Biocomplexity

  1. 2017
  2. Published

    Cellular Decision Making by Non-Integrative Processing of TLR Inputs

    Kellogg, R. A., Tian, C., Etzrodt, M. & Tay, S., 4 Apr 2017, In: Cell Reports. 19, 1, p. 125-135

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    The memory remains: Understanding collective memory in the digital age

    Garcia-Gavilanes, R., Mollgaard, A., Tsvetkova, M. & Yasseri, T., 5 Apr 2017, In: Science Advances. 3, 4, e1602368.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?

    Olariu, V., Nilsson, J., Jonsson, H. & Peterson, C., 6 Apr 2017, In: PLOS ONE. 12, 4, e0175251.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Noise-induced polarization switching in complex networks

    Härter, Jan Olaf Mirko, Díaz-Guilera, A. & Ángeles Serrano, M., 11 Apr 2017, In: Physical Review E. 95, 042305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Chirality in microbial biofilms is mediated by close interactions between the cell surface and the substratum

    Jauffred, Liselotte, Vejborg, R. M., Korolev, K. S., Brown, Stanley & Oddershede, L. B., 14 Apr 2017, In: I S M E Journal. 11, 7, p. 1688-1701

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Optical manipulation of hot nanoparticles can mediate selected cell fusion

    Oddershede, L. B., Bahadori, Azra & Bendix, Poul Martin, 18 Apr 2017, In: Proceedings of SPIE. 10252, 1025207.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Reply to "Comment on 'Penetration of Action Potentials During Collision in the Median and Lateral Giant Axons of Invertebrates'"

    Wang, T., Gonzalez-Perez, Alfredo, Budvytyte, R., Jackson, Andrew D. & Heimburg, Thomas Rainer, 24 Apr 2017, In: Physical Review X. 7, 2, 028002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Time Correlations in Mode Hopping of Coupled Oscillators

    Heltberg, Mathias Spliid, Krishna, S. & Jensen, Mogens Høgh, 2 May 2017, In: Journal of Statistical Physics. 167, 3-4, p. 792-805

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells

    Rosholm, K. R., Leijnse, N., Mantsiou, A., Tkach, Vadym, Pedersen, S. L., Wirth, V. F., Oddershede, L. B., Jensen, Knud Jørgen, Martinez, Karen Laurence, Hatzakis, Nikos, Bendix, Poul Martin, Callan-Jones, A. & Stamou, Dimitrios, 8 May 2017, In: Nature Chemical Biology. 13, 7, p. 724-729

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements

    Hao, N., Sneppen, Kim, Shearwin, K. E. & Dodd, I. B., 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5074-5085

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Optically controlled and selective fusion of cells and vesicles using plasmonic nano-heaters

    Bahadori, Azra, Oddershede, L. B. & Bendix, Poul Martin, 19 May 2017, Light Robotics - Structure-mediated Nanobiophotonics. Glückstad, J. & Palima, D. (eds.). Elsevier, 30 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  13. Published

    18F-FDG PET/CT-based early treatment response evaluation of nanoparticle-assisted photothermal cancer therapy

    Norregaard, K., Jørgensen, Jesper Tranekjær, Simon, M., Melander, F., Kristensen, L. K., Bendix, Poul Martin, Andresen, T. L., Oddershede, L. B. & Kjær, Andreas, 24 May 2017, In: PLOS ONE. 12, 5, e0177997.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Contact activity and dynamics of the social core

    Mones, E., Stopczynski, A. & Lehmann, S., 31 May 2017, In: EPJ Data Science. 6

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Hot-nanoparticle-mediated fusion of selected cells

    Bahadori, Azra, Oddershede, L. B. & Bendix, Poul Martin, 31 May 2017, In: Nano Research. 10, 6, p. 2034-2045

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    A deterministic method for estimating free energy genetic network landscapes with applications to cell commitment and reprogramming paths

    Olariu, V., Manesso, E. & Peterson, C., 7 Jun 2017, In: Royal Society Open Science. 4, 6, 160765.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    An alternative approach to the limits of predictability in human mobility

    Ikanovic, E. L. & Mollgaard, A., 19 Jun 2017, In: EPJ Data Science. 6, 12.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Precipitation onset as the temporal reference in convective self-organization

    Härter, Jan Olaf Mirko, Berg, P. & Moseley, C., 28 Jun 2017, In: Geophysical Research Letters. 44, 12, p. 6450-6459

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Impact of Zygosity on Bimodal Phenotype Distributions

    Holst-Hansen, T., Abad, E., Muntasell, A., López-Botet, M., Jensen, Mogens Høgh, Trusina, Ala & Garcia-Ojalvo, J., 11 Jul 2017, In: Biophysical Journal. 113, 1, p. 148-156 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Four simple rules that are sufficient to generate the mammalian blastocyst

    Nissen, Silas Boye, Perera Pérez, Marta, Martin Gonzalez, Javier, Morgani, S. M. C., Jensen, Mogens Høgh, Sneppen, Kim, Brickman, Joshua Mark & Trusina, Ala, 12 Jul 2017, In: PLOS Biology. 15, 7, p. 1-30 e2000737.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Linear nonequilibrium thermodynamics of reversible periodic processes and chemical oscillations

    Heimburg, Thomas Rainer, 14 Jul 2017, In: Physical Chemistry Chemical Physics. 19, 26, p. 17331-17341

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Evaluation of the finite element lattice Boltzmann method for binary fluid flows

    Matin, R., Misztal, M. K., Hernandez-Garcia, A. & Mathiesen, Joachim, 15 Jul 2017, In: Computers and Mathematics with Applications. 74, 2, p. 281-291

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils

    Risor, M. W., Juhl, D. W., Bjerring, M., Mathiesen, Joachim, Enghild, J. J., Nielsen, N. C. & Otzen, D. E., 8 Aug 2017, In: Biophysical Journal. 113, 3, p. 580-596

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Severe population collapses and species extinctions in multihost epidemic dynamics

    Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Existence and construction of large stable food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 8 Sep 2017, In: Physical Review E. 96, 3, 032406.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Expanding the genetic code of a phototrophic organism

    Chemla, Y., Friedman, M., Heltberg, Mathias Spliid, Bakhrat, A., Nagar, E., Schwarz, R., Jensen, Mogens Høgh & Alfonta, L., 10 Sep 2017, In: Biochemistry. 56, 16, p. 2161-2165

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis

    Larsen, Hjalte List, Martin-Coll, L., Nielsen, Alexander Valentin, Wright, C. V. E., Trusina, Ala, Kim, Y. H. & Grapin-Botton, A., 19 Sep 2017, In: Nature Communications. 8, 605.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Class attendance, peer similarity, and academic performance in a large field study

    Kassarnig, V., Bjerre-Nielsen, Andreas, Mones, E., Lehmann, S. & Lassen, David Dreyer, 8 Nov 2017, In: PLOS ONE. 12, 11, p. 1-15 15 p., e0187078.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Thermodynamics of lipid multi-lamellar vesicles in presence of sterols at high hydrostatic pressure

    Peters, J., Marion, J., Becher, F. J., Trapp, M., Gutberlet, T., Bicout, D. J. & Heimburg, Thomas Rainer, 10 Nov 2017, In: Scientific Reports. 7, 15339.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Near-infrared remotely triggered drug-release strategies for cancer treatment

    Goodman, A. M., Neumann, O., Norregaard, K., Henderson, L., Choi, M., Clare, S. E. & Halas, N. J., 21 Nov 2017, In: Proceedings of the National Academy of Sciences USA (PNAS). 114, 47, p. 12419-12424

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Correlations between human mobility and social interaction reveal general activity patterns

    Mollgaard, A., Lehmann, S. & Mathiesen, Joachim, 13 Dec 2017, In: PLOS ONE. 12, 12, e018973.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Optical manipulation of individual strongly absorbing platinum nanoparticles

    Samadi, A., Bendix, Poul Martin & Oddershede, L. B., 14 Dec 2017, In: Nanoscale. 9, 46, p. 18449-18455

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Defective STIM-mediated store operated Ca2+ entry in hepatocytes leads to metabolic dysfunction in obesity

    Arruda, A. P., Pers, B. M., Parlakgul, G., Guney, E., Goh, T., Cagampan, E., Lee, G. Y., Goncalves, R. L. & Hotamisligil, G. S., 15 Dec 2017, In: eLife. 6, e29968.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Remotely controlled fusion of selected vesicles and living cells

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 15 Dec 2017, In: Proceedings of SPIE. 9922, p. 992211-1

    Research output: Contribution to journalConference articleResearchpeer-review

  36. Published

    The role of gender in social network organization

    Psylla, I., Sapiezynski, P., Mones, E. & Lehmann, S., 20 Dec 2017, In: PLOS ONE. 12, 12, e0189873.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Chaotic Dynamics Mediate Brain State Transitions, Driven by Changes in Extracellular Ion Concentrations

    Rasmussen, R., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 27 Dec 2017, In: Cell Systems. 5, 6, p. 591-603

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. 2018
  39. Published

    Bowhead: Bayesian modelling of cell velocity during concerted cell migration

    Engel, M., Longden, J., Ferkinghoff-Borg, J., Robin, X., Saginc, G. & Linding, R., 2018, In: P L o S One. 14, 1, p. 1-10 10 p., e1005900.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Cancer cells' ability to mechanically adjust to extracellular matrix stiffness correlates with their invasive potential

    Wullkopf, L., West, A. K. V., Leijnse, N., Cox, T. R., Madsen, C. D., Oddershede, L. B. & Erler, Janine, 2018, In: Molecular Biology of the Cell. 29, 20, p. 2378-2385 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Coherent structures in turbulent square duct flow

    Matin, R., Hellström, L. H. O., Hernandez, A., Mathiesen, Joachim & Smits, A. J., 2018, In: International Journal of Heat and Fluid Flow. 74, p. 144-153

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Deconstructing the principles of ductal network formation in the pancreas

    Dahl-Jensen, Svend Bertel, Yennek, S., Flasse, L., Larsen, Hjalte List, Sever, D., Karremore, G., Novak, Ivana, Sneppen, Kim & Botton, A., 2018, In: PLOS Biology. 16, 7, 25 p., e2002842.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Dendritic core crystallization in minor planets - an empirically constrained numerical simulation study

    Esbensen, K., Haack, H., Erleben, Kenny & Misztal, M. K., 2018, p. 76. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  44. Published

    Design process robustness: A bipartite network analysis reveals the central importance of people

    Piccolo, S. A., Jørgensen, Sune Lehmann & Maier, A., 2018, In: Design Science. 4

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling

    Vik, D., Mitarai, Namiko, Wulff, N., Halkier, Barbara Ann & Burow, Meike, 2018, In: Frontiers in Plant Science. 9, 16 p., 550.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Electrohydrodynamics in one and two phases

    Bolet, A. J. S., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  47. Published

    Fluid Flows with Complex Interfaces: Modelling and Simulation from Pore to Pipe

    Linga, G., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  48. Published

    Investigation of cancer cell dynamics during division and migration

    West, A. V., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesisResearch

  49. Published

    Modelling the influence of metabolite diffusion on non-starter lactic acid bacteria growth in ripening Cheddar cheese

    Czárán, T., Rattray, F. P., Møller, C. O. D. A. & Christensen, B. B., 2018, In: International Dairy Journal. 80, p. 35-45 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    A growing microcolony can survive and support persistent propagation of virulent phages

    Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Optimizing targeted vaccination across cyber-physical networks: an empirically based mathematical simulation study

    Mones, E., Stopczynski, A., Pentland, A. '., Hupert, N. & Lehmann, S., 1 Jan 2018, In: Journal of the Royal Society. Interface. 15, 138, 9 p., 20170783.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Synergistic effects in threshold models on networks

    Juul, J. S. & Porter, M. A., 1 Jan 2018, In: Chaos. 28, 1, 12 p., 013115.

    Research output: Contribution to journalJournal articleResearchpeer-review