Biocomplexity

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  1. 2008
  2. Published

    Quantitative optical trapping of single gold nanorods

    Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

    Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Rationalizing translation attenuation in the network architecture of the unfolded protein response

    Trusina, Ala, Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Translation attenuation mechanism in unfolded protein response

    Trusina, Ala, Papa, F. & Tang, C., 1 Dec 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (eds.). p. 83-90 8 p. (NATO Science for Peace and Security Series B: Physics and Biophysics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. 2007
  8. Published

    Cellers nano-mekanik

    Berg-Sørensen, K., Fisher, M., Bendix, Poul Martin & Oddershede, L. B., 2007, In: Kvant. 2007, 1, p. 4-6 3 p.

    Research output: Contribution to journal › Journal article › Communication

  9. Published

    Theoretical analysis of epigenetic cell memory by nucleosome modification

    Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Modelling transcriptional interference and DNA looping in gene regulation

    Dodd, I. B., Shearwin, K. & Sneppen, Kim, 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Melting of single lipid components in binary lipid mixtures: A comparison between FTIR spectroscopy, DSC and Monte Carlo simulations

    Fidorra, M., Heimburg, Thomas Rainer & Seeger, H. M., 2007, In: arXiv.org: Physics. arXiv:0712.0064, 12 p.

    Research output: Contribution to journal › Journal article › Research

  12. Published

    Pores in artificial membranes composed of binary lipid mixtures

    Fidorra, M., Winterhalter, M., Bagatolli, L. A. & Heimburg, Thomas Rainer, 2007, In: Biophysical Journal. p. 610A-610A

    Research output: Contribution to journal › Conference article › Research › peer-review

  13. Published

    Calibration of trapping force and response function of optical tweezers in viscoelastic media

    Fischer, M. & Berg-Sørensen, K., 2007, In: Journal of Optics A: Pure and Applied Optics (Print Edition). 9, 8, Sp. Iss. SI, p. S239-S250

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Pulses and chaos: dynamical response in a simple genetic

    Fonslet, J., Rud-Petersen, K., Krishna, S. & Jensen, Mogens Høgh, 2007, In: International Journal of Modern Physics B. 21, 23-24, p. 4083-4090

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting.

    Hansen, T. M., Reihani, S. N. S., Oddershede, L. B. & Sørensen, Michael Askvad, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 14, p. 5830-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Frustration driven stock market dynamics: Leverage effect and asymmetry

    Heden Ahlgren, P. T., Jensen, Mogens Høgh, Simonsen, I., Donangelo, R. & Sneppen, Kim, 2007, In: Physica A: Statistical Mechanics and its Applications. 383, 1, p. 1-4 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Combinatorics of feedback in cellular uptake and metabolism of small molecules

    Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819

    Research output: Contribution to journal › Conference article › Research › peer-review

  18. Published

    UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model

    Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Spreading out of perturbations in reversible reaction networks

    Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Efficient degradation and expression prioritization with small RANs

    Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress

    Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Mutational analysis of the activator of late transcription, alt, in the lactococcal bacteriophage TP901-1

    Pedersen, M. & Hammer, K., 27 Oct 2007, In: Archives of Virology. 152, 2, p. 305-320 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Network formation of DMPG dispersions studied by light scattering, SANS, SAXS and calorimetry

    Preu, J., Gutberiet, T. & Heimburg, Thomas Rainer, 2007, In: Chemistry and Physics of Lipids. Suppl. S, p. S40-S40

    Research output: Contribution to journal › Conference article › Research › peer-review

  24. Published

    Extending the lateral trapping force of optical tweezers - art. no. 664420

    Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2007, PROCEEDINGS OF THE SOCIETY OF PHOTO-OPTICAL INSTRUMENTATION ENGINEERS: OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION IV. SPIE - International Society for Optical Engineering, Vol. 6644. p. 64420-64420

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Networks and our limited information horizon

    Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Signal integration in the galactose network of Escherichia coli

    Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Fear and its implications for stock markets

    Simonsen, I., Ahlgren, P. H., Jensen, Mogens Høgh, Danangelo, R. & Sneppen, Kim, 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 2, p. 153-158

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A universal power law and proportionate change process characterize the evolution of metabolic networks

    Singh, S., Samal, A., Giri, V. & Krishna, S., 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 1, p. 75-80

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Modeling the two-hybrid detector: Experimental bias on protien interaction networks

    Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. 2006
  31. Published

    Degree landscapes in scale-free networks

    Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, Kim & Trusina, Ala, Sep 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. K. & Berg-Sørensen, K., 15 Oct 2006, In: Computer Physics Communications. 174, 8, p. 572-573

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Sørensen, K. B., 2006, In: Computer Physics Communications. 175, 18, p. 572-573 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    tweezercalib 2.0: faster version of Matlab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Berg-Sørensen, K., 2006, In: Computer Physics Communications. 174, 6, p. 518-520 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Longevity of orders in related to the longevity of their constituent genera rather then genus richness

    Bornholdt, S., Sneppen, Kim & Westphal, H., 2006, In: Theory in Biosciences. 128, 2, p. 75-83 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Broad distribution of stick-slip events in slowly sheared granular media: Table-top production of a Gutenberg-Richter-like distribution

    Bretz, M., Zaretzki, R., Field, S., Mitarai, Namiko & Nori, F., 2 Jun 2006, In: EPL. 74, 6, p. 1116-1122

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Quantitative approach to small-scale nonequilibrium systems

    Dreyer, J. K., Berg-Sørensen, K. & Oddershede, L., 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 73, 5 Pt 1, p. 051110

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Diffusion, fragmentation and merging process in ice crystals, alpha helices and other systems

    Ferkinghoff-Borg, J., Jensen, Mogens Høgh, Olesen, Poul & Mathiesen, Joachim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 61-70

    Research output: Contribution to journal › Conference article › Research › peer-review

  39. Published

    Survey of scaling surfaces

    Hansen, A. & Mathiesen, Joachim, 5 Oct 2006, Modelling Critical and Catastrophic Phenomena in Geoscience: A Statistical Physics Approach. Springer, Vol. 705. p. 93-110 18 p. (Lecture Notes in Physics, Vol. 705).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  40. Published

    Combining confocal microscopy with precise force-scope optical tweezers

    Hansen, T. M., Seyyed Reihani, S. N. & Oddershede, L. B., 2006, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. p. 163-173

    Research output: Contribution to journal › Conference article › Research

  41. Published

    Analytical approach to continuous and intermittent bottleneck flows

    Helbing, D., Johansson, A., Mathiesen, Joachim, Jensen, Mogens Høgh & Hansen, A. C., 2006, In: Physical Review Letters. 97, 16, p. 168001 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Optimal investment horizons for stocks and markets

    Johansen, A., Simonsen, I. & Jensen, Mogens Høgh, 2006, In: Physica A: Statistical Mechanics and its Applications. 1, p. 64-67

    Research output: Contribution to journal › Conference article › Research › peer-review

  43. Published

    Structure and function of negative feedback loops at the interface of genetic and metabolic networks

    Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Response varibility in balanced cortical networks

    Lerchner..[et al.], A., Ursta, C. & Hertz, John, 2006, In: Neural Computation. 18, 3, p. 634-659

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Wet granular materials

    Mitarai, Namiko & Nori, F., 30 Jun 2006, In: Advances in Physics. 55, 1-2, p. 1-45 45 p.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Network models of phage-bacteria coevolution

    Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Low degree metabolites explain essential reactions and enhance modularity in biological networks

    Samal...[et al.], A. & Krishna, S., 2006, In: BMC Bioinformatics. 7, 118

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A communication perspective on network topologies

    Sneppen, Kim & Rosvall, M., 2006, In: Progress of Theoretical Physics. Supplement. p. 103-118

    Research output: Contribution to journal › Conference article › Research › peer-review

  49. Published

    Structure and communication in complex networks

    Sneppen, Kim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 1-28

    Research output: Contribution to journal › Conference article › Research › peer-review

  50. Published

    Functional alignment of regulatory networks: a study of temperate phages

    Trusina, Ala, Sneppen, Kim, Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, In: PLoS Computational Biology. 1, 7, p. 599-603

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. 2005
  52. Published

    Void formation and roughening in slow fracture

    Afek, I., Bouchbinder, E., Katzav, E., Mathiesen, Joachim & Procaccia, I., 1 Jan 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 71, 6, 066127.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    SPES4-pi: installation for exclusive study of nuclear reactions

    Alkhazov, GD., Astashin, VV., Atamanchuk, AG., Augustyniak, W., Bachelier, D., Baublis, VV., Boivin, M., Boyard, JL., Clavelin, JF., Courtat, P., Denoit, M., Douet, R., Ellegaard, C., Farhi, L., Gaarde, C., Gacougnolle, R., Gerzenstein, VY., Golovtsov, VL., Golubev, VV., Hennino, T. & 31 others, Jourdain, J., Khanzadeev, A., Komkov, B., Kravtsov, A., Kudin, L., Kunne, R., Larsen, J., Lebon, S., Malinina, L., Maroni, A., Martin, J., Morsch, H., Mylnikov, V., Orischin, E., Osterlund, M., Poux, V., Prokofiev, A., Radvanyi, P., Ramstein, B., Razmyslovich, B., Roy-Stephan, M., Samsonov, V., Skowron, R., Smirnov, I., Strokovsky, E., Tkach, I., Vikhrov, V., Volkov, S., Vorobyov, A., Zhdanov, A. & Zupranski, P., 11 Oct 2005, In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 551, 2-3, p. 290-311

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Expanding the optical trapping range of gold nanoparticles

    Bendix, Poul Martin, Bhatia, V. K., Harrit, N. & Oddershede, L. B., 2005, In: Nano Letters. 5, 10, p. 1937-1942 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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