Biocomplexity

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  1. Published

    Directed percolation and puff jamming near the transition to pipe turbulence

    Lemoult, G., Mukund, V., Shih, H., Linga, G., Mathiesen, Joachim, Goldenfeld, N. & Hof, B., 27 May 2024, In: Nature Physics.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Response varibility in balanced cortical networks

    Lerchner..[et al.], A., Ursta, C. & Hertz, John, 2006, In: Neural Computation. 18, 3, p. 634-659

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress

    Lerner, A. G., Upton, J., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, Ala, 8 Aug 2012, In: Cell Metabolism. 16, 2, p. 250-264 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Concomitance in single bubble sonoluminescence of period doubling in emission and shape distortion

    Levinsen, Mogens, 10 Sep 2013, In: Ultrasonics. 54, 2, p. 637-643

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Saturation of Shape Instabilities in Single Bubble Sonoluminescence Saturation

    Levinsen, Mogens, 29 Jul 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 90, 1, 013026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Data collapse of the spectra of water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 5 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 3, p. 036323 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Segregation in water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 13 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, Part 2, p. 016309 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Role of HU in regulation of gal promoters: chapter 17 in Bacterial chromatin p.395-417, eds: C. Dorman and R.Dame

    Lewis...[et al.], D. E. A., Lee, S. J. & Semsey, S., 1 Dec 2010, Tyskland: Springer Science+Business Media. 22 p.

    Research output: Book/Report › Book › peer-review

  9. Published

    Metastable phase characterization in ion implanted and rapidly solidified aluminium-based alloys

    Li, Q., Johnson, Erik, Johansen, A., Yu, L. D., Steenstrup, S., Sarholt-Kristensen, L. & Progrebnyakov, A., 1991, In: Materials Science & Engineering: A. A 134, p. 1170-74

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Switching between oscillations and homeostasis in competing negative and positive feedback motifs

    Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa

    Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Self-similar distributions of fluid velocity and stress heterogeneity in a dissolving porous limestone

    Linga, G., Mathiesen, Joachim & Renard, F., Mar 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 3, p. 1726-1743

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Controlling wetting with electrolytic solutions: Phase-field simulations of a droplet-conductor system

    Linga, G., Bolet, A. & Mathiesen, Joachim, 5 Jul 2018, In: Physical Review E. 98, 1, 11 p., 013101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Transient electrohydrodynamic flow with concentration-dependent fluid properties: Modelling and energy-stable numerical schemes

    Linga, G., Bolet, A. & Mathiesen, Joachim, 1 Jul 2020, In: Journal of Computational Physics. 412, 34 p., 109430.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A two-fluid model for vertical flow applied to CO2 injection wells

    Linga, G. & Lund, H., 1 Aug 2016, In: International Journal of Greenhouse Gas Control. 51, p. 71-80 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Bernaise: A Flexible Framework for Simulating Two-Phase Electrohydrodynamic Flows in Complex Domains

    Linga, G., Bolet, A. & Mathiesen, Joachim, 4 Mar 2019, In: Frontiers in Physics. 7, 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fluid Flows with Complex Interfaces: Modelling and Simulation from Pore to Pipe

    Linga, G., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  18. Published

    Onset of turbulence in channel flows with scale-invariant roughness

    Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images

    Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, Amin & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Diffusion of finite-sized hard-core ineracting particles in a one-dimensional box: tagged particle dynamics

    Lizana, G. L. & Ambjörnsson, T., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, p. 051103 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Time walkers and spatial dynamics of ageing information

    Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Foundation of fractional Langevin equation: Harmonization of a many-body problem

    Lizana, G. L., Ambjørnsson, T., Taloni, A., Barkai, E. & Lomholt, M. A., 14 May 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 5, p. 051118 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Dissimilar bouncy walkers

    Lomholt, M. A. & Lizana, G. L., 28 Jan 2011, In: Journal of Chemical Physics. 134, 8, p. 045101

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Publisher's note: “Dissimilar bouncy walkers” [J. Chem. Phys. 134, 045101 (2011)]

    Lomholt, M. A., Lizana, G. L. & Ambjørnsson, T., 28 Feb 2011, In: Journal of Chemical Physics. 134, 8, p. 088902 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  26. Published

    Deep neural networks identify signaling mechanisms of ErbB-family drug resistance from a continuous cell morphology space

    Longden, J., Robin, X., Engel, M., Ferkinghoff-Borg, J., Kjaer, I., Horak, I. D., Pedersen, M. W. & Linding, R., 19 Jan 2021, In: Cell Reports. 34, 3, 13 p., 108657.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Exploring the complex dynamics of biological oscillators and their downstream effects

    Lucchetti, Alessandra, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 133 p.

    Research output: Book/Report › Ph.D. thesis

  28. Published

    Emergence of chimera states in a neuronal model of delayed oscillators

    Lucchetti, Alessandra, Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 9 Jul 2021, In: Physical Review Research. 3, 3, 8 p., 033041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Effects of City-Size Heterogeneity on Epidemic Spreading in a Metapopulation: A Reaction-Diffusion Approach

    Lund, H., Lizana, G. L. & Simonsen, I., 1 Apr 2013, In: Journal of Statistical Physics. 151, 2, p. 367-382

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    A neutralizing monoclonal antibody for hospitalized patients with Covid-19

    ACTIV-3/TICO LY-CoV555 Study Group, A. L. S. G., 11 Mar 2021, In: New England Journal of Medicine. 384, 10, p. 905-914 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Gender bias in Nobel prizes

    Lunnemann, P., Jensen, Mogens Høgh & Jauffred, Liselotte, 7 May 2019, In: Humanities and social sciences communications. 5, 4 p., 46.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Exploring the Link between Nucleosome Occupancy and DNA Methylation

    Lövkvist, Cecilia, Sneppen, Kim & Härter, Jan Olaf Mirko, 12 Jan 2018, In: Frontiers in Genetics. 8, 7 p., 232.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Modeling spatiotemporal dynamics of DNA methylation

    Lövkvist, Cecilia, 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  34. Published

    DNA methylation in human epigenomes depends on local topology of CpG sites

    Lövkvist, Cecilia, Dodd, I. B., Sneppen, Kim & Härter, Jan Olaf Mirko, 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5123-5132

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Heat Generation by Irradiated Complex Composite Nanostructures

    Ma, H., Tian, P., Pello, J., Bendix, Poul Martin & Oddershede, L. B., 6 Jan 2014, In: Nano Letters. 14, 2, p. 612-619

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Measurements of extreme orientation-dependent temperature increase around an irradiated gold nanorod: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA)

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 10 Oct 2012, In: Proceedings of SPIE. 8458, p. 84581R

    Research output: Contribution to journal › Conference article › Research › peer-review

  37. Published

    Thermo-plasmonics of Irradiated Metallic Nanostructures

    Ma, H., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 123 p.

    Research output: Book/Report › Ph.D. thesis

  38. Published

    Large-Scale Orientation Dependent Heating from a Single Irradiated Gold Nanorod

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 2012, In: Nano Letters. 12, 8, p. 3954-3960 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Defining Network Topologies that Can Achieve Biochemical Adaptation

    Ma, W., Trusina, Ala, El-Samad, H., Lim, W. A. & Tang, C., 21 Aug 2009, In: Cell. 138, 4, p. 760-773

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Efficacy of Lower-Body Shielding in Computed Tomography Fluoroscopy-Guided Interventions

    Mahnken, A. H., Sedlmair, M., Ritter, C., Banckwitz, R. & Flohr, T., 1 Dec 2012, In: Cardiovascular and Interventional Radiology. 35, 6, p. 1475-1479 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Analyzing powers of inelastic dp scattering in the energy region of Delta and Roper resonances excitation

    Malinina, LV., Alkhazov, GD., Augustyniak, W., Boivin, M., Boyard, JL., Dahl, R., Drews, M., Ellegaard, C., Fahri, L., Gaarde, C., Hennino, T., Jourdain, JC., Kagarlis, M., Kravtsov, AV., Kunne, R., Larsen, JS., Morsch, P., Mylnikov, VA., Orischin, EA., Perdrisat, CF. & 15 others, Piskunov, N., Prokofiev, A., Punjabi, V., Radvanyi, P., Ramstein, B., Razmyslovich, B., Roy-Stephan, M., Sitnik, I., Skousen, M., Strokovsky, E., Tkach, I., Tomasi-Gustafsson, E., Volkov, S., Zhdanov, A. & Zupranski, P., 1 Dec 2001, In: Physical Review C (Nuclear Physics). 64, 6, 064001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Work statistics at first-passage times

    Mamede, I. N., Singh, Prashant, Pal, A., Fiore, C. E. & Proesmans, Karel Josef A, 19 Mar 2024, In: New Journal of Physics. 26, 3, 20 p., 033034.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Thermodynamics of interacting systems: The role of the topology and collective effects

    Mamede, I. N., Proesmans, Karel Josef A & Fiore, C. E., 22 Dec 2023, In: Physical Review Research. 5, 4, 12 p., 043278.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The impact of involved node, involved field and mantle field radiotherapy on estimated radiation doses and risk of late effects for pediatric patients with Hodgkin lymphoma

    Maraldo, M. V., Jorgensen, M., Brodin, N. P., Aznar, M. C., Vogelius, Ivan R. , Petersen, P. M., Berthelsen, A. K., Christensen, C. B., Hjalgrim, L. L. & Specht, Lena, 1 Apr 2014, In: Pediatric Blood & Cancer. 61, 4, p. 717-722 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Estimated risk of cardiovascular disease and secondary cancers with modern highly conformal radiotherapy for early-stage mediastinal Hodgkin lymphoma

    Maraldo, M. V., Brodin, N. P., Aznar, M. C., Vogelius, I. R., Munck af Rosenschöld, P. M., Petersen, P. M. & Specht, Lena, 1 Aug 2013, In: Annals of Oncology. 24, 8, p. 2113-2118

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Doses to Carotid Arteries After Modern Radiation Therapy for Hodgkin Lymphoma: Is Stroke Still a Late Effect of Treatment?

    Maraldo, M. V., Brodin, N. P., Aznar, M. C., Petersen, P. M., Munck af Rosenschöld, P. M. & Specht, Lena, 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. 297-303

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Population dynamics of phage-bacteria ecosystems under challenging conditions

    Marantos, Anastasios, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/Report › Ph.D. thesis

  48. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Toward Larger DNA Origami

    Marchi, A. N., Saaem, I., Vogen, B. N., Brown, Stanley & LaBean, T. H., 2014, In: Nano Letters. 14, 10, p. 5740-5747 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Gliomas induce and exploit microglial MT1-MMP expression for tumor expansion

    Markovic, D. S., Vinnakota, K., Chirasani, S., Synowitz, M., Raguet, H., Stock, K., Sliwa, M., Lehmann, S., Kälin, R., van Rooijen, N., Holmbeck, Kenn, Heppner, F. L., Kiwit, J., Matyash, V., Lehnardt, S., Kaminska, B., Glass, R. & Kettenmann, H., 28 Jul 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 30, p. 12530-5 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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