Biocomplexity

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  1. Published

    The COVID-19 pandemic: key considerations for the epidemic and its control

    Ørskov, S., Nielsen, Bjarke Frost, Føns, S., Sneppen, Kim & Simonsen, L., Jul 2021, In: APMIS. 129, 7, p. 408-420 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    High Pressure Studies up to 50 GPa of CuO

    Åsbrink, S., Gerward, L., Olsen, J. S. & Steenstrup, S., 1992, In: High Pressure Research. 10, p. 515-521

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Formation of martian araneiforms by gas-driven erosion of granular material

    de Villiers, S., Nermoen, A., Jamtveit, B., Mathiesen, Joachim, Meakin, P. & Werner, S. C., 2 Jul 2012, In: Geophysical Research Letters. 39, p. L13204 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Influence of volumetric modulated arc therapy and FET-PET scanning on treatment outcomes for glioblastoma patients

    af Rosenschold, P. M., Law, Ian, Engelholm, S. A., Muhic, A., Lundemann, M. J., Roed, H., Grunnet, K. & Poulsen, H. S., Jan 2019, In: Radiotherapy and Oncology. 130, p. 149-155

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Sall4 and Myocd Empower Direct Cardiac Reprogramming From Adult Cardiac Fibroblasts After Injury

    Zhao, H., Zhang, Y., sgk681, sgk681, Sun, Q., Yang, C., Wang, H., Yang, J., Yang, Y., Yang, X., Liu, Y. & Zhao, Y., 26 Feb 2021, In: Frontiers in Cell and Developmental Biology. 9, 13 p., 608367.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Interferometric detection of single gold nanoparticles calibrated against TEM size distributions

    Zhang, L., Christensen, S., Bendix, Poul Martin, Bhatia, V. K., Loft, Steffen & Stamou, Dimitrios, 2015, In: Small. 11, 29, p. 3550-3555 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Active inter-cellular forces in collective cell motility

    Zhang, G., Mueller, R., Doostmohammadi, Amin & Yeomans, J. M., 26 Aug 2020, In: Journal of the Royal Society. Interface. 17, 169, 9 p., 20200312.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Maximum Likelihood Reconstruction for Ising Models with Asynchronous Updates

    Zeng, H., Alava, M., Aurell, E., Hertz, John & Roudi, Y., 20 May 2013, In: Physical Review Letters. 110, 21, 210601.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    L-1 regularization for reconstruction of a non-equilibrium Ising model

    Zeng, H. L., Hertz, John & Roudi, Y., 2 Oct 2014, In: Physica Scripta. Topical Issues. 89, 10, 105002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    On polarization in biomembranes

    Zecchi, K. A., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  11. Published

    Non-linear Conductance, Rectification, and Mechanosensitive Channel Formation of Lipid Membranes

    Zecchi, K. A. & Heimburg, Thomas Rainer, 26 Jan 2021, In: Frontiers in Cell and Developmental Biology. 8, 18 p., 592520.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Mechano-capacitive properties of polarized membranes and the application to conductance measurements of lipid membrane patches

    Zecchi, K. A., Mosgaard, L. D. & Heimburg, Thomas Rainer, 1 Jan 2017, In: Journal of Physics: Conference Series. 780, 012001.

    Research output: Contribution to journal › Conference article › Research › peer-review

  13. Published

    RBS analysis of diffusion and evaporation of implanted lead in aluminium

    Yu, L. D., Steenstrup, S., Johansen, A., Johnson, Erik, Sarholt-Kristensen, L. & Bourdelle, K. K., 1992, In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. B64, p. 78-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Analyzing inflammatory response as excitable media

    Yde, Pernille, Jensen, Mogens Høgh & Trusina, Ala, 18 Nov 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 5, Part 1, p. 051913

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Spatial Structures and Regulation in Biological Systems

    Yde, Pernille, 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis

  16. Published

    Modeling the NF-kappa B mediated inflammatory response predicts cytokine waves in tissue

    Yde, Pernille, Mengel, A. B., Jensen, Mogens Høgh, Krishna, S. & Trusina, Ala, 19 Jul 2011, In: BMC Systems Biology. 5, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Chemicals orchestrate reprogramming with hierarchical activation of master transcription factors primed by endogenous Sox17 activation

    Yang, Z., Xu, X., Gu, C., Li, J., Wu, Q., Ye, C., Nielsen, Alexander Valentin, Mao, L., Ye, J., Bai, K., Guo, F., Tang, C. & Zhao, Y., 30 Oct 2020, In: Communications Biology . 3, 1, 10 p., 629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Chemical Pretreatment Activated a Plastic State Amenable to Direct Lineage Reprogramming

    Yang, Z., Xioachan, X., Gu, C., Nielsen, Alexander Valentin, Chen, G., Guo, F., Tang, C. & Zhao, Y., 25 Mar 2022, In: Frontiers in Cell and Developmental Biology. 10, 16 p., 865038.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Universal Transitions between Growth and Dormancy via Intermediate Complex Formation

    Yamagishi, J. F. & Kaneko, Kunihiko, 12 Mar 2024, In: Physical Review Letters. 132, 11, 7 p., 118401.

    Research output: Contribution to journal › Letter › Research › peer-review

  20. Published

    Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

    sgk681, sgk681, Seymour, Philip Allan, Sneppen, Kim, Trusina, Ala, Egeskov-Madsen, A. L. R., Jørgensen, Mette Christine, Jensen, Mogens Høgh & Serup, Palle, 2023, In: Nature Communications. 14, 17 p., 348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Phase-state dependent current fluctuation in pure lipid membranes

    Wunderlich, B., Leirer, C. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4592-4597 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Cancer cells' ability to mechanically adjust to extracellular matrix stiffness correlates with their invasive potential

    Wullkopf, L., West, A. K. V., Leijnse, Natascha, Cox, T. R., Madsen, C. D., Oddershede, L. B. & Erler, Janine, 2018, In: Molecular Biology of the Cell. 29, 20, p. 2378-2385 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations

    Wodzinska, K., Blicher, A. & Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Interweaving categories: Styles, paradigms, and models

    Winther, Rasmus, 1 Dec 2012, In: Studies in History and Philosophy of Science - Part A. 43, 4, p. 628-639

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Observation of Motion-Dependent Nonlinear Dispersion with Narrow-Linewidth Atoms in an Optical Cavity

    Westergaard, P. G., Christensen, B. T. R., Tieri, D., Matin, R., Cooper, J., Holland, M., Ye, J. & Thomsen, Jan Westenkær, 4 Mar 2015, In: Physical Review Letters. 114, 9, 093002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Investigation of cancer cell dynamics during division and migration

    West, A. V., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  27. Published

    Division Induced Dynamics in Non-Invasive and Invasive Breast Cancer

    West, A. V., Wullkopf, L., Christensen, A., Leijnse, Natascha, Tarp, J. M., Mathiesen, Joachim, Erler, Janine & Oddershede, L. B., 3 Feb 2017, In: Biophysical Journal. 112, 3, Supp. 1, p. 123A-123A

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Dynamics of cancerous tissue correlates with invasiveness

    West, A. V., Wullkopf, L., Christensen, A., Leijnse, Natascha, Tarp, J. M., Mathiesen, Joachim, Erler, Janine & Oddershede, L. B., 6 Mar 2017, In: Scientific Reports. 7, 43800.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Reply to "Comment on 'Penetration of Action Potentials During Collision in the Median and Lateral Giant Axons of Invertebrates'"

    Wang, T., Gonzalez-Perez, Alfredo, Budvytyte, R., Jackson, Andrew D. & Heimburg, Thomas Rainer, 24 Apr 2017, In: Physical Review X. 7, 2, 028002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The free energy of biomembrane and nerve excitation and the role of anesthetics

    Wang, T., Muzic, T., Jackson, Andrew D. & Heimburg, Thomas Rainer, 16 Oct 2018, In: Biochimica et Biophysica Acta - Biomembranes. 1860, 10, p. 2145-2153 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Studies on the Action Potential From a Thermodynamic Perspective

    Wang, T., 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  33. Published

    The Role of Passive Cloud Volumes in the Transition From Shallow to Deep Atmospheric Convection

    Vraciu, C. V., Kruse, Irene Livia & Härter, Jan Olaf Mirko, 16 Dec 2023, In: Geophysical Research Letters. 50, 23, 9 p., e2023GL105996.

    Research output: Contribution to journal › Letter › Research › peer-review

  34. Published

    Roadmap for optical tweezers

    Volpe, G., Maragò, O. M., Rubinsztein-Dunlop, H., Pesce, G., Stilgoe, A. B., Volpe, G., Tkachenko, G., Truong, V. G., Chormaic, S. N., Kalantarifard, F., Elahi, P., Käll, M., Callegari, A., Marqués, M. I., Neves, A. A. R., Moreira, W. L., Fontes, A., Cesar, C. L., Saija, R., Saidi, A. & 63 others, Beck, P., Eismann, J. S., Banzer, P., Fernandes, T. F. D., Pedaci, F., Bowen, W. P., Vaippully, R., Lokesh, M., Roy, B., Thalhammer-Thurner, G., Ritsch-Marte, M., García, L. P., Arzola, A. V., Castillo, I. P., Argun, A., Muenker, T. M., Vos, B. E., Betz, T., Cristiani, I., Minzioni, P., Reece, P. J., Wang, F., McGloin, D., Ndukaife, J. C., Quidant, R., Roberts, R. P., Laplane, C., Volz, T., Gordon, R., Hanstorp, D., Marmolejo, J. T., Bruce, G. D., Dholakia, K., Li, T., Brzobohatý, O., Simpson, S. H., Zemánek, P., Ritort, F., Roichman, Y., Bobkova, V., Wittkowski, R., Denz, C., Pavan Kumar, G. V., Foti, A., Donato, M. G., Gucciardi, P. G., Gardini, L., Bianchi, G., Kashchuk, A. V., Capitanio, M., Paterson, L., Jones, P. H., Berg-Sørensen, K., Farhangibarooji, Younes, Oddershede, L. B., Pouladian, P., Preece, D., Adiels, C. B., De Luca, A. C., Magazzù, A., Ciriza, D. B., Iatì, M. A. & Swartzlander, G. A., Apr 2023, In: Journal of Physics-Photonics. 5, 2, 136 p., 022501.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Variations in interpulse interval of double action potentials during propagation in single neurons

    Villagran-Vargas, E., Rodriguez-Sosa, L., Hustert, R., Blicher, A., Laub, K. R. & Heimburg, Thomas Rainer, 2013, In: Synapse. 67, 2, p. 68-78 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling

    Vik, D., Mitarai, Namiko, Wulff, N., Halkier, Barbara Ann & Burow, Meike, 2018, In: Frontiers in Plant Science. 9, 16 p., 550.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Mechanics of cell integration in vivo

    Ventura, Guilherme Bastos, Amiri, A., Thiagarajan, Raghavan, Tolonen, Mari, Doostmohammadi, Amin & Sedzinski, Jakub, 18 Nov 2021, In: bioRxiv. 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Multiciliated cells use filopodia to probe tissue mechanics during epithelial integration in vivo

    Ventura, G., Amiri, A., Thiagarajan, Raghavan, Tolonen, Mari, Doostmohammadi, Amin & Sedzinski, Jakub, 2022, In: Nature Communications. 13, 1, 15 p., 6423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Distinct impacts of polar and nematic self-propulsion on active unjamming

    Venkatesh, V., Mondal, C. & Doostmohammadi, Amin, 2022, In: Journal of Chemical Physics. 157, 16, 11 p., 164901.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Time-dependent Taylor-Aris dispersion of an initial point concentration

    Vedel, S., Hovad, E. & Bruus, H., 2014, In: Journal of Fluid Mechanics. 752, p. 107-122 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response

    Vedel, S., Nunns, H., Košmrlj, A., Semsey, S. & Trusina, Ala, 13 Jul 2016, In: Cell Systems. 3, 2, p. 187-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Synergistic and antagonistic effects of deterministic and stochastic cell-cell variations

    Vedel, S., Košmrlj, A., Nunns, H. & Trusina, Ala, 9 May 2024, In: Physical Review E. 109, 5, 17 p., 054404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Periodic solutions and refractory periods in the soliton theory for nerves and the locust femoral nerve

    Vargas, V., Ludu, A., Hustert, R., Gumrich, P., Jackson, Andrew D. & Heimburg, Thomas Rainer, 1 Jan 2011, In: Biophysical Chemistry. 153, 2-3, p. 159-167 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Instabilities in Sand Ripples

    Van Hecke, M., Ellegaard, Clive Sigurd & Bohr, T., 2001, In: Nature. 410, p. 324

    Research output: Contribution to journal › Comment/debate › Research

  45. Published

    Bekymrede forskere: Politisk styring af offentlige forskningsmidler må ikke underminere grundforskningen

    Vallgårda, Karen Asta Arnfred, Bjørk, R., Dalsgaard, P., Dimke, H., Jauffred, Liselotte, Kropp, K., Laustsen, A. H., Pedersen, B. P. & Sørensen, Thomas Just, 30 Sep 2020, In: Science Report.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  46. Published

    Unge forskere: Vi vil advare mod direkte politisk styring af forskningsfinansiering

    Vallgårda, Karen Asta Arnfred, Bjørk, R., Dalsgaard, P., Dimke, H., Jauffred, Liselotte, Laustsen, A. H., Pedersen, B. P. & Sørensen, Thomas Just, 1 Oct 2020, In: Altinget.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  47. Published

    Unge forskere: Flere øremærkede forskningsmidler truer fri forskning

    Vallgårda, Karen Asta Arnfred, Andersen, P. E., Bjørk, R., Dalsgaard, P., Damgaard, R. B., Dimke, H., Hansen, N. C., Jauffred, Liselotte, Jønsson, Knud Andreas, Kropp, K., Laustsen, A. H., Møller, Niels Martin, Nielsen, Mathias Wullum, Sørensen, Thomas Just & Nielsen, T. K., 11 Feb 2021, In: Altinget. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  48. Published

    Unge forskere: Ph.d.-studerende skal ikke udnyttes som billig arbejdskraft

    Vallgårda, Karen Asta Arnfred, Sørensen, Thomas Just, Jauffred, Liselotte, Danbolt, Mathias, Bjørk, R., Dalsgaard, P., Dimke, H., Niss, K. & Pedersen, B. P., 30 Jan 2020, In: Altinget. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  49. Published

    Unge forskere: Fondsmidler trækker forskningen skæv

    Vallgårda, Karen Asta Arnfred, Jauffred, Liselotte, Sørensen, Thomas Just, Rasmussen, B., Damgaard, R. B., Dalsgaard, P., Dimke, H., Jønsson, Knud Andreas, Kropp, K., Laustsen, A. H., Møller, Niels Martin & Ellersgaard, C. H., 23 Mar 2021, In: Altinget. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  50. Published

    Inden næste epidemi

    Vallgårda, Karen Asta Arnfred, Jauffred, Liselotte, Sørensen, Thomas Just, Engberg-Pedersen, Anders, Bjørk, R., Dimke, H., Dalsgaard, P., Kropp, K., Niss, K. & Pedersen, B. P., 1 May 2020, In: Weekendavisen. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  51. Published

    Unge forskere: Fri forskning er vigtigt – også i krisetider

    Vallgårda, Karen Asta Arnfred, Jauffred, Liselotte, Sørensen, Thomas Just, Møller, Niels Martin, Niss, K., Bjørk, R., Dalsgaard, P., Dimke, H. & Pedersen, B. P., 12 May 2020, In: Altinget. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  52. Published

    Nej, Ane Halsboe-Jørgensen, forskningsmidler skal ikke bruges på erhvervsstøtte

    Vallgårda, Karen Asta Arnfred, Bjørk, R., Dalsgaard, P., Dimke, H., Jauffred, Liselotte, Kropp, K., Laustsen, A. H., Pedersen, B. P. & Sørensen, Thomas Just, 12 Sep 2020, In: Information. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  53. Published

    Vedtag en hjælpepakke til yngre forskere

    Vallgårda, Karen Asta Arnfred, Dalsgaard, P., Dimke, H., Jauffred, Liselotte, Kropp, K., Laustsen, A. H., Pedersen, B. P., Suhr, C. & Sørensen, Thomas Just, 15 Sep 2020, In: Politiken. 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  54. Published

    Unge forskere: Der er behov for en bedre model til at støtte coronaforsinket forskning

    Vallgårda, Karen Asta Arnfred, Andersen, P. E., Jauffred, Liselotte, Sørensen, Thomas Just, Møller, Niels Martin, Jønsson, Knud Andreas, Kristensen, Line Burholt, Bjørk, R., Dalsgaard, P., Dimke, H., Kropp, K., Laustsen, A. H., Nielsen, Mathias Wullum & Rasmussen, Laura Vang, 16 Mar 2021, In: Altinget.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  55. Published

    Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

    Valentin, J., Andreetta, C., Boomsma, Wouter, Bottaro, S., Ferkinghoff-Borg, J., Frellsen, J., Mardia, K. V., Tian, P. & Hamelryck, Thomas Wim, 2014, In: Proteins: Structure, Function, and Bioinformatics. 82, 2, p. 288-299 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Active topological defect absorption by a curvature singularity

    Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 20 Jul 2023, In: Journal of Physics Condensed Matter. 35, 42, 17 p., 425101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Periodic orbits, pair nucleation, and unbinding of active nematic defects on cones

    Vafa, F., Nelson, D. R. & Doostmohammadi, Amin, 7 Jun 2024, In: Physical Review E. 109, 6, 15 p., 064606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    OBSERVATION OF THE PROTON-PAIRING VIBRATION IN CA-48

    VIDEBAEK, F., HANSEN, O., LEVINE, M., Ellegaard, Clive Sigurd, HOATH, S. & NELSON, J., 17 Mar 1986, In: Nuclear Physics A: Nuclear and Hadronic Physics. 451, 1, p. 131-140

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics

    Unterweger, Iris Anne, Klepstad, J., Hannezo, E., Lundegaard, Pia Rengtved, Trusina, Ala & Ober, Elke, 2023, In: PLOS Biology. 21, 10, 30 p., e3002315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Information Spreading in Epidemics and in Communication Networks

    Uekermann, F. P., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  61. Published

    Characterization of phase transitions in a model ecosystem of sessile species

    Uekermann, F., Mathiesen, Joachim & Mitarai, Namiko, 13 Mar 2017, In: Physical Review E. 95, 3, 032409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Exploring the contribution of exposure heterogeneity to the cessation of the 2014 Ebola epidemic

    Uekermann, F., Simonsen, L. & Sneppen, Kim, 1 Feb 2019, In: PLoS ONE. 14, 2, 11 p., e0210638.

    Research output: Contribution to journal › Review › Research › peer-review

  63. Published

    A cross-immunization model for the extinction of old influenza strains

    Uekermann, F. & Sneppen, Kim, 2016, In: Scientific Reports. 6, 8 p., 25907.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Spreading of multiple epidemics with cross immunization

    Uekermann, F. & Sneppen, Kim, 13 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, Part 2, p. 036108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    NETWORK INFERENCE WITH HIDDEN UNITS

    Tyrcha, J. & Hertz, John, 1 Feb 2014, In: Mathematical Biosciences and Engineering. 11, 1, p. 149-165

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    The effect of nonstationarity on models inferred from neural data

    Tyrcha, J., Roudi, Y. & Hertz, John, 1 Mar 2013, In: Journal of Statistical Mechanics: Theory and Experiment. 2013, P03005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Human T cell responses to Japanese encephalitis virus in health and disease

    Turtle, L., Bali, T., Buxton, G., Chib, S., Chan, S., Soni, M., Hussain, M., Isenman, H., Fadnis, P., Venkataswamy, M. M., Satishkumar, V., Lewthwaite, P., Kurioka, A., Krishna, S., Shankar, M. V., Ahmed, R., Begum, A., Ravi, V., Desai, A., Yoksan, S. & 7 others, Fernandez, S., Willberg, C. B., Kløverpris, Henrik Nyhus, Conlon, C., Klenerman, P., Satchidanandam, V. & Solomon, T., 2016, In: Journal of Experimental Medicine.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Polar jets of swimming bacteria condensed by a patterned liquid crystal

    Turiv, T., Koizumi, R., Thijssen, K., Genkin, M. M., Yu, H., Peng, C., Wei, Q., Yeomans, J. M., Aranson, I. S., Doostmohammadi, Amin & Lavrentovich, O. D., 2 Mar 2020, In: Nature Physics. 16, 4, p. 481-487 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Functional alignment of regulatory networks: a study of temperate phages

    Trusina, Ala, Sneppen, Kim, Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, In: PLoS Computational Biology. 1, 7, p. 599-603

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Stress induced telomere shortening: longer life with less mutations?

    Trusina, Ala, 1 Mar 2014, In: B M C Systems Biology. 8, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Translation attenuation mechanism in unfolded protein response

    Trusina, Ala, Papa, F. & Tang, C., 1 Dec 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (eds.). p. 83-90 8 p. (NATO Science for Peace and Security Series B: Physics and Biophysics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  72. Published

    Rationalizing translation attenuation in the network architecture of the unfolded protein response

    Trusina, Ala, Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    The unfolded protein response and translation attenuation: a modelling approach.

    Trusina, Ala & Tang, C., Oct 2010, In: Diabetes, Obesity and Metabolism Online. 12, p. 27-31

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Hierarchy measures in complex networks

    Trusina, Ala, Maslov, S., Minnhagen, P. & Sneppen, Kim, 30 Apr 2004, In: Physical Review Letters. 92, 17, 178702.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Copulas for hydroclimatic analysis: A practice-oriented overview

    Tootoonchi, F., Sadegh, M., Härter, Jan Olaf Mirko, Raty, O., Grabs, T. & Teutschbein, C., Mar 2022, In: Wiley Interdisciplinary Reviews: Water. 9, 2, 28 p., 1579.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Uni- and multivariate bias adjustment methods in Nordic catchments: Complexity and performance in a changing climate br

    Tootoonchi, F., Härter, Jan Olaf Mirko, Todorovic, A., Raty, O., Grabs, T. & Teutschbein, C., 20 Dec 2022, In: Science of the Total Environment. 853, 18 p., 158615.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Modelling value bubbles in an attention based economy

    Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Forging the flow of the quantum mechanical current in quantum dots

    Tighineanu, P., Stobbe, S. & Lodahl, Peter, 2014, Proceedings of the Nonlinear optics and excitation kinetics in semiconductors, Bremen, Germany. Bremen, Germany

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  79. Published

    probing electric and magnetic vacuum fluctuations with quantum dots

    Tighineanu, P., Sørensen, Anders Søndberg, Stobbe, S. & Lodahl, Peter, 2014, Nonlinear quantum optics : Workshop, Leiden, the Netherlands, 2014. Leiden, Netherlands

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  80. Published

    Unraveling the Mesoscopic Character of Quantum Dots in Nanophotonics

    Tighineanu, P., Sørensen, Anders Søndberg, Stobbe, S. & Lodahl, Peter, 19 Jun 2015, In: Physical Review Letters. 114, 24, 247401.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    The dynamics of genetic control in the cell: the good and bad of being late

    Tiana, G. & Jensen, Mogens Høgh, 28 Sep 2013, In: Philosophical Transactions. Series A : Mathematical, physical, and engineering science. 371, 1999; SI, 20120469.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Monte Carlo Methods Development and Applications in Conformational Sampling of Proteins

    Tian, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  84. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    A Monte Carlo study of the early steps of functional amyloid formation

    Tian, P., Lindorff-Larsen, Kresten, Boomsma, Wouter, Jensen, Mogens Høgh & Otzen, D. E., 2016, In: P L o S One. 11, 1, 18 p., e0146096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  88. Published

    Decision Making in Biological Systems

    Tian, C., 2017, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 188 p.

    Research output: Book/Report › Ph.D. thesis

  89. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Bifurcation of transition paths induced by coupled bistable systems

    Tian, C. & Mitarai, Namiko, 7 Jun 2016, In: The Journal of Chemical Physics. 144, 21, 215102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Model Study of the Pressure Build-Up during Subcutaneous Injection

    Thomsen, M., Hernandez Garcia, A., Mathiesen, Joachim, Poulsen, Mette Homann, Sørensen, D., Tarnow, L. & Feidenhans'l, Robert Krarup, 14 Aug 2014, In: PLoS ONE. 9, 8, e104054.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Is a constant low-entropy process at the root of glycolytic oscillations?

    Thoke, H. S., Olsen, L. F., Duelund, L., Stock, R. P., Heimburg, Thomas Rainer & Bagatolli, L. A., Sep 2018, In: Journal of Biological Physics. 44, 3, p. 419-431

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Activity-induced instabilities of brain organoids

    Thijssen, K., Kusters, G. L. A. & Doostmohammadi, Amin, 7 Dec 2021, In: The European Physical Journal E: Soft Matter and Biological Physics. 44, 12, 8 p., 147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Necking and failure of a particulate gel strand: signatures of yielding on different length scales

    Thijssen, Kristian, Liverpool, T. B., Royall, P. C. & Jack, R. L., 2023, In: Soft Matter. 19, 38, p. 7412-7428 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Active nematics with anisotropic friction: the decisive role of the flow aligning parameter

    Thijssen, K., Metselaar, L., Yeomans, J. M. & Doostmohammadi, Amin, 28 Feb 2020, In: Soft Matter. 16, 8, p. 2065-2074 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Binding self-propelled topological defects in active turbulence

    Thijssen, K. & Doostmohammadi, Amin, 13 Oct 2020, In: Physical Review Research. 2, 4, 6 p., 042008.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Measurement of the spin-forbidden decay rate (3s3d)1D2¿(3s3p)3 P2,1 in 24Mg

    Therkildsen, K. T., Jensen, B. B., Ryder, C. P., Malossi, N. & Thomsen, Jan Westenkær, 2009, In: Physical Review A (Atomic, Molecular and Optical Physics). 79, 3, p. 034501 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Quantitative analysis of single particle trajectories: mean maximal excursion method

    Tejedor...[et al.], V., Benichou, O., Voituriez, R. & Oddershede, L. B., 7 Apr 2010, In: Biophysical Journal. 98, 7, p. 1364-1372 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Rotation-limited growth of three-dimensional body-centered-cubic crystals

    Tarp, J. M. & Mathiesen, Joachim, 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 1, 012409.

    Research output: Contribution to journal › Journal article › Research › peer-review

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