Biocomplexity

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  1. 2014
  2. Published

    A kinetic mechanism for cell sorting based on local variations in cell motility

    Strandkvist, C., Juul, J., Baum, B., Kabla, A. J. & Duke, T., 6 Dec 2014, In: Interface Focus. 4, 6, 20140013.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Long-range ordered vorticity patterns in living tissue induced by cell division

    Rossen, Ninna Struck, Tarp, J. M., Mathiesen, Joachim, Jensen, Mogens Høgh & Oddershede, L. B., 8 Dec 2014, In: Nature Communications. 5, 5720.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Intermittent dislocation density fluctuations in crystal plasticity from a phase-field crystal model

    Tarp, J. M., Angheluta, L., Mathiesen, Joachim & Goldenfeld, N., 31 Dec 2014, In: Physical Review Letters. 113, 26, 265503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2015
  6. Published

    Cytoskeletal dynamics

    Bendix, Poul Martin, 2015, Cambridge, Massachusetts, USA

    Research output: Other contribution › Research

  7. Published

    Detailed analysis of the lattice Boltzmann method on unstructured grids

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Journal of Computational Physics. 297, p. 316-339

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Digital signaling decouples activation probability and population heterogeneity

    Kellogg, R. A., Tian, C., Lipniacki, T., Quake, S. R. & Tay, S., 2015, In: eLife. 4, e08931.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Effect of membrane curvature on lateral distribution of membrane proteins

    Bendix, Poul Martin, 2015

    Research output: Other contribution › Research

  10. Published

    Emergent user behavior on Twitter modelled by a stochastic differential equation

    Møllgaard, A. E. & Mathiesen, Joachim, 2015, In: P L o S One. 10, 5, e0123876.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Enforced Scale Selection in Field Theories of Mechanical and Biological Systems

    Tarp, J. M., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 50 p.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    Helical buckling of actin inside filopodia generates traction

    Leijnse, N., Oddershede, L. B. & Bendix, Poul Martin, 2015, In: Proceedings of the National Academy of Sciences USA (PNAS). 112, 1, p. 136-141

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Interferometric detection of single gold nanoparticles calibrated against TEM size distributions

    Zhang, L., Christensen, S., Bendix, Poul Martin, Bhatia, V. K., Loft, Steffen & Stamou, Dimitrios, 2015, In: Small. 11, 29, p. 3550-3555 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Membrane adhesion and phase behavior: I worked with adhesion of membranes to substrates using advances quantitative microscopy techniques. Also, I studied phase behavior of small unilamellar lipid vesicles with respect to their curvature

    Bendix, Poul Martin, 2015, København, Danmark

    Research output: Other contribution › Research

  15. Published

    Membrane dynamics

    Bendix, Poul Martin, 2015

    Research output: Other contribution › Research

  16. Published

    Membrane fusion

    Bendix, Poul Martin, 2015, California, USA

    Research output: Other contribution › Research

  17. Published

    Optical properties of nanoparticles

    Bendix, Poul Martin, 2015, København, Danmark

    Research output: Other contribution › Research

  18. Published

    Photodiode Based Detection for Multiple Trap Optical Tweezers

    Ott, D., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. Published

    Physics Based Investigations of DNA Supercoiling and of Plasmonic Nanoparticles for Photothermal Cancer Therapy

    Nørregaard, K., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 151 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Rotation-limited growth of three-dimensional body-centered-cubic crystals

    Tarp, J. M. & Mathiesen, Joachim, 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 1, 012409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Simulating anomalous dispersion in porous media using the unstructured lattice Boltzmann method

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Müter, D., Jha, D., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Frontiers in Physics. 3, 9 p., 50.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  24. Published

    Why do bacteria regulate public goods by quorum sensing?-How the shapes of cost and benefit functions determine the form of optimal regulation

    Heilmann, Silja, Krishna, S. & Kerr, B., 2015, In: Frontiers in Microbiology. 6, p. 767

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Unstructured Lattice Boltzmann methods for efficient simulation of flow in complex porous media: EGU General Assembly 2015

    Mathiesen, Joachim, Misztal, M. K., Matin, R. & Hernandez, A., 1 Jan 2015, In: Geophysical Research Abstracts. 17, 5669.

    Research output: Contribution to journal › Conference article › Research › peer-review

  26. Published

    Permeability and Fluid Flow: Presentation at the Phoenix Consortium’s Symposium on Imaging Porous Media and Fluid Flow,

    Misztal, M. K. & Mathiesen, Joachim, 10 Jan 2015, Copenhagen, Denmark

    Research output: Other contribution › Research

  27. Published

    Protein reconstitution into freestanding planar lipid membranes for electrophysiological characterization

    Gutsmann, T., Heimburg, Thomas Rainer, Keyser, U., Mahendran, K. R. & Winterhalter, M., 10 Jan 2015, In: Nature Protocols (Print). 10, 1, p. 188-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Comparison of the Photothermal Efficiency of Different Types of Plasmonic Nanoparticles in vitro and in vivo

    Nørregaard, K., Jørgensen, Jesper Tranekjær, Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 171a

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Helical Buckling in Filopodia

    Leijnse, N., Oddershede, L. B. & Bendix, Poul Martin, 27 Jan 2015, In: Biophysical Journal. 108, 2,Suppl 1, p. 139a-139a

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Membrane Curvature Regulates the Localization of G Protein Coupled Receptors and Ras Isoforms

    Stamou, Dimitrios, Rosholm, K. R., Damalas, A., Hatzakis, Nikos, Wirth, V. F., Martinez, Karen Laurence, Leijnse, N., Oddershede, L. B., Bendix, Poul Martin & Pedersen, S. L., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 95a-96a

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    An updated look at actin dynamics in filopodia

    Leijnse, N., Oddershede, L. B. & Bendix, Poul Martin, 1 Feb 2015, In: Cytoskeleton. 72, 2, p. 71-79

    Research output: Contribution to journal › Review › Research › peer-review

  32. Published

    Deformation of phospholipid vesicles in an optical stretcher

    Delabre, U., Feld, K., Crespo, E., Whyte, G., Sykes, C., Seifert, U. & Guck, J., 1 Feb 2015, In: Soft Matter. 11, 30, p. 6075-6088

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The influence of flow, shear stress and adhesion molecule targeting on gold nanoparticle uptake in human endothelial cells

    Klingberg, H., Loft, Steffen, Oddershede, L. B. & Møller, Peter, 1 Feb 2015, In: Nanoscale. 7, 26, p. 11409-11419

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Uptake of gold nanoparticles in primary human endothelial cells

    Klingberg, H., Oddershede, L. B., Loeschner, K., Larsen, E. H., Loft, Steffen & Møller, Peter, 1 Feb 2015, In: Toxicology Research. 4, 3, p. 655-666

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Full simulation of chiral random matrix theory at nonzero chemical potential by complex Langevin

    Mollgaard, A. & Splittorff, Kim, 26 Feb 2015, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). 91, 3, 036007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    PET/CT-guided treatment planning for paediatric cancer patients: a simulation study of proton and conventional photon therapy

    Kornerup, J. S., Brodin, N. P., Bjork-Eriksson, T., Christensen, C. B., Kiil-Berthelsen, A., Aznar, M. C., Hollensen, C., Markova, E. & Af Rosenschold, P. M., 1 Mar 2015, In: British Journal of Radiology. 88, 1047, 20140586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Spatial patterns of competing random walkers

    Hernandez-Garcia, E., Heinsalu, E. & Lopez, C., 1 Mar 2015, In: Ecological Complexity: An International Journal on Biocomplexity in the Environment and Theoretical Ecology. 21, SI, p. 166-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Observation of Motion-Dependent Nonlinear Dispersion with Narrow-Linewidth Atoms in an Optical Cavity

    Westergaard, P. G., Christensen, B. T. R., Tieri, D., Matin, R., Cooper, J., Holland, M., Ye, J. & Thomsen, Jan Westenkær, 4 Mar 2015, In: Physical Review Letters. 114, 9, 093002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A monomer-trimer model supports intermittent glucagon fibril growth

    Kosmrlj, A., Cordsen, P., Kyrsting, A., Otzen, D., Oddershede, L. B. & Jensen, Mogens Høgh, 11 Mar 2015, In: Scientific Reports. 5, 9005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Statistical precipitation bias correction of gridded model data using point measurements

    Härter, Jan Olaf Mirko, Eggert, B., Moseley, C., Piani, C. & Berg, P., 28 Mar 2015, In: Geophysical Research Letters (Online). 42, 6, p. 1919-1929

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Use of PET/CT instead of CT-only when planning for radiation therapy does not notably increase life years lost in children being treated for cancer

    Kornerup, J. S., Brodin, N. P., Christensen, C. B., Bjork-Eriksson, T., Kiil-Berthelsen, A., Borgwardt, L. & af Rosenschold, P. M., Apr 2015, In: Pediatric Radiology. 45, 4, p. 570-581

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae

    Sneppen, Kim & Dodd, I. B., 1 Apr 2015, In: Epigenetics. 10, 4, p. 293-302

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies

    Mitarai, Namiko, Jensen, Mogens Høgh & Semsey, S., 7 Apr 2015, In: mBio (Print). 6, 2, e00059-15 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Cumulants of Hawkes point processes

    Jovanovic, S., Hertz, John & Rotter, S., 7 Apr 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 91, 4, 9 p., 042802.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Minimizing Late Effects for Patients With Mediastinal Hodgkin Lymphoma: Deep Inspiration Breath-Hold, IMRT, or Both?

    Aznar, M. C., Maraldo, M. V., Schut, D. A., Lundemann, M., Brodin, N. P., Vogelius, Ivan R. , Berthelsen, A. K., Specht, Lena & Petersen, P. M., 1 May 2015, In: International Journal of Radiation Oncology, Biology, Physics. 92, 1, p. 169-174

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A 3 ' External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise

    Lalaouna, D., Carrier, M., Semsey, S., Brouard, J., Wang, J., Wade, J. T. & Masse, E., 7 May 2015, In: Molecular Cell. 58, 3, p. 393-405

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Belief propagation and replicas for inference and learning in a kinetic Ising model with hidden spins

    Battistin, C., Hertz, John, Tyrcha, J. & Roudi, Y., 10 May 2015, In: Journal of Statistical Mechanics: Theory and Experiment. 2015, P05021.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Temporal and spatial scaling impacts on extreme precipitation

    Eggert, B., Berg, P., Härter, Jan Olaf Mirko, Jacob, D. & Moseley, C., 29 May 2015, In: Atmospheric Chemistry and Physics. 15, 10, p. 5957-5971

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Quantification and comparison of visibility and image artifacts of a new liquid fiducial marker in a lung phantom for image-guided radiation therapy

    Rydhog, J. S., Jolck, R. I., Andresen, T. L. & Munck af Rosenschöld, P. M., Jun 2015, In: Medical Physics. 42, 6, p. 2818-2826

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Vesicle Fusion Triggered by Optically Heated Gold Nanoparticles

    Rorvig-Lund, A., Bahadori, Azra, Semsey, S., Bendix, Poul Martin & Oddershede, L. B., 1 Jun 2015, In: Nano Letters. 15, 6, p. 4183-4188

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Voices of chemical biology

    Bertozzi, C. R., Stockwell, B. R., Kubicek, S., Dickinson, B. C., Chang, C. J., Schultz, C., Silver, P. A., Gestwicki, J. E., Chiosis, G., Chattopadhyay, A., Butcher, R. A., Park, S. B., Shoichet, B. K., Flitsch, S. L., Zhang, J., Liu, D. R., Ohnishi, Y., Weerapana, E., Williams, A. H., He, C. & 11 others, Moroni, A., Thiel, G., Chang, Y., Waldmann, H., Bogyo, M., Oddershede, L. B., Christopoulos, A., Imperiali, B., Ehrlich, H., Chen, X. & Prescher, J. A., 1 Jun 2015, In: Nature Chemical Biology. 11, 6, p. 378-379

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Restriction modification systems as engines of diversity

    Sneppen, Kim, Semsey, S., Seshasayee, A. S. N. & Krishna, S., 2 Jun 2015, In: Frontiers in Microbiology. 6, 528.

    Research output: Contribution to journal › Journal article › Research › peer-review

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