Biocomplexity

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  1. Published

    Melting transitions in biomembranes

    Muzic, T., Tounsi, F., Madsen, S. B., Pollakowski, D., Konrad, M. & Heimburg, Thomas Rainer, 26 Sep 2019, In: B B A - Biomembranes. 1861, 11, 11 p., 183026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Membrane Curvature Regulates the Localization of G Protein Coupled Receptors and Ras Isoforms

    Stamou, Dimitrios, Rosholm, K. R., Damalas, A., Hatzakis, Nikos, Wirth, V. F., Martinez, Karen Laurence, Leijnse, Natascha, Oddershede, L. B., Bendix, Poul Martin & Pedersen, S. L., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 95a-96a

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Membrane adhesion and phase behavior: I worked with adhesion of membranes to substrates using advances quantitative microscopy techniques. Also, I studied phase behavior of small unilamellar lipid vesicles with respect to their curvature

    Bendix, Poul Martin, 2015, København, Danmark

    Research output: Other contribution › Research

  4. Published

    Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells

    Rosholm, K. R., Leijnse, Natascha, Mantsiou, A., Tkach, Vadym, Pedersen, S. L., Wirth, V. F., Oddershede, L. B., Jensen, Knud Jørgen, Martinez, Karen Laurence, Hatzakis, Nikos, Bendix, Poul Martin, Callan-Jones, A. & Stamou, Dimitrios, 8 May 2017, In: Nature Chemical Biology. 13, 7, p. 724-729

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Membrane dynamics

    Bendix, Poul Martin, 2015

    Research output: Other contribution › Research

  6. Published

    Membrane fusion

    Bendix, Poul Martin, 2015, California, USA

    Research output: Other contribution › Research

  7. Published

    Membrane protein dynamics studied with optical and thermoplasmonic methods in complex and simple membranes

    Moreno Pescador, Guillermo Sergio, 2019, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 163 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Memory effects, arches and polar defect ordering at the cross-over from wet to dry active nematics

    Nejad, M. R., Doostmohammadi, Amin & Yeomans, J. M., 7 Mar 2021, In: Soft Matter. 17, 9, p. 2500-2511 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Mesoscale modelling of polymer aggregate digestion

    Novev, Yavor Kirilov, Doostmohammadi, Amin, Zöttl, A. & Yeomans, J. M., 1 Nov 2020, In: Current Research in Food Science. 3, p. 122-133 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Mesoscale simulation of biomembranes with FreeDTS

    Pezeshkian, Weria & Ipsen, J. H., 16 Jan 2024, In: Nature Communications. 15, 1, 10 p., 548.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Metastable phase characterization in ion implanted and rapidly solidified aluminium-based alloys

    Li, Q., Johnson, Erik, Johansen, A., Yu, L. D., Steenstrup, S., Sarholt-Kristensen, L. & Progrebnyakov, A., 1991, In: Materials Science & Engineering: A. A 134, p. 1170-74

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Methods in Acoustic Chaos

    Ellegaard, Clive Sigurd & Schaadt, K. E., 21 Jul 2001, Proceedings of the Fifth Experimantal Chaos Conference. World Scientific, p. 325-331

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  13. Published

    Microenvironment driven invasion: a multiscale multimodel investigation

    Anderson, A. R. A., Rejniak, K. A., Gerlee, P. D. M. & Quaranta, V., 2009, In: Journal of Mathematical Biology. 58, 4-5, p. 579-624 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda

    Avlund, M., Dodd, I. B., Sneppen, Kim & Krishna, S., 11 Dec 2009, In: Journal of Molecular Biology. 394, 4, p. 681-693

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

    Avlund, M., Krishna, S., Semsey, S., Dodd, I. B. & Sneppen, Kim, 20 Dec 2010, In: PLoS ONE. 5, 12, p. 0015037 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Minimizing Late Effects for Patients With Mediastinal Hodgkin Lymphoma: Deep Inspiration Breath-Hold, IMRT, or Both?

    Aznar, M. C., Maraldo, M. V., Schut, D. A., Lundemann, M., Brodin, N. P., Vogelius, Ivan R. , Berthelsen, A. K., Specht, Lena & Petersen, P. M., 1 May 2015, In: International Journal of Radiation Oncology, Biology, Physics. 92, 1, p. 169-174

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Minimum action method for the Kardar-Parisi-Zhang equation

    Fogedby, H. C. & Ren, W., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 4, Part 1, p. 041116

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Mismatch repair at stop codons is directed independent of GATC methylation on the Escherichia coli chromosome

    Sneppen, Kim & Semsey, S., 5 Dec 2014, In: Scientific Reports. 4, 7436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Missing levels in acoustic resonators

    Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, Clive Sigurd, 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Mode locking of a driven Bose-Einstein condensate

    Nicolin, A., Carretero-González, R. & Jensen, Mogens Høgh, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Model Study of the Pressure Build-Up during Subcutaneous Injection

    Thomsen, M., Hernandez Garcia, A., Mathiesen, Joachim, Poulsen, Mette Homann, Sørensen, D., Tarnow, L. & Feidenhans'l, Robert Krarup, 14 Aug 2014, In: PLoS ONE. 9, 8, e104054.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Model to Link Cell Shape and Polarity with Organogenesis

    Nielsen, Bjarke Frost, Nissen, Silas Boye, Sneppen, Kim, Mathiesen, Joachim & Trusina, Ala, 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans

    Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Modeling freedom from progression for standard-risk medulloblastoma: a mathematical tumor control model with multiple modes of failure

    Brodin, N. P., Vogelius, I. R., Bjørk-Eriksson, T. & Munck af Rosenschöld, P. M., 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. 422-429

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability

    Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

    Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Modeling positioning uncertainties of prostate cancer external beam radiation therapy using pre-treatment data

    Munck af Rosenschöld, P. M., Desai, N. B., Hun, J., Apte, A., Hunt, M., Kalikstein, A., Mechalakos, J., Happersett, L., Deasy, J. O. & Zelefsky, M. J., 1 Feb 2014, In: Radiotherapy & Oncology. 110, 2, p. 251-255

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Modeling rises and falls in money addicted social hierarchies

    Dybiec, B., Mitarai, Namiko & Sneppen, Kim, 2014, In: Physica Scripta. 89, 8, 085002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Modeling slow-processing of toxin messenger RNAs in type-I toxin-antitoxin systems: post-segregational killing and noise filtering

    Himeoka, Y. & Mitarai, Namiko, Mar 2019, In: Physical Biology. 16, 2, 026001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Modeling spatiotemporal dynamics of DNA methylation

    Lövkvist, Cecilia, 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Modeling the NF-kappa B mediated inflammatory response predicts cytokine waves in tissue

    Yde, Pernille, Mengel, A. B., Jensen, Mogens Høgh, Krishna, S. & Trusina, Ala, 19 Jul 2011, In: BMC Systems Biology. 5, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Modeling the two-hybrid detector: Experimental bias on protien interaction networks

    Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Modelling evolutionary cell behaviour using neural networks: application to tumour growth

    Gerlee, P. D. M. & Anderson, A. R. A., 2009, In: BioSystems. 95, 2, p. 166-174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Modelling the influence of metabolite diffusion on non-starter lactic acid bacteria growth in ripening Cheddar cheese

    Czárán, T., Rattray, F. P., Møller, C. O. D. A. & Christensen, B. B., 2018, In: International Dairy Journal. 80, p. 35-45 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Modelling transcriptional interference and DNA looping in gene regulation

    Dodd, I. B., Shearwin, K. & Sneppen, Kim, 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Modelling value bubbles in an attention based economy

    Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Models of epigenetics: BI-   and multi-stability in biological systems

    Alsing, A., 1 Nov 2012, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  40. Published

    Models of life: epigenetics, diversity and cycles

    Sneppen, Kim, 1 Apr 2017, In: Reports on Progress in Physics. 80, 4, 042601.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Models of life: Dynamics and regulation in biological systems

    Sneppen, Kim, 5 Oct 2014, Cambridge University Press ed. Cambridge. 342 p.

    Research output: Book/Report › Book › Research › peer-review

  42. Published

    Models of low data stochastic time series in Cell dynamics and Covid-19

    Martiny, E. S., 2023, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 74 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Moderate stem-cell telomere shortening rate postpones cancer onset in a stochastic model

    Holbek, S., Bendtsen, K. M. & Juul, J. S., 21 Oct 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 88, 4, p. 1-7 7 p., 042706.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Modular networks of word correlations on Twitter

    Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Monte Carlo Methods Development and Applications in Conformational Sampling of Proteins

    Tian, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  46. Published

    Morphological Instabilities in a growing Yeast Colony: Experiment and Theory

    Sams, T., Jensen, Mogens Høgh, Sneppen, Kim, Christensen, B., Ellegaard, Clive Sigurd & Thrane, U., 14 Jul 1997, In: Physical Review Letters. 79, 2, p. 313-316

    Research output: Contribution to journal › Journal article › Research

  47. Published

    Morphological instabilities of stressed and reactive geological interfaces

    Angheluta, L., Mathiesen, Joachim, Misbah, C. & Renard, F., 24 Jun 2010, In: Journal of Geophysical Research: Biogeosciences. 115, p. B06406 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Motility mediates satellite formation in confined biofilms

    Cordero, Mireia, Mitarai, Namiko & Jauffred, Liselotte, 17 Aug 2023, In: ISME Journal. 17, p. 1819-1827 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Motion management during IMAT treatment of mobile lung tumors-A comparison of MLC tracking and gated delivery

    Falk, M., Pommer, T., Keall, P., Korreman, S., Persson, Gitte F., Poulsen, P. & Munck af Rosenschöld, P. M., 1 Oct 2014, In: Medical Physics. 41, 10, 101707.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model

    Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.

    Research output: Contribution to journal › Journal article › Research › peer-review

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