Biocomplexity

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  1. 2012
  2. Published

    Large-Scale Orientation Dependent Heating from a Single Irradiated Gold Nanorod

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 2012, In: Nano Letters. 12, 8, p. 3954-3960 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Low frequency sound propagation in lipid memembranes

    Mosgaard, L. D., Heimburg, Thomas Rainer & Jackson, Andrew D., 2012, Advances in Planar Lipid Bilayers and Liposomes. Elsevier, Vol. 16. p. 51-74 24 p. (Advances in Planar Lipid Bilayers and Liposomes).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  4. Published

    Multiple Roles of Heparin in the Aggregation of p25 alpha

    Nielsen, S. B., Yde, Pernille, Giehm, L., Sundbye, S., Christiansen, G., Mathiesen, Joachim, Jensen, Mogens Høgh, Jensen, P. H. & Otzen, D. E., 2012, In: Journal of Molecular Biology. 421, 4-5, Part 2, p. 601-615

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Organic-inorganic nanocomposite gels as an in situ gelation biomaterial for injectable accommodative intraocular lens

    Annaka, M., Mortensen, Kell, Matsuura, T., Ito, M., Nochioka, K. & Ogata, N., 2012, In: Soft Matter. 8, 27, p. 7185-7196 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Physics of non-equilibrium membranes

    Feld, K. E., 2012, Biophysics-Membranes: Faculty of Science, University of Copenhagen. 134 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Soliton collision in biomembranes and nerves - A stability study.

    Appali, R., Lautrup, B. E., Heimburg, Thomas Rainer & van Rienen, U., 2012, In: Journal of Mathematics in Industry. 16, p. 205-212

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    mRNA pseudoknot structures can act as ribosomal roadblocks

    Hansen, J. T., Oddershede, L. B. & Sørensen, Michael Askvad, 2012, In: Nucleic Acids Research. 40, 1, p. 303-313 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Nested feedback loops in gene regulation

    Mengel, A. B., Krishna, S., Jensen, Mogens Høgh & Trusina, Ala, 1 Jan 2012, In: Physica A: Statistical Mechanics and its Applications. 391, 1-2, p. 100-106

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Fluid dynamics of dilatant fluid

    Nakanishi, H., Nagahiro, S. & Mitarai, Namiko, 12 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, p. 011401 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Segregation in water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 13 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, Part 2, p. 016309 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Protein Localization with Flexible DNA or RNA

    Bernhardsson, P. J. S., Mitarai, Namiko & Sneppen, Kim, 10 Feb 2012, In: PLoS.ONE.. 7, 2, p. e29218

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Equilibrium Strategy and Population-Size Effects in Lowest Unique Bid Auctions

    Pigolotti, S., Bernhardsson, P. J. S., Juul, J. S., Galster, G. & Vivo, P., 22 Feb 2012, In: Physical Review Letters. 108, 8, p. 088701 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Correction to; Why Do Phage Play Dice? (vol 83, pg 11416, 2009)

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 1 Mar 2012, In: Journal of Virology. 86, 5, p. 22898-2898 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  15. Published

    Population Genetics in Compressible Flows

    Pigolotti, S., Benzi, R., Jensen, Mogens Høgh & Nelson, D. R., 23 Mar 2012, In: Physical Review Letters. 108, 12, p. 128102 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Diffusion inside living human cells

    Leijnse, Natascha, Jeon, J. -., Loft, Steffen, Metzler, R. & Oddershede, L. B., 1 Apr 2012, In: European Physical Journal. Special Topics. 204, 1, p. 75-84 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Heat flow in chains driven by thermal noise

    Fogedby, H. C. & Imparato, A., 5 Apr 2012, In: Journal of Statistical Mechanics: Theory and Experiment. 2012, p. P04005

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Conditional Cooperativity in Toxin-Antitoxin Regulation Prevents Random Toxin Activation and Promotes Fast Translational Recovery

    Cataudella, I., Trusina, Ala, Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 11 Apr 2012, In: Nucleic Acids Research. 40, 14, p. 6424-6434

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Population dynamics in compressible flows

    Benzi, R., Jensen, Mogens Høgh, Nelson, D. R., Perlekar, P., Pigolotti, S. & Toschi, F., 17 Apr 2012, In: European Physical Journal. Special Topics. 204, 1, p. 57-74

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Fragile DNA Repair Mechanism Reduces Ageing in Multicellular Model

    Bendtsen, K. M., Juul, J. S. & Trusina, Ala, 2 May 2012, In: P L o S One. 7, 5, p. e36018

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Information spreading and development of cultural centers

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 18 May 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 85, 5, p. 056116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Fluctuation-dissipation relations under Levy noises

    Dybiec, B. M., Parrondo, J. M. R. & Gudowska-Nowak, E., 1 Jun 2012, In: EPL. 98, 5, p. 50006

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Inducing phase-locking and chaos in cellular oscillators by modulating the driving stimuli

    Jensen, Mogens Høgh & Krishna, S., 4 Jun 2012, In: FEBS Letters. 586, 11, p. 1664-1668

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Formation of martian araneiforms by gas-driven erosion of granular material

    de Villiers, S., Nermoen, A., Jamtveit, B., Mathiesen, Joachim, Meakin, P. & Werner, S. C., 2 Jul 2012, In: Geophysical Research Letters. 39, p. L13204 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Emergence of diversity in a model ecosystem

    Mitarai, Namiko, Mathiesen, Joachim & Sneppen, Kim, 30 Jul 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 86, 1, p. 011929 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12828-33 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Science of the United States of America. 109, 31, p. 12828-12833

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus

    Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress

    Lerner, A. G., Upton, J., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, Ala, 8 Aug 2012, In: Cell Metabolism. 16, 2, p. 250-264 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Compaction of porous rock by dissolution on discrete stylolites: A one-dimensional model

    Angheluta, L., Mathiesen, Joachim & Aharonov, E., 10 Aug 2012, In: Journal of Geophysical Research: Biogeosciences. 117, p. B08203 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Switching between oscillations and homeostasis in competing negative and positive feedback motifs

    Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Multistability with a Metastable Mixed State

    Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    The Capacitance and Electromechanical Coupling of Lipid Membranes Close to Transitions: The Effect of Electrostriction

    Heimburg, Thomas Rainer, 5 Sep 2012, In: Biophysical Journal. 103, 5, p. 918-929

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Limit-cycle oscillations and stable patterns in repressor lattices

    Chakraborty, S., Jensen, Mogens Høgh, Krishna, S., Mengel, A. B., Pigolotti, S., Sekara, V. & Semsey, S., 7 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, p. 031905 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Spreading of multiple epidemics with cross immunization

    Uekermann, F. & Sneppen, Kim, 13 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, Part 2, p. 036108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Axelrod model: accepting or discussing

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 1 Oct 2012, In: European Physical Journal B. Condensed Matter and Complex Systems. 85, 10, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Genome-Wide Screening of Genes Regulated by DNA Methylation in Colon Cancer Development

    Spisak, S., Kalmar, A., Galamb, O., Wichmann, B., Sipos, F., Péterfia, B., Csabai, I., Kovalszky, I., Semsey, S., Tulssay, Z. & Molnár, B., 1 Oct 2012, In: P L o S One. 7, 10, p. e46215

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Photothermal heating of optically trapped gold nanoparticles quantified using controlled vesicle cargo release: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA )

    Kyrsting, A. H., Bendix, Poul Martin & Oddershede, L. B., 1 Oct 2012, In: Proceedings of SPIE. 8458, p. 84580X

    Research output: Contribution to journal › Conference article › Research › peer-review

  40. Published

    Measurements of extreme orientation-dependent temperature increase around an irradiated gold nanorod: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA)

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 10 Oct 2012, In: Proceedings of SPIE. 8458, p. 84581R

    Research output: Contribution to journal › Conference article › Research › peer-review

  41. Published

    Communication dynamics in finite capacity social networks

    Härter, Jan Olaf Mirko, Jamtveit, B. & Mathiesen, Joachim, 15 Oct 2012, In: Physical Review Letters. 109, 16, p. 168701 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Two dimensional bias correction of temperature and precipitation copulas in climate models

    Piani, C. & Härter, Jan Olaf Mirko, 16 Oct 2012, In: Geophysical Research Letters. 39, p. L20401

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Force probing of individual molecules inside the living cell is now a reality

    Oddershede, L. B., 17 Oct 2012, In: Nature Chemical Biology. 8, 11, p. 879-886 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Models of epigenetics: BI-   and multi-stability in biological systems

    Alsing, A., 1 Nov 2012, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression

    Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Effects of Growth and Mutation on Pattern Formation in Tissues

    Mengel, A. B., Krishna, S., Chakraborty, S., Pigolotti, S., Sekara, V., Semsey, S. & Jensen, Mogens Høgh, 9 Nov 2012, In: P L o S One. 7, 11, p. e48772

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Modular networks of word correlations on Twitter

    Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Validation and Analysis of Forward Osmosis CFD Model in Complex 3D Geometries

    Gruber, M. F., Johnson, C. J., Tang, C. Y., Jensen, Mogens Høgh, Yde, L. & Helix-Nielsen, C., 9 Nov 2012, In: Membranes. 2, 4, p. 764-782

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    AXELROD MODEL WITH EXTENDED CONSERVATIVENESS

    Dybiec, B. M., 1 Dec 2012, In: International Journal of Modern Physics C. 23, 12, p. 1250086 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Acyl-homoserine lactone-dependent eavesdropping promotes competition in a laboratory co-culture mode

    Chandler, J. R., Mittler, J. E., Greenberg, E. P. & Heilmann, Silja, 1 Dec 2012, In: ISME Journal. 6, 12, p. 2219-2228 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Circuit architecture explains functional similarity of bacterial heat shock responses

    Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003

    Research output: Contribution to journal › Journal article › Research › peer-review

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