer-review
Published
Ekspertrapport af 20. september 2021: Scenarier for udviklingen i smitte, nyindlæggelser og gennembrudsinfektioner med covid-19
Petersen, Troels Christian & Heltberg, Mathias Spliid, 20 Sep 2021, Statens Seruminstitut. 58 p.
Research output: Book/Report › Report › peer-review
Published
Ekspertrapport af den 15. januar 2021: Prognoser for smittetal med fokus på udviklingen i cluster B.1.1.7
Petersen, Troels Christian & Heltberg, Mathias Spliid, 15 Jan 2021, Statens Seruminstitut. 17 p.
Research output: Book/Report › Report › peer-review
Published
Ekspertrapport af den 4. juni 2021: Prognoser for udviklingen af epidemien henover sommeren 2021
Petersen, Troels Christian & Heltberg, Mathias Spliid, 4 Jun 2021, Statens Seruminstitut. 22 p.
Research output: Book/Report › Report › peer-review
Published
Notatet er opdateret d. 22. januar 2021 med en præcisering af formuleringer vedrørende udviklingen i forholdet mellem Cluster B.1.1.7 og øvrige virusvarianter: Scenarier for udviklingen i den engelske virusvariant af SARS-COV-2 (cluster B.1.1.7)
Petersen, Troels Christian & Heltberg, Mathias Spliid, 2 Jan 2021, Statens Seruminstitut. 9 p.
Research output: Book/Report › Report › peer-review
Published
Ekspertrapport af den 21. februar 2021: Prognoser for smittetal og indlæggelser ved genåbningsscenarier d. 1. marts
Petersen, Troels Christian & Heltberg, Mathias Spliid, 21 Feb 2021, Statens Seruminstitut. 81 p.
Research output: Book/Report › Report › peer-review
Published
Teknisk baggrundsrapport den 26. marts 2021
Petersen, Troels Christian & Heltberg, Mathias Spliid, 26 Mar 2021, Statens Seruminstitut. 63 p.
Research output: Book/Report › Report › peer-review
Published
Mesoscale simulation of biomembranes with FreeDTS
Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Double-replica theory for evolution of genotype-phenotype interrelationship
Pham, Minh Tuan & Kaneko, Kunihiko, 21 Apr 2023, In: Physical Review Research. 5, 2, 13 p., 023049.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Two dimensional bias correction of temperature and precipitation copulas in climate models
Piani, C. & Härter, Jan Olaf Mirko, 16 Oct 2012, In: Geophysical Research Letters. 39, p. L20401
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Using data-and network science to reveal iterations and phase-transitions in the design process
Piccolo, S., Jørgensen, Sune Lehmann & Maier, A., 2017, In: Proceedings of the International Conference on Engineering Design, ICED. 2, DS87-2, p. 11-20 10 p.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Design process robustness: A bipartite network analysis reveals the central importance of people
Piccolo, S. A., Jørgensen, Sune Lehmann & Maier, A., 2018, In: Design Science. 4
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quality control system response to stochastic growth of amyloid fibrils
Pigolotti, S., Lizana, L., Sneppen, Kim & Otzen, D., 2 May 2013, In: F E B S Letters. 587, 9, p. 1405-1410 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
How Gaussian competition leads to lumpy or uniform species distributions
Pigolotti, S., Lopez, C., Hermandez-Garcia, E. & Andersen, K. H., 1 May 2011, In: Theoretical Ecology. 3, 2, p. 89-96 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Speciation-rate dependence in species-area relationships
Pigolotti, S. & Cencini, M., 7 Sep 2009, In: Journal of Theoretical Biology. 260, 1, p. 83-89 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Population Genetics in Compressible Flows
Pigolotti, S., Benzi, R., Jensen, Mogens Høgh & Nelson, D. R., 23 Mar 2012, In: Physical Review Letters. 108, 12, p. 128102 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Symbolic dynamics of biological feedback networks
Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2009, In: Physical Review Letters. 102, 8, p. 088701
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Oscillation patterns in negative feedback loops
Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2008, In: Proceedings of the National Academy of Science of the United States of America. 104, 16, p. 6533-6537
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Bifractal nature of chromosome contact maps
Pigolotti, S., Jensen, Mogens Høgh, Zhan, Y. & Tiana, G., 15 Oct 2020, In: Physical Review Research. 2, 4, 9 p., 043078.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Growth, competition and cooperation in spatial population genetics
Pigolotti, S., Benzi, R., Perlekar, P., Jensen, Mogens Høgh, Toschi, F. & Nelson, D. R., 1 Mar 2013, In: Theoretical Population Biology. 84, p. 72-86
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Equilibrium Strategy and Population-Size Effects in Lowest Unique Bid Auctions
Pigolotti, S., Bernhardsson, P. J. S., Juul, J. S., Galster, G. & Vivo, P., 22 Feb 2012, In: Physical Review Letters. 108, 8, p. 088701 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Coexistence and invasibility in a two-species competition model with habitat-preference
Pigolotti, S. & Cencini, M., 21 Aug 2010, In: Journal of Theoretical Biology. 265, 4, p. 609-617 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Symbolic dynamics in genetic oscillation patterns: Chapter in " The Complexity of dynamical systems: a multidisciplinary perspective" p.99-118, eds. Johan Dubbeldam, Kirk Green, Daan Lanstra
Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2011, The Complexity of Dynamical systems: a multidisciplinary perspective. Wiley Publishing ed. USA: Wiley-VCH, p. 99-118 19 p.
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Published
A specific assay for quantification of human C4c by use of an anti-C4c monoclonal antibody
Pilely, K., Skjødt, Mikkel-Ole, Nielsen, C., Andersen, T. E., Louise Aabom, A., Vitved, L., Koch, C., Skjødt, K. & Palarasah, Y., Mar 2014, In: Journal of Immunological Methods. 405, p. 87-96 10 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations
Ping, D., Wang, T., Fraebel, D. T., Maslov, S., Sneppen, Kim & Kuehn, S., 1 Aug 2020, In: ISME Journal. 14, 8, p. 2007-2018 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Activity pulses induce spontaneous flow reversals in viscoelastic environments
Plan, E. L. C. V. I. M., Yeomans, J. M. & Doostmohammadi, Amin, 14 Apr 2021, In: Interface Focus. 18, 177, 7 p., 20210100.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-sustained oscillations of active viscoelastic matter
Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Active matter in a viscoelastic environment
Plan, E. L. C. V. M., Yeomans, J. M. & Doostmohammadi, Amin, 24 Feb 2020, In: Physical Review Fluids. 5, 2, 15 p., 023102.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dosimetric benefit of DMLC tracking for conventional and sub-volume boosted prostate intensity-modulated arc radiotherapy
Pommer, T., Falk, M., Poulsen, P. R., Keall, P. J., O'Brien, R. T., Petersen, P. M. & Munck af Rosenschöld, P. M., 7 Apr 2013, In: Physics in Medicine and Biology. 58, 7, p. 2349-2361
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The impact of leaf width and plan complexity on DMLC tracking of prostate intensity modulated arc therapy
Pommer, T., Falk, M., Poulsen, P. R., Keall, P. J., O'Brien, R. T. & Munck af Rosenschöld, P. M., 1 Nov 2013, In: Medical Physics. 40, 11, 111717.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The role of Rydberg states in photoionization of NO2 and (NO+, O-) ion pair formation induced by one VUV photon
Poullian, S. M., Veyrinas, K., Billaud, P., Lebech, M., Picard, Y., Lucchese, R. R. & Dowek, D., 28 Jul 2013, In: Journal of Chemical Physics. 139, 4, 044311.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Network formation of DMPG dispersions studied by light scattering, SANS, SAXS and calorimetry
Preu, J., Gutberiet, T. & Heimburg, Thomas Rainer, 2007, In: Chemistry and Physics of Lipids. Suppl. S, p. S40-S40
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Adhesion ability of angiotensin II with model membranes
Preu, J., Tiefenauer, L. & Gutberlet, T., 1 Feb 2017, In: B B A - Biomembranes. 1859, 2, p. 195-200
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Use of small angle neutron scattering to study the interaction of angiotensin II with model membranes
Preu, J., Jaeger, T., Garamus, V. M. & Gutberlet, T., 1 May 2011, In: European Biophysics Journal. 40, 5, p. 687-698
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Precision-dissipation trade-off for driven stochastic systems
Proesmans, Karel Josef A, 24 Aug 2023, In: Communications Physics. 6, 1, 6 p., 226.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Investigation of the mobility of liquid nano-inclusions of lead in crystalline aluminum with dislocations
Prokofjev, S., Zhilin, V., Johnson, Erik, Levinsen, Mogens & Dahmen, U., 2003, Proceedings of fifth International Conference. p. 487-496
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
The role of gender in social network organization
Psylla, I., Sapiezynski, P., Mones, E. & Lehmann, S., 20 Dec 2017, In: PLOS ONE. 12, 12, e0189873.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Entropy production and coarse graining in Markov processes
Puglisi, A., Rondoni, L., Vulpiani, A. & Pigolotti, S., 20 May 2010, In: Journal of Statistical Mechanics: Theory and Experiment. 2010, p. P05015 26 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical trapping reveals differences in dielectric and optical properties of copper nanoparticles compared to their oxides and ferrites
Purohit, P., Samadi, A., Bendix, Poul Martin, Laserna, J. J. & Oddershede, L. B., 27 Jan 2020, In: Scientific Reports. 10, 1, 10 p., 1198.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Diffusion dynamics and characterization of attogram masses in optically trapped single nanoparticles using laser-induced plasma imaging
Purohit, P., Fortes, F. J. J. & Laserna, J., 22 Feb 2023, In: Nano Research. 16, p. 7470-7480 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
NUCLEAR-STRUCTURE STUDIES WITH PICK-UP REACTIONS ON EVEN TELLURIUM NUCLEI - THE TE-128(D,T)TE-127 AND THE TE-128(TAU,ALPHA)TE-127 REACTIONS
RODLAND, T., LIEN, J., LOVHOIDEN, G., VAAGEN, J., OYGAARD, V. & Ellegaard, Clive Sigurd, 2 Apr 1985, In: Physica Scripta. Topical Issues. 32, 3, p. 201-209
Research output: Contribution to journal › Journal article › Research › peer-review
Published
DELTA-RESONANCE DECAY AND ABSORPTION IN NUCLEI
ROUSTEAU, S., HENNINO, T., RAMSTEIN, B., BOYARD, J., Ellegaard, Clive Sigurd, GAARDE, C., GOSSET, J., JOURDAIN, J., KAGARLIS, M., LARSEN, J., LEMAIRE, M., LHOTE, D., MORSCH, H., OSTERLUND, M., POITOU, J., RADVANYI, P., ROYSTEPHAN, M., SAMS, T. & ZUPRANSKI, P., 1 Nov 1993, In: Acta Physica Polonica B. 24, 10-11, p. 1747-1756
Research output: Contribution to journal › Journal article › Research › peer-review
Published
EXCITATION OF THE DELTA-RESONANCE IN RELATIVISTIC HEAVY-ION CHARGE-EXCHANGE REACTIONS
ROYSTEPHAN, M., BACHELIER, D., BOYARD, J., CONTARDO, D., Ellegaard, Clive Sigurd, GAARDE, C., GROSSIORD, J., GUICHARD, A., HENNINO, T., JOURDAIN, J., LARSEN, J., PIZZI, J., RADVANYI, P. & TINSLEY, J., 6 Jan 1986, In: Nuclear Physics A: Nuclear and Hadronic Physics. 447, p. C635-C641
Research output: Contribution to journal › Journal article › Research › peer-review
Published
FBAR syndapin 1 recognizes and stabilizes highly curved tubular membranes in a concentration dependent manner
Ramesh, P., Farhangibarooji, Younes, Seyyed Reihani, S. N., Stamou, Dimitrios, Oddershede, L. B. & Bendix, Poul Martin, 31 Jan 2013, In: Scientific Reports. 3, p. 1565-(1-6)
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Delta Production and propagation in nuclei
Ramstein, B., Rousteau, S., Hennino, T., Boyard, JL., Dahl, R., Ellegaard, C., Gaarde, C., Gosset, J., Jourdain, JC., Kagarlis, M., Larsen, JS., Lemaire, MC., LHote, D., Morsch, HP., Osterlund, M., Radvanyi, P., RoyStephan, M., Sams, T., Skousen, M., Spang, W. & 1 others, Zupranski, P., 1 Nov 1996, In: Acta Physica Polonica B. 27, 11, p. 3229-3240
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Inclusive H-2(He-3,t) reaction at 2 GeV
Ramstein, B., Mosbacher, C., Bachelier, D., Berquist, I., Boivin, M., Boyard, J., Brockstedt, A., Carlen, L., Dahl, R., Ekstrom, P., Ellegaard, Clive Sigurd, Gaarde, C., Hennino, T., Jourdain, J., Goodman, C., Larsen, J., Radvanyi, P. & Roy-Stephan, M., 1 Oct 1999, In: The European Physical Journal A: Hadrons and Nuclei. 6, 2, p. 225-233
Research output: Contribution to journal › Journal article › Research › peer-review
Published
²H(³He, t)2p reaction at 2 GeV
Ramstein, B., Mosbacher, C., Hennino, T., Augustyniak, W., Bachelier, D., Bohlen, H. G., Boyard, J. L., Dahl, R. & Ellegaard, Clive Sigurd, 1 Apr 2003, In: European Physical Journal A. 16, 4, p. 583-597
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria
Rasmussen, M. B., Oddershede, L. B. & Siegumfeldt, H., 2008, In: Applied and Environmental Microbiology. 74, 8, p. 2441-2446
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Chaotic Dynamics Mediate Brain State Transitions, Driven by Changes in Extracellular Ion Concentrations
Rasmussen, R., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 27 Dec 2017, In: Cell Systems. 5, 6, p. 591-603
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Vesicle Fusion Observed by Content Transfer across a Tethered Lipid Bilayer
Rawle, B., Lengerich, B., Cheung, M., Bendix, Poul Martin & Boxer, S., 19 Oct 2011, In: Biophysical Journal. 101, 8, p. L37-L39 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Confocal microscopy of thick specimens
Reihani, S. N. S. & Oddershede, L. B., 2009, In: Journal of Biomedical Optics. 14, 3, p. 030513-030513-3 3 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Executive attention control impairments and social anxiety symptoms in children
Reinholdt-Dunne, M. L., Blicher, A., Rinck, M. & Klein, A., 2022, In: Journal of Experimental Psychopathology. 13, 2, 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Pancreatic alpha and beta cells are globally phase-locked
Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Critical Evolution of Damage Toward System-Size Failure in Crystalline Rock
Renard, F., Weiss, J., Mathiesen, Joachim, Ben-zion, Y., Kandula, N. & Cordonnier, B., 1 Feb 2018, In: Journal of Geophysical Reseach. 123, 2, p. 1969-1986
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Basement membrane stiffness determines metastases formation
Reuten, R., Zendehroud, S., Nicolau, M., Fleischhauer, L., Laitala, A., Kiderlen, S., Nikodemus, D., Wullkopf, L., Nielsen, S. R., Mcneilly, S., Prein, C., Rafaeva, M., Schoof, E. M., Furtwängler, B., Porse, B. T., Kim, H., Won, K. J., Sudhop, S., Zornhagen, K. W., Suhr, F. & 11 others, Maniati, E., Pearce, O. M. T., Koch, M., Oddershede, L. B., Van Agtmael, T., Madsen, C. D., Mayorca Guiliani, Alejandro Enrique, Bloch, W., Netz, R. R., Clausen-schaumann, H. & Erler, Janine, 2021, In: Nature Materials. 20, p. 892–903
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Extending the lateral trapping force of optical tweezers - art. no. 664420
Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2007, PROCEEDINGS OF THE SOCIETY OF PHOTO-OPTICAL INSTRUMENTATION ENGINEERS: OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION IV. SPIE - International Society for Optical Engineering, Vol. 6644. p. 64420-64420
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Non-harmonic potential of a single beam optical trap
Richardson, A. C., S. Reihani, S. N. & Oddershede, L. B., 2008, In: Optics Express. 16, 20, p. 15709-15717 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils
Risor, M. W., Juhl, D. W., Bjerring, M., Mathiesen, Joachim, Enghild, J. J., Nielsen, N. C. & Otzen, D. E., 8 Aug 2017, In: Biophysical Journal. 113, 3, p. 580-596
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Viscoelastic and dynamic properties of embryonic stem cells
Ritter, C., 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Optical quantification of forces at play during stem cell differentiation
Ritter, C., Brickman, Joshua Mark & Oddershede, L. B., 4 Mar 2016, In: Proceedings of S P I E - International Society for Optical Engineering. 9764, UNSP 97640J.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Quantifying Force and Viscoelasticity Inside Living Cells Using an Active-Passive Calibrated Optical Trap
Ritter, C. M., Mas, J., Oddershede, L. & Berg-Sørensen, K., 20 Mar 2017, In: Methods in molecular biology (Clifton, N.J.). 1486, p. 513-536 24 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Vesicle Fusion Triggered by Optically Heated Gold Nanoparticles
Rorvig-Lund, A., Bahadori, Azra, Semsey, S., Bendix, Poul Martin & Oddershede, L. B., 1 Jun 2015, In: Nano Letters. 15, 6, p. 4183-4188
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Self-assembly based on hydrotropic counterion - Single-chain amphiphile ion pairs
Rosholm, K. R., Gonzalez-Perez, Alfredo & Mouritsen, Ole G., 1 Oct 2010, In: Colloid and Polymer Science. 288, 14-15, p. 1351-1357 7 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells
Rosholm, K. R., Leijnse, Natascha, Mantsiou, A., Tkach, Vadym, Pedersen, S. L., Wirth, V. F., Oddershede, L. B., Jensen, Knud Jørgen, Martinez, Karen Laurence, Hatzakis, Nikos, Bendix, Poul Martin, Callan-Jones, A. & Stamou, Dimitrios, 8 May 2017, In: Nature Chemical Biology. 13, 7, p. 724-729
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Long-range ordered vorticity patterns in living tissue induced by cell division
Rossen, Ninna Struck, Tarp, J. M., Mathiesen, Joachim, Jensen, Mogens Høgh & Oddershede, L. B., 8 Dec 2014, In: Nature Communications. 5, 5720.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical Investigations of Endothelial Cell Motility
Rossen, Ninna Struck, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.
Research output: Book/Report › Ph.D. thesis
Published
Arachidonic Acid Randomizes Endothelial Cell Motion and Regulates Adhesion and Migration
Rossen, Ninna Struck, Hansen, A., Oddershede, L. B. & Selhuber-Unkel, C. J. M., 23 Sep 2011, In: PLoS ONE. 6, 9, p. e25196
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fiber finding algorithm using stepwise tracing to identify biopolymer fibers in noisy 3D images
Rossen, Ninna Struck, Kyrsting, A., Giaccia, A. J., Erler, Janine & Oddershede, L. B., 2021, In: Biophysical Journal. 120, 18, p. 3860-3868 9 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Networks and Cities: An Information Perspective
Rosvall, M., Trusina, Ala, Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review Letters. 94, 2, 028701.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Networks and our limited information horizon
Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Reinforced communication and social navigation generate groups in model networks
Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Network models of phage-bacteria coevolution
Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Identification of the central intermediate in the extra-embryonic to embryonic endoderm transition through single-cell transcriptomics
Rothová, M. M., Nielsen, Alexander Valentin, Proks, Martin, Wong, Yan Fung, Riveiro, A. R., Linneberg-Agerholm, Madeleine, David, E., Amit, I., Trusina, Ala & Brickman, Joshua Mark, 2022, In: Nature Cell Biology. 24, 6, p. 833-844 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Mean Field Theory for Nonequilibrium Network Reconstruction
Roudi, Y. & Hertz, John, 28 Jan 2011, In: Physical Review Letters. 106, 4, p. 048701 4 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ising model for neural data: Model quality and approximate methods for extracting functional connectivity
Roudi, Y., Tyrcha, J. & Hertz, John, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 5, p. 051915 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Statistical physics of pairwise probability models
Roudi, Y., Aurell, E. & Hertz, John, 2009, In: Frontiers in Computational Neuroscience. 3, 22, p. (art 22) 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dynamical TAP equations for non-equilibrium Ising spin glasses
Roudi, Y. & Hertz, John, 31 Mar 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, 3, p. P03031 18 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Multi-neuronal activity and functional connectivity in cell assemblies
Roudi, Y., Dunn, B. & Hertz, John, 8 Nov 2014, In: Current Opinion in Neurobiology. 32, p. 38-44
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms
Thusgaard Ruhoff, Victoria, Bendix, Poul Martin & Pezeshkian, Weria, 16 Jan 2023, In: Emerging topics in life sciences. 7, 1, p. 81-93 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Strength in numbers: effect of protein crowding on the shape of cell membranes
Thusgaard Ruhoff, Victoria, Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria & Bendix, Poul Martin, 31 Oct 2022, In: Biochemical Society Transactions. 50, 5, p. 1257-1267 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Biological Applications of Thermoplasmonics
Thusgaard Ruhoff, Victoria, Arastoo, Mohammadreza, Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 6 Jan 2024, In: Nano Letters. 24, 3, p. 777-789 13 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effect of energy metabolism on protein motility in the bacterial outer membrane
Ryder, T. W., Xu, L., Berg-Sørensen, K., Brown, Stanley & Oddershede, L. B., 2009, In: Biophysical Journal. 97, 5, p. 1305-1312 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effect of energy metabolism and membrane structure on single ¿-receptor motility
Ryder, T. W., 2009, København: Museum Tusculanum. 101 p.
Research output: Book/Report › Ph.D. thesis
Published
Effect of antibiotics and antimicrobial peptides on single protein motility
Ryder, T. W. & Oddershede, L. B., 2009, In: Current Pharmaceutical Biotechnology. 10, 5, p. 486-493 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantification and comparison of visibility and image artifacts of a new liquid fiducial marker in a lung phantom for image-guided radiation therapy
Rydhog, J. S., Jolck, R. I., Andresen, T. L. & Munck af Rosenschöld, P. M., Jun 2015, In: Medical Physics. 42, 6, p. 2818-2826
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Spontaneous flows and dynamics of full-integer topological defects in polar active matter
Rønning, J., Renaud, J., Doostmohammadi, Amin & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
QUASI-FREE ((D)OVER-RIGHT-ARROW, HE-2) DATA
SAMS, T., Ellegaard, Clive Sigurd, GAARDE, C., LARSEN, J., BOYARD, J., HENNINO, T., JOURDAIN, J., RAMSTEIN, B., ROYSTEPHAN, M., RADVANYI, P., BROCKSTEDT, A., OSTERLUND, M., ZUPRANSKI, P., GOODMAN, C., ICHIMURA, M. & DMITRIEV, V., 1 Apr 1995, In: Physical Review C (Nuclear Physics). 51, 4, p. 1945-1960
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Nematic order condensation and topological defects in inertial active nematics
Saghatchi, R., Yildiz, M. & Doostmohammadi, Amin, 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Evolutionary shaping of low-dimensional path facilitates robust and plastic switching between phenotypes
Sakata, A. & Kaneko, Kunihiko, 26 Dec 2023, In: Physical Review Research. 5, 4, 19 p., 043296.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Effect of coupling asymmetry on mean-field solutions of the direct and inverse Sherrington-Kirkpatrick model
Sakellariou, J., Roudi, Y., Mezard, M. & Hertz, John, 2012, In: Philosophical Magazine. 92, 1-3, p. 272-279 8 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical manipulation of individual strongly absorbing platinum nanoparticles
Samadi, A., Bendix, Poul Martin & Oddershede, L. B., 14 Dec 2017, In: Nanoscale. 9, 46, p. 18449-18455
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Platinum nanoparticles: a non-toxic, effective and thermally stable alternative plasmonic material for cancer therapy and bioengineering
Samadi, A., Klingberg, H., Jauffred, Liselotte, Kjær, Andreas, Bendix, Poul Martin & Oddershede, L. B., 21 May 2018, In: Nanoscale. 10, 19, p. 9097-9107 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical trapping of individual magnetic nanoparticles
Samadi, A., Wang, M., Yang, Y. & Oddershede, L. B., 19 Aug 2018, Optical Trapping and Optical Micromanipulation XV. SPIE - International Society for Optical Engineering, Vol. 10723. 107230E. (Proceedings of SPIE).
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Optical control of strongly absorbing nanoparticles and their potential for photothermal treatment
Samadi, A., Jauffred, Liselotte, Klingberg, H., Bendix, Poul Martin & Oddershede, L. B., 1 Mar 2019, In: Proceedings of SPIE. 10935, 109351A.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
Backscattering-based detection scheme for dark-field optical tweezers
Samadi, A., Mousavi, S. M., Hajizadeh, F. & Reihani, S. N. S., 1 Jun 2019, In: Journal of the Optical Society of America B: Optical Physics. 36, 6, p. 1587-1593
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Low degree metabolites explain essential reactions and enhance modularity in biological networks
Samal...[et al.], A. & Krishna, S., 2006, In: BMC Bioinformatics. 7, 118
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Morphological Instabilities in a growing Yeast Colony: Experiment and Theory
Sams, T., Jensen, Mogens Høgh, Sneppen, Kim, Christensen, B., Ellegaard, Clive Sigurd & Thrane, U., 14 Jul 1997, In: Physical Review Letters. 79, 2, p. 313-316
Research output: Contribution to journal › Journal article › Research
Published
The fitness cost and benefit of phase-separated protein deposits
Sanchez de Groot, N., Torrent Burgas, M., Ravarani, C. N. J., Trusina, Ala, Ventura, S. & Babu, M. M., Apr 2019, In: Molecular Systems Biology. 15, 4, e8075.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The Value of Example Solutions in Pharmacy Education: The role of seniority and gender.
Sandelin, Albin Gustav, Hansen, H. R., Baldursdóttir, S. G., Kristensen, Anders Skov, Bak, Lasse Kristoffer, Christiansen, Frederik Voetmann & Selhuber-Unkel, C. J. M., 2011, In: Pharmacy Education. 11, 1, p. 32-37 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Activity Induced Nematic Order in Isotropic Liquid Crystals
Santhosh, S., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Thampi, S. P., 12 Feb 2020, In: Journal of Statistical Physics. 180, 1-6, p. 699-709 11 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tracking Human Mobility Using WiFi Signals
Sapiezynski, P., Stopczynski, A., Gatej, R. & Jørgensen, Sune Lehmann, 1 Jul 2015, In: PloS one. 10, 7, 013024.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sputtering of Copper Crystals by Soluble and Nonsoluble Ions
Sarholt-Kristensen, L., Johansen, A., Johnson, Erik, Steenstrup, S., Chechenin, N. & Chernysh, V. S., 1991, In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. B59/60, p. 85-88
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Are Local Anesthetics and General Anesthetics Different?
Sasse-Middelhoff, H., Zecchi, K. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 705A-705A
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Prediction of cross-fitness for adaptive evolution to different environmental conditions: Consequence of phenotypic dimensional reduction
Sato, T. U., Furusawa, C. & Kaneko, Kunihiko, 11 Dec 2023, In: Physical Review Research. 5, 4, 14 p., 043222.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Ultrasound resonances in a rectangular plate described by random matrices
Schaadt, K., Simon, G. & Ellegaard, Clive Sigurd, 13 Jun 2001, In: Physica Scripta. T90, p. 231-237
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Experiments on elastomechanical wave functions in chaotic plates and their statistical features
Schaadt, K., Guhr, T., Ellegaard, Clive Sigurd & Oxborrow, M., 1 Sep 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 68, 3, 036205.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Chaotic sound waves in a regular billiard
Schaadt, K., Tufaile, A. & Ellegaard, Clive Sigurd, 1 Feb 2003, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 67, 2, Part 2, 026213.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Sand ripples under water with complex wave motion
Scheibye-Knudsen, K., Ellegaard, Clive Sigurd, Bundgaard, F. & Sams, T., 1 Jul 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, 1, 016209.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tuning of Recombinant Protein Expression in Escherichia coli by Manipulating Transcription, Translation Initiation Rates, and Incorporation of Noncanonical Amino Acids
Schlesinger, O., Chemla, Y., Heltberg, Mathias Spliid, Ozer, E., Marshal, R., Noireaux, V., Jensen, Mogens Høgh & Alfonta, L., 23 Feb 2017, In: A C S Synthetic Biology. 6, 6, p. 1076-1085
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Optical trapping of gold aerosols
Schmitt, R. K., Jauffred, Liselotte, Taheri, S. M., Linke, H. & Oddershede, L. B., 25 Aug 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE - International Society for Optical Engineering, Vol. 9548. 95480F-1
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Published
Amplitude equation and long-rang interactions in underwater sand ripples in one dimension
Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Structural Rearrangements of Pigeon Cryptochrome 4 Undergoing a Complete Redox Cycle
Schuhmann, Fabian Johannes, Ramsay, J. L., Kattnig, D. R. & Solov’yov, I. A., 3 Apr 2024, In: The Journal of Physical Chemistry B. 128, 16, p. 3844-3855 12 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Conformation Regulation of the X Chromosome Inactivation Center: a model
Scialdone, A., Cataudella, I., Barbieri, M. & Nicodemi, M., 1 Oct 2011, In: P L o S Computational Biology. 7, 10, p. e1002229
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Extracting, quantifying, and comparing dynamical and biomechanical properties of living matter through single particle tracking
Scott, S., Weiss, M., Selhuber-Unkel, C., Farhangibarooji, Younes, Sabri, A., Erler, Janine, Metzler, R. & Oddershede, L. B., 22 Dec 2022, In: Physical Chemistry Chemical Physics. 2023, 25, p. 1513-1537 26 p.
Research output: Contribution to journal › Review › Research › peer-review
Published
Domain size and fluctuations at domain interfaces in lipid mixtures
Seeger, H., Fidorra, M. & Heimburg, Thomas Rainer, 2005, In: Biocolloids. 219, p. 85-96
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The chaperone effect in scientific publishing
Sekara, V., Deville, P., Ahnert, S. E., Barabasi, A., Sinatra, R. & Lehmann, S., 11 Dec 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 50, p. 12603-12607
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Fundamental structures of dynamic social networks
Sekara, V., stopczynski, A. & Lehmann, S., 6 Sep 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 36, p. 9977-9982 6 p.
Research output: Contribution to journal › Conference article › Research › peer-review
Published
The Strength of Friendship Ties in Proximity Sensor Data
Sekara, V. & Jørgensen, S. L., 7 Jul 2014, In: P L o S One. 9, 7
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Quantitative optical trapping of single gold nanorods
Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Variety in intracellular diffusion during the cell cycle
Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Variety in intracellular diffusion during the cell cycle
Selhuber-Unkel, C., Yde, Pernille, Berg-Sorensen, K. & Oddershede, L. B., Jun 2009, In: Physical Biology. 6, 2, 9 p., 025015.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Tracking cell-nanoparticle interactions
Selhuber-Unkel, C. J. M., 1 Dec 2009, In: Journal of Biomedical Nanotechnology. 5, 6, Sp.Iss. Sl., p. 634-640 6 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Dominant negative autoregulation limits steady-state repression levels in gene networks
Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Regulatory genes
Semsey, S. & Adhya, S., 2013, Brenner’s online encyclopedia of genetics (Second edition). Maloy, S. & Hughes, K. (eds.). Academic Press, 119 p. 4
Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review
Published
Mutations in Transcriptional Regulators Allow Selective Engineering of Signal Integration Logic
Semsey, S., 25 May 2014, In: mBio (Print). 5, 3, e01171.
Research output: Contribution to journal › Journal article › Research › peer-review
Published
The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli
Semsey, S., Jauffred, Liselotte, Csiszovszki, Z., Erdossy, J., Steger, V., Hansen, S. & Krishna, S., 1 Jul 2013, In: Nucleic Acids Research. 41, 13, p. 6381-6390
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Signal integration in the galactose network of Escherichia coli
Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476
Research output: Contribution to journal › Journal article › Research › peer-review
Published
A Mixed Incoherent Feed-Forward Loop Allows Conditional Regulation of Response Dynamics
Semsey, S., 12 Mar 2014, In: P L o S One. 9, 3, e91243.
Research output: Contribution to journal › Journal article › Research › peer-review

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Short-range correlation of stress chains near solid-to-liquid transition in active monolayers
Research output: Contribution to journal › Journal article › Research › peer-review
Structural Rearrangements of Pigeon Cryptochrome 4 Undergoing a Complete Redox Cycle
Research output: Contribution to journal › Journal article › Research › peer-review
Dynamic control of the Bose-Einstein-like condensation transition in scalar active matter
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