Biocomplexity

  1. 2022
  2. Published

    The thermodynamic soliton theory of the nervous impulse and possible medical implications

    Heimburg, Thomas Rainer, 28 May 2022, In: Progress in Biophysics & Molecular Biology. 173, p. 24-35 12 p.

    Research output: Contribution to journalReviewResearchpeer-review

  3. Published

    Curvature strains as a global orchestrator of morphogenesis

    Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Temperature Controls Onset and Period of NF-kappa B Oscillations and can Lead to Chaotic Dynamics

    Heltberg, Mathias Spliid, von Borries, M., Bendix, Poul Martin, Oddershede, L. B. & Jensen, Mogens Høgh, 20 Jun 2022, In: Frontiers in Cell and Developmental Biology. 10, 14 p., 910738.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Pancreatic alpha and beta cells are globally phase-locked

    Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Bridging microscopic cell dynamics to nematohydrodynamics of cell monolayers

    Ardaševa, Aleksandra, Mueller, R. & Doostmohammadi, Amin, 29 Jun 2022, In: Soft Matter. 18, 25, p. 4737-4746 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Self-sustained oscillations of active viscoelastic matter

    Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Chemophoresis engine: A general mechanism of ATPase-driven cargo transport

    Sugawara, T., Morozov, A. V. (ed.) & Kaneko, Kunihiko, 25 Jul 2022, In: PLOS Computational Biology. 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Nematic order condensation and topological defects in inertial active nematics

    Saghatchi, R., Yildiz, M. & Doostmohammadi, Amin, 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network

    Okubo, K., Kaneko, Kunihiko & Nelson, K. E. (ed.), 29 Jul 2022, In: PNAS Nexus. 1, 3, 12 p., 097.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Onset of turbulence in channel flows with scale-invariant roughness

    Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming

    Perera Pérez, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, S., S. Monteiro, Rita, Trusina, Ala & Brickman, Joshua Mark, 15 Aug 2022, In: eLife. 11, 23 p., e78967.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    The geometry of evolved community matrix spectra

    Lastad, S. B. & Härter, Jan Olaf Mirko, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14668.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Tumor spheroids accelerate persistently invading cancer cells

    Audoin, M., Sogaard, M. T. & Jauffred, Liselotte, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14713.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

    Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Spatiotemporal NF-kappa B dynamics encodes the position, amplitude, and duration of local immune inputs

    Son, M., Frank, T., Holst-Hansen, T., Wang, A. G., Junkin, M., Kashaf, S. S., Trusina, Ala & Tay, S., 2 Sep 2022, In: Science Advances. 8, 35, 14 p., 6240.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    A systematic evaluation on the impact of sample-related and environmental factors in the analytical performance of acoustic emission from laser-induced plasmas

    Bosakova, M., Purohit, P., Alvarez-Llamas, C., Moros, J., Novotny, K. & Laserna, J., 8 Sep 2022, In: Analytica Chimica Acta. 1225, 9 p., 340224.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Spatial heterogeneity affects predictions from early-curve fitting of pandemic outbreaks: a case study using population data from Denmark

    Heltberg, Mathias Spliid, Michelsen, Christian Buus, Martiny, E. S., Christensen, L. E., Jensen, Mogens Høgh, Halasa, T. & Petersen, Troels Christian, 14 Sep 2022, In: Royal Society Open Science. 9, 9, 9 p., 220018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Differentiation of closely related mineral phases in Mars atmosphere using frequency domain laser-induced plasma acoustics

    Alvarez-Llamas, C., Purohit, P., Moros, J. & Laserna, J., 15 Sep 2022, In: Analytica Chimica Acta. 1226, 8 p., 340261.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database

    Tang, Q., Ren, W., Wang, J. & Kaneko, Kunihiko, 7 Oct 2022, In: Molecular Biology and Evolution. 39, 10, 13 p., msac197.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The effect of stretching on nerve excitability

    Heimburg, Thomas Rainer, 7 Oct 2022, In: Human Movement Science. 86, 10 p., 103000.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Comprehensive analysis of gene regulatory dynamics, fitness landscape, and population evolution during sexual reproduction

    Okubo, K. & Kaneko, Kunihiko, 14 Oct 2022, In: New Journal of Physics. 24, 10, 13 p., 103017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Strength in numbers: effect of protein crowding on the shape of cell membranes

    Thusgaard Ruhoff, Victoria, Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria & Bendix, Poul Martin, 31 Oct 2022, In: Biochemical Society Transactions. 50, 5, p. 1257-1267 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Autotoxin-mediated latecomer killing in yeast communities

    Oda, A. H., Tamura, M., Kaneko, Kunihiko, Ohta, K. & Hatakeyama, T. S., 7 Nov 2022, In: PLOS Biology. 20, 11, 23 p., 3001844.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Enhanced DNA repair through droplet formation and p53 oscillations

    Heltberg, Mathias Spliid, Lucchetti, Alessandra, Hsieh, F., Duy Pham Minh Nguyen, Chen, S. & Jensen, Mogens Høgh, 10 Nov 2022, In: Cell. 185, 23, p. 4394-4408 26 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Emerging diversity in a population of evolving intransitive dice

    Kirkegaard, Julius Bier & Sneppen, Kim, 17 Nov 2022, In: Physical Review E. 106, 5, 6 p., 054409.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Uni- and multivariate bias adjustment methods in Nordic catchments: Complexity and performance in a changing climate br

    Tootoonchi, F., Härter, Jan Olaf Mirko, Todorovic, A., Raty, O., Grabs, T. & Teutschbein, C., 20 Dec 2022, In: Science of the Total Environment. 853, 18 p., 158615.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Extracting, quantifying, and comparing dynamical and biomechanical properties of living matter through single particle tracking

    Scott, S., Weiss, M., Selhuber-Unkel, C., Farhangibarooji, Younes, Sabri, A., Erler, Janine, Metzler, R. & Oddershede, L. B., 22 Dec 2022, In: Physical Chemistry Chemical Physics. 2023, 25, p. 1513-1537 26 p.

    Research output: Contribution to journalReviewResearchpeer-review

  30. Published

    Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism

    Himeoka, Y. & Mitarai, Namiko, 30 Dec 2022, In: Physical Review Research. 4, 4, 23 p., 043223.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. 2023
  32. Published

    A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation

    Knudsen, Teresa Emmilie Toudal, Hamilton, W. B., Proks, Martin, Lykkegaard, M., Linneberg-Agerholm, M., Nielsen, Alexander Valentin, Perera Pérez, Marta, Malzard, L. L., Trusina, Ala & Brickman, Joshua Mark, 2023, In: Cell Systems. 14, 9, p. 788-805.e8

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    A linear reciprocal relationship between robustness and plasticity in homeostatic biological networks

    Hatakeyama, T. S. & Kaneko, Kunihiko, 2023, In: PLoS ONE. 18, 1, 11 p., e0277181.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Epidemic modelling of monitoring public behavior using surveys during pandemic-induced lockdowns

    Koher, A., Jørgensen, F., Petersen, M. B. & Lehmann, S., 2023, In: Communications Medicine. 3, 1, 10 p., 80.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Exploring the complex dynamics of biological oscillators and their downstream effects

    Lucchetti, Alessandra, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 133 p.

    Research output: Book/ReportPh.D. thesis

  36. Published

    Fast detection of slender bodies in high density microscopy data

    Alonso, Albert & Kirkegaard, Julius Bier, 2023, In: Communications Biology . 6, 1, 12 p., 754.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

    sgk681, sgk681, Seymour, Philip Allan, Sneppen, Kim, Trusina, Ala, Egeskov-Madsen, A. L. R., Jørgensen, Mette Christine, Jensen, Mogens Høgh & Serup, Palle, 2023, In: Nature Communications. 14, 17 p., 348.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Label-free optical interferometric microscopy to characterize morphodynamics in living plants

    Ebrahimi, Samira, Moreno Pescador, Guillermo Sergio, Persson, Staffan, Jauffred, Liselotte & Bendix, Poul Martin, 2023, In: Frontiers in Plant Science. 14, 8 p., 1156478.

    Research output: Contribution to journalReviewResearchpeer-review

  39. Published

    Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics

    Unterweger, Iris Anne, Klepstad, J., Hannezo, E., Lundegaard, Pia Rengtved, Trusina, Ala & Ober, Elke, 2023, In: PLOS Biology. 21, 10, 30 p., e3002315.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Models of low data stochastic time series in Cell dynamics and Covid-19

    Martiny, E. S., 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 74 p.

    Research output: Book/ReportPh.D. thesis

  41. Published

    Necking and failure of a particulate gel strand: signatures of yielding on different length scales

    Thijssen, Kristian, Liverpool, T. B., Royall, P. C. & Jack, R. L., 2023, In: Soft Matter. 19, 38, p. 7412-7428 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Population dynamics of phage-bacteria ecosystems under challenging conditions

    Marantos, Anastasios, 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/ReportPh.D. thesis

  43. Published

    Protocol to assess metabolic activity of Pseudomonas aeruginosa by measuring heat flow using isothermal calorimetry

    Beilharz, K., Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim, Bjarnsholt, Thomas & Lichtenberg, Mads, 2023, In: STAR Protocols. 4, 2, 102269.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    The improved health utility of once-weekly subcutaneous semaglutide 2.4 mg compared with placebo in the STEP 1-4 obesity trials

    Bjørner, Jakob Bue, Larsen, S., Lübker, C. & Holst-Hansen, T., 2023, In: Diabetes, Obesity and Metabolism. 25, 8, p. 2142-2150 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Ultrafast Laser Excitation Improves LIBS Performance for the Analysis of Optically Trapped Single Nanoparticles Owing to Characteristic Interaction Mechanisms

    Burgos-Palop, C., Purohit, P., Fortes, F. J. & Laserna, J., 2023, In: Analytical Chemistry. 95, 39, p. 14541-14550 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Close, but not too close: a mesoscopic description of (a)symmetry and membrane shaping mechanisms

    Thusgaard Ruhoff, Victoria, Bendix, Poul Martin & Pezeshkian, Weria, 16 Jan 2023, In: Emerging topics in life sciences. 7, 1, p. 81-93 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Homophily-Based Social Group Formation in a Spin Glass Self-Assembly Framework

    Korbel, J., Lindner, S. D., Pham, Minh Tuan, Hanel, R. & Thurner, S., 30 Jan 2023, In: Physical Review Letters. 130, 5, 6 p., 057401.

    Research output: Contribution to journalLetterResearchpeer-review

  48. Published

    Immunostaining protocol for infiltrating brain cancer spheroids for light-sheet imaging

    Bjorknes, B., Neye, O. E., Hamerlik, P. & Jauffred, Liselotte, 9 Feb 2023, In: PLoS ONE. 18, 2, 8 p., 0281161.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2

    Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Collective rotational motion of freely expanding T84 epithelial cell colonies

    Ascione, F., Caserta, S., Esposito, S., Rachela, V. V., Maiuri, L., Nejad, M. R., Doostmohammadi, Amin, Yeomans, J. M. & Guido, S., 22 Feb 2023, In: Journal of the Royal Society Interface. 20, 199, 12 p., 20220719.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Diffusion dynamics and characterization of attogram masses in optically trapped single nanoparticles using laser-induced plasma imaging

    Purohit, P., Fortes, F. J. J. & Laserna, J., 22 Feb 2023, In: Nano Research. 16, p. 7470-7480 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    The excitable fluid mosaic

    Heimburg, Thomas Rainer, 1 Mar 2023, In: B B A - Biomembranes. 1865, 3, 11 p., 184104.

    Research output: Contribution to journalJournal articleResearchpeer-review