Biocomplexity

  1. 2023
  2. Published

    Avoidance of error catastrophe via proofreading innate to template-directed polymerization

    Matsubara, Y. J., Takeuchi, N. & Kaneko, Kunihiko, 13 Mar 2023, In: Physical Review Research. 5, 13 p., 013170.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Group-specific behavior change following terror attacks

    Juul, J. L., Alessandretti, L., Dammeyer, Jesper, Zettler, Ingo, Jørgensen, Sune Lehmann & Mathiesen, Joachim, Apr 2023, In: Journal of Computational Social Science. 6, p. 1-18

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Roadmap for optical tweezers

    Volpe, G., Maragò, O. M., Rubinsztein-Dunlop, H., Pesce, G., Stilgoe, A. B., Volpe, G., Tkachenko, G., Truong, V. G., Chormaic, S. N., Kalantarifard, F., Elahi, P., Käll, M., Callegari, A., Marqués, M. I., Neves, A. A. R., Moreira, W. L., Fontes, A., Cesar, C. L., Saija, R., Saidi, A. & 63 others, Beck, P., Eismann, J. S., Banzer, P., Fernandes, T. F. D., Pedaci, F., Bowen, W. P., Vaippully, R., Lokesh, M., Roy, B., Thalhammer-Thurner, G., Ritsch-Marte, M., García, L. P., Arzola, A. V., Castillo, I. P., Argun, A., Muenker, T. M., Vos, B. E., Betz, T., Cristiani, I., Minzioni, P., Reece, P. J., Wang, F., McGloin, D., Ndukaife, J. C., Quidant, R., Roberts, R. P., Laplane, C., Volz, T., Gordon, R., Hanstorp, D., Marmolejo, J. T., Bruce, G. D., Dholakia, K., Li, T., Brzobohatý, O., Simpson, S. H., Zemánek, P., Ritort, F., Roichman, Y., Bobkova, V., Wittkowski, R., Denz, C., Pavan Kumar, G. V., Foti, A., Donato, M. G., Gucciardi, P. G., Gardini, L., Bianchi, G., Kashchuk, A. V., Capitanio, M., Paterson, L., Jones, P. H., Berg-Sørensen, K., Farhangibarooji, Younes, Oddershede, L. B., Pouladian, P., Preece, D., Adiels, C. B., De Luca, A. C., Magazzù, A., Ciriza, D. B., Iatì, M. A. & Swartzlander, G. A., Apr 2023, In: Journal of Physics-Photonics. 5, 2, 136 p., 022501.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Generic optimization by fast chaotic exploration and slow feedback fixation

    Matsushita, Y. & Kaneko, Kunihiko, 10 Apr 2023, In: Physical Review Research. 5, 7 p., 023017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Thermoplasmonic Vesicle Fusion Reveals Membrane Phase Segregation of Influenza Spike Proteins

    Moreno Pescador, Guillermo Sergio, Arastoo, Mohammadreza, Thusgaard Ruhoff, Victoria, Chiantia, S., Daniels, R. & Bendix, Poul Martin, 11 Apr 2023, In: Nano Letters. 23, 8, p. 3377-3384 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Mechanical basis and topological routes to cell elimination

    Monfared, S., Ravichandran, G., Andrade, J. & Doostmohammadi, Amin, 18 Apr 2023, In: eLife. 12, 20 p., 82435.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Double-replica theory for evolution of genotype-phenotype interrelationship

    Pham, Minh Tuan & Kaneko, Kunihiko, 21 Apr 2023, In: Physical Review Research. 5, 2, 13 p., 023049.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. E-pub ahead of print

    Nature Exposure is Associated With Reduced Smartphone Use

    Minor, Kelton Ray, Glavind, Kristoffer Lind, Schwartz, A. J., Danforth, C. M., Lehmann, S. & Bjerre-Nielsen, Andreas, 27 Apr 2023, (E-pub ahead of print) In: Environment and Behavior.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Transition of social organisations driven by gift relationships

    Itao, K. & Kaneko, Kunihiko, 29 Apr 2023, In: Humanities and Social Sciences Communications. 10, 1, 10 p., 188.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Direct chemical induction of hepatocyte-like cells with capacity for liver repopulation

    Bai, Y., Yang, Z., Xu, X., Ding, W., Qi, J., Liu, F., Wang, X., Zhou, B., Zhang, W., Zhuang, X., Li, G. & Zhao, Y., 1 May 2023, In: Hepatology. 77, 5, p. 1550-1565 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Lateral Organization of Plasma Membrane Proteins Studied Using Thermoplasmonics

    Arastoo, Mohammadreza, 16 May 2023, Niels Bohr Institute ed. Copenhagen, Denmark: University of Copenhagen. 193 p.

    Research output: Book/ReportPh.D. thesisResearch

  13. Published

    Coupled oscillator cooperativity as a control mechanism in chronobiology

    Heltberg, Mathias Spliid, Jiang, Y., Fan, Y., Zhang, Z., Nielsen, Malthe Skytte Nordentoft, Lin, W., Qian, L., Ouyang, Q., Jensen, Mogens Høgh & Wei, P., 17 May 2023, In: Cell Systems. 14, 5, p. 382-391.e5 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Sustainable diversity of phage-bacteria systems

    Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Editorial: Active and Intelligent Living Matter: from Fundamentals to Applications

    Doostmohammadi, Amin, Mazza, M. G., Shendruk, T. N. & Stark, H., 12 Jun 2023, In: Frontiers in Physics. 11, 2 p., 1231716.

    Research output: Contribution to journalEditorialResearchpeer-review

  16. Published

    Tradeoff between speed and reproductive number in pathogen evolution

    Eilersen, Andreas Thomas, Nielsen, Bjarke Frost & Sneppen, Kim, 12 Jun 2023, In: Physical Review Research. 5, 2, 8 p., 023003.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter

    Andersen, Benjamin Halager, Renaud-Mornant, J., Rønning, J., Angheluta, L. & Doostmohammadi, Amin, 14 Jun 2023, In: Physical Review Fluids. 8, 14 p., 063101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Epigenetic switching with asymmetric bridging interactions

    Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Active topological defect absorption by a curvature singularity

    Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Spontaneous flows and dynamics of full-integer topological defects in polar active matter

    Rønning, J., Renaud, J., Doostmohammadi, Amin & Angheluta, L., 21 Jul 2023, In: Soft Matter. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Entropy of different phases formed by soft rods

    Chattopadhyay, Jayeeta, Lin, S. & Maiti, P. K., 3 Aug 2023, In: Journal of Chemical Physics. 159, 5, 11 p., 054503.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Extracellular matrix sensing via modulation of orientational order of integrins and F-actin in focal adhesions

    Grudtsyna, Valeriia, Packirisamy, S., Bidone, T. C. & Swaminathan, V., 10 Aug 2023, In: Life Science Alliance. 6, 10, 16 p., e202301898.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Motility mediates satellite formation in confined biofilms

    Cordero, Mireia, Mitarai, Namiko & Jauffred, Liselotte, 17 Aug 2023, In: ISME Journal. 17, p. 1819-1827 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Precision-dissipation trade-off for driven stochastic systems

    Proesmans, Karel Josef A, 24 Aug 2023, In: Communications Physics. 6, 1, 6 p., 226.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    On the Sensitivity of Convective Cold Pools to Mesh Resolution

    Fiévet, Romain Frédéric Sébastien, Meyer, B. & Härter, Jan Olaf Mirko, 25 Aug 2023, In: Journal of Advances in Modeling Earth Systems. 15, 8, 21 p., e2022MS003382.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Dynamic Fluid Connectivity Controls Solute Dispersion in Multiphase Porous Media Flow

    Mathiesen, Joachim, Linga, G., Misztal, M., Renard, F. & Le Borgne, T., 28 Aug 2023, In: Geophysical Research Letters. 50, 16, 11 p., e2023GL105233.

    Research output: Contribution to journalLetterResearchpeer-review

  27. Published

    Nudging cooperation among agents in an experimental social network

    Jensen, Gorm Gruner, Busch, M. B., Piovesan, Marco & Härter, Jan Olaf Mirko, 12 Sep 2023, In: Applied Network Science. 8, 1, 13 p., 62.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Submitted

    Three-component Bose-Einstein condensates and wetting without walls

    Indekeu, J. O., Thu, N. V. & Berx, Jonas, 24 Sep 2023, (Submitted).

    Research output: Working paperPreprint

  29. Published

    Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations

    Nonn, A., Kiss, B., Pezeshkian, Weria, Tancogne-Dejean, T., Cerrone, A., Kellermayer, M., Bai, Y., Li, W. & Wierzbicki, T., 8 Oct 2023, In: Journal of the Mechanical Behavior of Biomedical Materials. 148, 15 p., 106153.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    The counterintuitive implications of superspreading diseases

    Nielsen, B. F., Sneppen, Kim & Simonsen, L., 31 Oct 2023, In: Nature Communications. 14, 1, 3 p., 6954.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Elasticity tunes mechanical stress localization around active topological defects

    Bonn, Lasse Frederik, Ardaševa, Aleksandra & Doostmohammadi, Amin, 28 Nov 2023, In: Soft Matter. 20, 1, p. 115-123 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Machine-learning vs. logistic regression for preoperative prediction of medical morbidity after fast-track hip and knee arthroplasty—a comparative study

    Michelsen, C., Jørgensen, C. C., Heltberg, Mathias Spliid, Jensen, Mogens Høgh, Lucchetti, Alessandra, Petersen, P. B., Petersen, T., Kehlet, Henrik, Madsen, F., Hansen, T. B., Gromov, Kirill, Jakobsen, T., Varnum, C., Overgaard, S., Andersen, Mikkel Rathsach & Hansen, L., 29 Nov 2023, In: BMC Anesthesiology. 23, 1, 12 p., 391.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Solvable neural network model for input-output associations: Optimal recall at the onset of chaos

    Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Introducing the Automated Ligand Searcher

    Jacobsen, L., Hungerland, J., Bačić, V., Gerhards, L., Schuhmann, Fabian Johannes & Solov’yov, I. A., 11 Dec 2023, In: Journal of Chemical Information and Modeling. 63, 23, p. 7518-7528 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Prediction of cross-fitness for adaptive evolution to different environmental conditions: Consequence of phenotypic dimensional reduction

    Sato, T. U., Furusawa, C. & Kaneko, Kunihiko, 11 Dec 2023, In: Physical Review Research. 5, 4, 14 p., 043222.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    The Precipitation Characteristics of Mesoscale Convective Systems Over Europe

    Da Silva, N. A. & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Journal of Geophysical Research: Atmospheres. 128, 23, 20 p., e2023JD039045.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    The Role of Passive Cloud Volumes in the Transition From Shallow to Deep Atmospheric Convection

    Vraciu, C. V., Kruse, Irene Livia & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Geophysical Research Letters. 50, 23, 9 p., e2023GL105996.

    Research output: Contribution to journalLetterResearchpeer-review

  38. Published

    Thermodynamics of interacting systems: The role of the topology and collective effects

    Mamede, I. N., Proesmans, Karel Josef A & Fiore, C. E., 22 Dec 2023, In: Physical Review Research. 5, 4, 12 p., 043278.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Evolutionary shaping of low-dimensional path facilitates robust and plastic switching between phenotypes

    Sakata, A. & Kaneko, Kunihiko, 26 Dec 2023, In: Physical Review Research. 5, 4, 19 p., 043296.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. 2024
  41. Published

    A Thermoplasmonic Approach for Investigating Plasma Membrane Repair in Living Cells and Model Membranes

    Danielsen, Helena Maria Dávidsdóttir, Arastoo, M. R., Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 2024, In: Journal of Visualized Experiments. 203, 21 p., e65776.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Alveolar cytokines and interferon autoantibodies in COVID-19 ARDS

    Jonassen, T. B., Jørgensen, S. E., Mitchell, N. H., Mogensen, T. H., Berg, Ronan Martin Griffin, Ronit, A. & Plovsing, Ronni Thermann Reitz, 2024, In: Frontiers in Immunology. 15, 9 p., 1353012.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Chasing the Storms: A Simulation and Observation-Based Exploration of Mesoscale Convective Systems and Cold Pools, from the Midlatitudes to the Tropics

    Kruse, Irene Livia, 2024, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 162 p.

    Research output: Book/ReportPh.D. thesisResearch

  44. Published

    Development of a Deep Learning Approach for the Segmentation of Convective Cold Pools in Satellite-Observable Data

    Höller, Jannik, 2024, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/ReportPh.D. thesisResearch

  45. Published

    Simple bacterial growth model for the formation of spontaneous and triggered dormant subpopulations

    Svenningsen, Mikkel Skjoldan & Mitarai, Namiko, 2024, In: Physical Review Research. 6, 3, 033072.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms

    Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    The dynamics of phage predation on a microcolony

    Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Biological Applications of Thermoplasmonics

    Thusgaard Ruhoff, Victoria, Arastoo, Mohammadreza, Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 6 Jan 2024, In: Nano Letters. 24, 3, p. 777-789 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Mesoscale simulation of biomembranes with FreeDTS

    Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    U‐Net Segmentation for the Detection of Convective Cold Pools From Cloud and Rainfall Fields

    Höller, Jannik, Fiévet, R., Engelbrecht, E. & Härter, Jan Olaf Mirko, 16 Jan 2024, In: Journal of Geophysical Research: Atmospheres. 129, 1, 16 p., e2023JD040126.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Spontaneous self-constraint in active nematic flows

    Head, L. C., Doré, C., Keogh, R. R., Bonn, Lasse Frederik, Negro, G., Marenduzzo, D., Doostmohammadi, Amin, Thijssen, Kristian, López-león, T. & Shendruk, T. N., 18 Jan 2024, In: Nature Physics. 20, 3, p. 492-500 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Genetic mixing and demixing on expanding spherical frontiers

    Garcia Vazquez, Alba, Mitarai, Namiko & Jauffred, Liselotte, 22 Jan 2024, In: ISME communications. 4, 1, 12 p., ycae009.

    Research output: Contribution to journalJournal articleResearchpeer-review