Biocomplexity

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  1. 2011
  2. Published

    Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans

    Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.

    Research output: Book/Report › Ph.D. thesis

  3. Published

    Self-assembling drugs: A new therapeutic strategy

    Hassan, N., Ruso, J. M. & Gonzalez-Perez, Alfredo, 3 May 2011, In: Soft Matter. 7, 11, p. 5194-5199 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A bound particle coupled to two thermostats

    Fogedby, H. C. & Imparato, A., 1 May 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, p. P05015

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    How Gaussian competition leads to lumpy or uniform species distributions

    Pigolotti, S., Lopez, C., Hermandez-Garcia, E. & Andersen, K. H., 1 May 2011, In: Theoretical Ecology. 3, 2, p. 89-96 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Use of small angle neutron scattering to study the interaction of angiotensin II with model membranes

    Preu, J., Jaeger, T., Garamus, V. M. & Gutberlet, T., 1 May 2011, In: European Biophysics Journal. 40, 5, p. 687-698

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Zipf's law unzipped

    Baek, S. K., Minnhagen, P. & Bernhardsson, P. J. S., 7 Apr 2011, In: New Journal of Physics. 13, p. 043004

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    High-speed video-based tracking of optically trapped colloids

    Otto, O., Gornall, J. L., Stober, G., Czerwinski, F., Siedel, R. & Keyser, U. F., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044011

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Optimizing active and passive calibration of optical tweezers

    Andersson, M., Czerwinski, F. & Oddershede, L. B., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044020

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Dynamical TAP equations for non-equilibrium Ising spin glasses

    Roudi, Y. & Hertz, John, 31 Mar 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, 3, p. P03031 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Publisher's note: “Dissimilar bouncy walkers” [J. Chem. Phys. 134, 045101 (2011)]

    Lomholt, M. A., Lizana, G. L. & Ambjørnsson, T., 28 Feb 2011, In: Journal of Chemical Physics. 134, 8, p. 088902 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  12. Published

    Shear Thickening Oscillation in a Dilatant Fluid

    Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., Bendix, Poul Martin, Stamou, Dimitrios & Oddershede, L. B., 11 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Heat Profiling of 3D Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., M. Bendix, P., Stamou, Dimitrios & Oddershede, L. B., 9 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Emergence and decline of scientific paradigms

    Bornholdt, S., Jensen, Mogens Høgh & Sneppen, Kim, 2 Feb 2011, In: Physical Review Letters. 106, 5, p. 058701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    TimesSeriesStreaming.VI: LabVIEW program for reliable data streaming of large analog time series

    Czerwinski, F. & Oddershede, L. B., 1 Feb 2011, In: Computer Physics Communications. 182, 2, p. 485-489 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Dissimilar bouncy walkers

    Lomholt, M. A. & Lizana, G. L., 28 Jan 2011, In: Journal of Chemical Physics. 134, 8, p. 045101

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Mean Field Theory for Nonequilibrium Network Reconstruction

    Roudi, Y. & Hertz, John, 28 Jan 2011, In: Physical Review Letters. 106, 4, p. 048701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    In Vivo Anomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules

    Jeon, J., Tejedor, V., Barkai, E., Selhuber-Unkel, C. J. M., Oddershede, L. B., Berg-Sørensen, K. & Metzler, R., 25 Jan 2011, In: Physical Review Letters. 106, 4, p. 048103 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Structural correlations in bacterial metabolic networks

    Bernhardsson, P. J. S., Gerlee, P. D. M. & Lizana, G. L., 20 Jan 2011, In: B M C Evolutionary Biology. 11, p. 20

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Key players in the genetic switch of bacteriophage TP901-1.

    Alsing, A., Pedersen, M., Sneppen, Kim & Hammer, K., 19 Jan 2011, In: Biophysical Journal. 100, 2, p. 313-321 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Biomimetic triblock copolymer membranes: from aqueous solutions to solid supports

    Gonzalez-Perez, Alfredo, Castelletto, V., Hamley, I. W. & Taboada, P., 1 Jan 2011, In: Soft Matter. 7, 3, p. 1129-1138

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Periodic solutions and refractory periods in the soliton theory for nerves and the locust femoral nerve

    Vargas, V., Ludu, A., Hustert, R., Gumrich, P., Jackson, Andrew D. & Heimburg, Thomas Rainer, 1 Jan 2011, In: Biophysical Chemistry. 153, 2-3, p. 159-167 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Self-consistent method for density estimation

    Bernacchia, A. & Pigolotti, S., 1 Jan 2011, In: Journal of The Royal Statistical Society Series B-statistical Methodology. 73, Part 3, p. 407-422

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Direct and indirect effects in the regulation of overlapping promoters

    Bendtsen, K. M., Erdossy, J., Csiszovski, Z., Svenningsen, Sine Lo, Sneppen, Kim, Krishna, S. & Semsey, S., 2011, In: Nucleic Acids Research. 39, 16, p. 6879-6885 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Expanding the optical trapping range of lipid vesicles to the nano-scale

    Bendix, Poul Martin & Oddershede, L. B., 2011, In: Nano Letters. 11, 12, p. 5431–5437 7 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  27. Published

    Fragmentation of fullerenes chapter 26 in Handbook of Nanophysics: Clusters and fullerences

    Albert, V. V., Chancey, R. T., Oddershede, L. B., Harris, F. E. & Sabin, J. R., 2011, CPC Press, Taylor & Francis Group ed. USA. (Handbook of Nanophysics).

    Research output: Book/Report › Book › peer-review

  28. Published

    Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes

    Bang-Berthelsen...[et al.], C. H., Pedersen, L., Flovel, T. & Hagedorn, P., 2011, In: B M C Genomics. 12

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Small-scale nonequilibrium systems

    Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Static and Dynamic Disorder Observed in the Phase Transition Behavior of Individual Small Unilamellar Vesicles

    Stamou, Dimitrios, Bendix, Poul Martin, Wibroe, P. P. & Hatzakis, Nikos, 2011, In: Biophysical Journal. 100, 3 suppl 1, p. 35a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  31. Published

    Symbolic dynamics in genetic oscillation patterns: Chapter in " The Complexity of dynamical systems: a multidisciplinary perspective" p.99-118, eds. Johan Dubbeldam, Kirk Green, Daan Lanstra

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2011, The Complexity of Dynamical systems: a multidisciplinary perspective. Wiley Publishing ed. USA: Wiley-VCH, p. 99-118 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  32. Published

    The Value of Example Solutions in Pharmacy Education: The role of seniority and gender.

    Sandelin, Albin Gustav, Hansen, H. R., Baldursdóttir, S. G., Kristensen, Anders Skov, Bak, Lasse Kristoffer, Christiansen, Frederik Voetmann & Selhuber-Unkel, C. J. M., 2011, In: Pharmacy Education. 11, 1, p. 32-37 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The functional half-life of an mRNA depends on the ribosome spacing in an early coding region

    Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. 2010
  35. Published

    Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

    Avlund, M., Krishna, S., Semsey, S., Dodd, I. B. & Sneppen, Kim, 20 Dec 2010, In: PLoS ONE. 5, 12, p. 0015037 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Critical behavior of polystyrene-cyclohexane

    Mirzaev, S., Kaatze, U. & Heimburg, Thomas Rainer, 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, part 1, p. 061502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Interference of mesoscales in the critical behaviour of polystyrene-cyclohexane: heat capacity and mass density

    Mirzaev, S. Z., Heimburg, Thomas Rainer & Kaatze, U., 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, p. 061502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Timing of gene transcription in the galactose utilization system of Escherichia coli

    Horvath, P., Hunziker, A., Erdossy, J., Krishna, S. & Semsey, S., 3 Dec 2010, In: Journal of Biological Chemistry. 285, 49, p. 38062-38068 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

    Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Role of HU in regulation of gal promoters: chapter 17 in Bacterial chromatin p.395-417, eds: C. Dorman and R.Dame

    Lewis...[et al.], D. E. A., Lee, S. J. & Semsey, S., 1 Dec 2010, Tyskland: Springer Science+Business Media. 22 p.

    Research output: Book/Report › Book › peer-review

  41. Published

    A minimal model for multiple epidemics and immunity spreading

    Sneppen, Kim, Trusina, Ala, Jensen, Mogens Høgh & Bornholdt, S., 18 Oct 2010, In: PLoS ONE. 5, 10, p. e13326

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Real-time particle tracking at 10,000 fps using optical fiber illumination

    Otto, O., Czerwinski, F., Gornall, J. L., Stober, G., Oddershede, L. B., Seidel, R. & Keyser, U. F., 12 Oct 2010, In: Optics Express. 18, 22, p. 22722-22733 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Self-assembly based on hydrotropic counterion - Single-chain amphiphile ion pairs

    Rosholm, K. R., Gonzalez-Perez, Alfredo & Mouritsen, Ole G., 1 Oct 2010, In: Colloid and Polymer Science. 288, 14-15, p. 1351-1357 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    The unfolded protein response and translation attenuation: a modelling approach.

    Trusina, Ala & Tang, C., Oct 2010, In: Diabetes, Obesity and Metabolism Online. 12, p. 27-31

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Competition on the rocks: community growth and tessellation

    Jettestuen, E., Nermoen, A., Hestmark, G., Timdal, E. & Mathiesen, Joachim, 30 Sep 2010, In: P L o S One. 5, 9, p. e12820

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Economy of operon formation: cotranscription minimizes shortfall in protein complexes

    Sneppen, Kim, Pedersen, Steen, Krishna, S., Dodd, I. B. & Semsey, S., 21 Sep 2010, In: Microbe. 1, 4, p. e00177-10

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    N7 nanooptics

    Oddershede, L. B., 5 Sep 2010, Fuglesøcentert, Ebeltoft, DK.

    Research output: Other contribution › Research

  48. Published

    Finding diabetic nephropathy biomarkers in the plasma peptidome by high-throughput magnetic bead processing and MALDI-TOF-MS analysis

    Hansen, H. G., Overgaard, J., Lajer, M., Hubalek, F., Højrup, P., Pedersen, L., Tarnow, L., Rossing, Peter, Pociot, Flemming & McGuire, J. N., 1 Sep 2010, In: Proteomics - Clinical Applications. 4, 8-9, p. 697-705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Quantum dots as handles for optical manipulation

    Jauffred, Liselotte, Sletmoen, M., Czerwinski, F. & Oddershede, L. B., 27 Aug 2010, In: Proceedings of SPIE, the International Society for Optical Engineering. 7762

    Research output: Contribution to journal › Conference article › Research › peer-review

  50. Published

    Photon 10

    Oddershede, L. B., 25 Aug 2010, Southampton University, GB. : American Institute of Physics.

    Research output: Other contribution › Research

  51. Published

    Coexistence and invasibility in a two-species competition model with habitat-preference

    Pigolotti, S. & Cencini, M., 21 Aug 2010, In: Journal of Theoretical Biology. 265, 4, p. 609-617 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Lipid ion channels

    Heimburg, Thomas Rainer, 1 Aug 2010, In: Biophysical Chemistry. 150, 1-3, p. 2-22 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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