Biocomplexity

  1. Published

    Detecting limit cycles in stochastic time series

    Martiny, E. S., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 17 Feb 2022, In: Physica A: Statistical Mechanics and its Applications. 605, 10 p., 127917.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Models of low data stochastic time series in Cell dynamics and Covid-19

    Martiny, E. S., 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 74 p.

    Research output: Book/ReportPh.D. thesis

  3. Published

    Circuit architecture explains functional similarity of bacterial heat shock responses

    Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Spreading out of perturbations in reversible reaction networks

    Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Severe population collapses and species extinctions in multihost epidemic dynamics

    Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Diversity Waves in Collapse-Driven Population Dynamics

    Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Well-temperate phage: optimal bet-hedging against local environmental collapses

    Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

    Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Toolbox model of evolution of prokaryotic metabolic networks and their regulation

    Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.

    Research output: Contribution to journalConference articleResearchpeer-review

  11. Published

    Elasticity with arbitrarily shaped inhomogeneity

    Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Tip Splittings and Phase Transitions in the Dielectric Breakdown Model: Mapping to the Diffusion-Limited Aggregation Model

    Mathiesen, Joachim & Jensen, Mogens Høgh, 1 Jan 2002, In: Physical Review Letters. 88, 23, 1 p., 235505.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Unstructured Lattice Boltzmann methods for efficient simulation of flow in complex porous media: EGU General Assembly 2015

    Mathiesen, Joachim, Misztal, M. K., Matin, R. & Hernandez, A., 1 Jan 2015, In: Geophysical Research Abstracts. 17, 5669.

    Research output: Contribution to journalConference articleResearchpeer-review

  14. Published

    Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity

    Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Dimensions, maximal growth sites, and optimization in the dielectric breakdown model

    Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Dynamics of crystal formation in the Greenland NorthGRIP ice core

    Mathiesen, Joachim, Ferkinghoff-Borg, J., Jensen, Mogens Høgh, Levinsen, Mogens, Olesen, Poul, Dahl-Jensen, Dorthe & Svensson, Anders, 2004, In: Journal of Glaciology. 50, 170, p. 325-328 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Dynamic Fluid Connectivity Controls Solute Dispersion in Multiphase Porous Media Flow

    Mathiesen, Joachim, Linga, G., Misztal, M., Renard, F. & Le Borgne, T., 28 Aug 2023, In: Geophysical Research Letters. 50, 16, 11 p., e2023GL105233.

    Research output: Contribution to journalLetterResearchpeer-review

  18. Published

    Excitable human dynamics driven by extrinsic events in massive communities

    Mathiesen, Joachim, Angheluta, L., Ahlgren, P. T. H. & Jensen, Mogens Høgh, 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17259-17262

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Organizational structure and communication networks in a university environment

    Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Modular networks of word correlations on Twitter

    Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Statistics of co-occurring keywords in confined text messages on Twitter

    Mathiesen, Joachim, Angheluta, L. & Jensen, Mogens Høgh, 1 Sep 2014, In: European Physical Journal. Special Topics. 223, 9, p. 1849-1858 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    "Want to understand the stock market? Just log in to Twitter"

    Mathiesen, Joachim & Angheluta, L., 24 Oct 2013, In: The Conversation.

    Research output: Contribution to journalContribution to newspaper - Newspaper articleCommunication

  23. Published

    From Pore Scale to Turbulent Flow with the Unstructured Lattice Boltzmann Method

    Matin, R., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesis

  24. Published

    Evaluation of the finite element lattice Boltzmann method for binary fluid flows

    Matin, R., Misztal, M. K., Hernandez-Garcia, A. & Mathiesen, Joachim, 15 Jul 2017, In: Computers and Mathematics with Applications. 74, 2, p. 281-291

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    A simulation-based study of micron scale, binary flows in porous rocks

    Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, 6 Jun 2016, CMG 2016: 31st IUGG Conference on Mathematical Geophysics, Paris. Geo-Physics, from Mathematics to Experiments. Paris, France

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearch

  26. Published

    Finite-element lattice Boltzmann simulations of contact line dynamics

    Matin, R., Krzysztof Misztal, M., Hernández-garcía, A. & Mathiesen, Joachim, 19 Jan 2018, In: Physical Review E. 97, 1, 013307.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Simulating Anomalous Dispersion and Multiphase Segregation in Porous Media with the Lattice Boltzmann Method

    Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  28. Published

    Coherent structures in turbulent square duct flow

    Matin, R., Hellström, L. H. O., Hernandez, A., Mathiesen, Joachim & Smits, A. J., 2018, In: International Journal of Heat and Fluid Flow. 74, p. 144-153

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Avoidance of error catastrophe via proofreading innate to template-directed polymerization

    Matsubara, Y. J., Takeuchi, N. & Kaneko, Kunihiko, 13 Mar 2023, In: Physical Review Research. 5, 13 p., 013170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Generic optimization by fast chaotic exploration and slow feedback fixation

    Matsushita, Y. & Kaneko, Kunihiko, 10 Apr 2023, In: Physical Review Research. 5, 7 p., 023017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Deformation Precursors to Catastrophic Failure in Rocks

    McBeck, J. A., Aiken, J. M., Mathiesen, Joachim, Ben-Zion, Y. & Renard, F., 28 Dec 2020, In: Geophysical Research Letters. 47, 24, 9 p., e2020GL090255.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Bacteria solve the problem of crowding by moving slowly

    Meacock, O. J., Doostmohammadi, Amin, Foster, K. R., Yeomans, J. M. & Durham, W. M., 23 Nov 2020, In: Nature Physics. 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Nested feedback loops in gene regulation

    Mengel, A. B., Krishna, S., Jensen, Mogens Høgh & Trusina, Ala, 1 Jan 2012, In: Physica A: Statistical Mechanics and its Applications. 391, 1-2, p. 100-106

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Effects of Growth and Mutation on Pattern Formation in Tissues

    Mengel, A. B., Krishna, S., Chakraborty, S., Pigolotti, S., Sekara, V., Semsey, S. & Jensen, Mogens Høgh, 9 Nov 2012, In: P L o S One. 7, 11, p. e48772

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans

    Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.

    Research output: Book/ReportPh.D. thesis

  36. Published

    Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

    Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

    Merksamer, P., Trusina, Ala & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Mechanical Forcing of Convection by Cold Pools: Collisions and Energy Scaling

    Meyer, B. & Härter, Jan Olaf Mirko, 26 Oct 2020, In: Journal of Advances in Modeling Earth Systems. 12, 11, 20 p., e2020MS002281.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    The length distribution of frangible biofilaments

    Michaels, T. C. T., Yde, Pernille, Willis, J. C. W., Jensen, Mogens Høgh, Otzen, D., Dobson, C. M., Buell, A. K. & Knowles, T. P. J., 28 Oct 2015, In: Journal of Chemical Physics. 143, 16

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Theory for the stability and regulation of epigenetic landscapes

    Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Machine-learning vs. logistic regression for preoperative prediction of medical morbidity after fast-track hip and knee arthroplasty—a comparative study

    Michelsen, C., Jørgensen, C. C., Heltberg, Mathias Spliid, Jensen, Mogens Høgh, Lucchetti, Alessandra, Petersen, P. B., Petersen, T., Kehlet, Henrik, Madsen, F., Hansen, T. B., Gromov, Kirill, Jakobsen, T., Varnum, C., Overgaard, S., Andersen, Mikkel Rathsach & Hansen, L., 29 Nov 2023, In: BMC Anesthesiology. 23, 1, 12 p., 391.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Self-organization of structures and networks from merging and small-scale fluctuations

    Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. E-pub ahead of print

    Nature Exposure is Associated With Reduced Smartphone Use

    Minor, Kelton Ray, Glavind, Kristoffer Lind, Schwartz, A. J., Danforth, C. M., Lehmann, S. & Bjerre-Nielsen, Andreas, 27 Apr 2023, (E-pub ahead of print) In: Environment and Behavior.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Interference of mesoscales in the critical behaviour of polystyrene-cyclohexane: heat capacity and mass density

    Mirzaev, S. Z., Heimburg, Thomas Rainer & Kaatze, U., 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, p. 061502 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Critical behavior of polystyrene-cyclohexane

    Mirzaev, S., Kaatze, U. & Heimburg, Thomas Rainer, 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, part 1, p. 061502 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Multiphase flow of immiscible fluids on unstructured moving meshes

    Misztal, M. K., Erleben, Kenny, Bargteil, A., Fursund, J., Christensen, B. B., Bærentzen, J. A. & Bridson, R., 2014, In: I E E E Transactions on Visualization and Computer Graphics. 20, 1, p. 4-16 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Permeability and Fluid Flow: Presentation at the Phoenix Consortium’s Symposium on Imaging Porous Media and Fluid Flow,

    Misztal, M. K. & Mathiesen, Joachim, 10 Jan 2015, Copenhagen, Denmark

    Research output: Other contributionResearch

  48. Published

    Two-phase Flow Simulations Using the Lattice Boltzmann Method on Unstructured Grids.

    Misztal, M. K., Matin, R., Hernandez, A. & Mathiesen, Joachim, 1 Jul 2015, 224th International Conference on Discrete Simulation of Fluid Dynamics, 13th-17th July. The Royal Society of Edinburgh ed. Edinburgh

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearch

  49. Published

    Detailed analysis of the lattice Boltzmann method on unstructured grids

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Journal of Computational Physics. 297, p. 316-339

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Evaluation of the Unstructured Lattice Boltzmann Method in Porous Flow Simulations

    Misztal, M. K., Matin, R., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.

    Research output: Contribution to conferenceConference abstract for conferenceResearch