Biocomplexity

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  1. 2016
  2. Published

    SuperSegger: Robust image segmentation, analysis and lineage tracking of bacterial cells

    Stylianidou, S., Brennan, C., Nissen, Silas Boye, Kuwada, N. J. & Wiggins, P. A., 11 Nov 2016, In: Molecular Microbiology. 102, 4, p. 690-700 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Expert Game experiment predicts emergence of trust in professional communication networks

    Bendtsen, K. M., Uekermann, F. & Härter, Jan Olaf Mirko, 25 Oct 2016, In: Proceedings of the National Academy of Sciences USA (PNAS). 113, 43, p. 12099-12104

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fundamental structures of dynamic social networks

    Sekara, V., stopczynski, A. & Lehmann, S., 6 Sep 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 36, p. 9977-9982 6 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  5. Published

    Polymersomes mimic biofilms fractal growth

    Gonzalez-Perez, Alfredo, Feld, K. & Ruso, J. M., 1 Sep 2016, In: Journal of Polymer Research. 23, 9, 195.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Solitary electromechanical pulses in lobster neurons

    Gonzalez-Perez, Alfredo, Mosgaard, L. D., Budvytyte, R., Villagran-Vargas, E., Jackson, Andrew D. & Heimburg, Thomas Rainer, Sep 2016, In: Biophysical Chemistry. 216, p. 51-59

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Intensification of convective extremes driven by cloud–cloud interaction

    Moseley, C., Hohenegger, C., Berg, P. & Härter, Jan Olaf Mirko, 29 Aug 2016, In: Nature Geoscience. 9, 10, p. 748-752

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Controlled Cellular fusion using optically trapped Plasmonic Nano-Heaters

    Bahadori, Azra, Rørvig-Lund, A., Semsey, S., Oddershede, L. B. & Bendix, Poul Martin, 28 Aug 2016, In: Proceedings of the SPIE. 9922

    Research output: Contribution to journal › Conference article › Research › peer-review

  9. Published

    Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions

    Di Roberto, R. B., Chang, B., Trusina, Ala & Peisajovich, S. G., 4 Aug 2016, In: Nature Communications. 7, 12344.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Fast intra-fractional image-guidance with 6D positioning correction reduces delivery uncertainty for stereotactic radiosurgery and radiotherapy

    Tarnavski, N., Engelholm, S. A. & Munck af Rosenschöld, P. M., 2 Aug 2016, In: Journal of Radiosurgery and SBRT. 4, 1, p. 15-20

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A two-fluid model for vertical flow applied to CO2 injection wells

    Linga, G. & Lund, H., 1 Aug 2016, In: International Journal of Greenhouse Gas Control. 51, p. 71-80 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Non-invasive detection of animal nerve impulses with an atomic magnetometer operating near quantum limited sensitivity

    Jensen, K., Budvytyte, R., Thomas, Rodrigo A., Wang, T., Fuchs, A. M., Balabas, M. V., Vasilakis, G., Mosgaard, L. D., Stærkind, Hans, Müller, Jörg Helge, Heimburg, Thomas Rainer, Olesen, Søren-Peter & Polzik, Eugene Simon, 15 Jul 2016, In: Scientific Reports. 6, 29638.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response

    Vedel, S., Nunns, H., Košmrlj, A., Semsey, S. & Trusina, Ala, 13 Jul 2016, In: Cell Systems. 3, 2, p. 187-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Nucleosome dynamics and maintenance of epigenetic states of CpG islands

    Sneppen, Kim & Dodd, I. B., 28 Jun 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 6, 062417.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    DNA methylation in human epigenomes depends on local topology of CpG sites

    Lövkvist, Cecilia, Dodd, I. B., Sneppen, Kim & Härter, Jan Olaf Mirko, 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5123-5132

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Measure of node similarity in multilayer networks

    Møllgaard, A. E., Zettler, Ingo, Dammeyer, Jesper, Jensen, Mogens Høgh, Lehmann, S. & Mathiesen, Joachim, 14 Jun 2016, In: PLOS ONE. 11, 6, 0157436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bifurcation of transition paths induced by coupled bistable systems

    Tian, C. & Mitarai, Namiko, 7 Jun 2016, In: The Journal of Chemical Physics. 144, 21, 215102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A simulation-based study of micron scale, binary flows in porous rocks

    Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, 6 Jun 2016, CMG 2016: 31st IUGG Conference on Mathematical Geophysics, Paris. Geo-Physics, from Mathematics to Experiments. Paris, France

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  20. Published

    Study of Transitional Flows in Rough Walls Channel Flows

    Hernandez Garcia, A., Matin, R., Misztal, M. K. & Mathiesen, Joachim, 6 Jun 2016, CMG 2016: 31st IUGG Conference on Mathematical Geophysics, Paris. Geo-Physics, from Mathematics to Experiments. Paris, France

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  21. Published

    Bioinspired Materials for Water Purification

    Gonzalez-Perez, Alfredo & Persson, K. M., Jun 2016, In: Materials Transactions. 9, 6, 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Nanog, Oct4 and Tet1 interplay in establishing pluripotency

    Olariu, V., Lövkvist, Cecilia & Sneppen, Kim, 5 May 2016, In: Scientific Reports. 6, 25438.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Dynamics of Initiative in Communication Networks

    Mollgaard, A. & Mathiesen, Joachim, 28 Apr 2016, In: PLOS ONE. 11, 4, e0154442.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Diffusion retardation by binding of tobramycin in an alginate biofilm model

    Cao, B., Christophersen, L., Kolpen, Mette, Jensen, Peter Østrup, Sneppen, Kim, Høiby, Niels, Moser, Claus Ernst & Sams, T., 21 Apr 2016, In: P L o S One. 11, 4, 11 p., e0153616.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli

    Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A dosimetric comparison of real-time adaptive and non-adaptive radiotherapy: A multi-institutional study encompassing robotic, gimbaled, multileaf collimator and couch tracking

    Colvill, E., Booth, J., Nill, S., Fast, M., Bedford, J., Oelfke, U., Nakamura, M., Poulsen, P., Worm, E., Hansen, R., Ravkilde, T., Rydhog, J. S., Pommer, T., Munck af Rosenschöld, P. M., Lang, S., Guckenberger, M., Groh, C., Herrmann, C., Verellen, D., Poels, K. & 5 others, Wang, L., Hadsell, M., Sothmann, T., Blanck, O. & Keall, P., 1 Apr 2016, In: Radiotherapy & Oncology. 119, 1, p. 159-165

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Three is much more than two in coarsening dynamics of cyclic competitions

    Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Optical quantification of forces at play during stem cell differentiation

    Ritter, C., Brickman, Joshua Mark & Oddershede, L. B., 4 Mar 2016, In: Proceedings of S P I E - International Society for Optical Engineering. 9764, UNSP 97640J.

    Research output: Contribution to journal › Conference article › Research › peer-review

  29. Published

    Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas

    Dahl-Jensen, Svend Bertel, Figueiredo-Larsen, E. M., Botton, A. & Sneppen, Kim, 23 Feb 2016, In: Physical Biology. 13, 1, 016007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Food Web Assembly Rules for Generalized Lotka-Volterra Equations

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Injectable silver nanosensors: in vivo dosimetry for external beam radiotherapy using positron emission tomography

    Christensen, A. N., Rydhög, J. S., Søndergaard, R. V., Andresen, T. L., Holm, S., Munck af Rosenschöld, P. M., Conradsen, K. & Jølck, R. I., 8 Jan 2016, In: Nanoscale. 8, 21, p. 11002-11011

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A Monte Carlo study of the early steps of functional amyloid formation

    Tian, P., Lindorff-Larsen, Kresten, Boomsma, Wouter, Jensen, Mogens Høgh & Otzen, D. E., 2016, In: P L o S One. 11, 1, 18 p., e0146096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A cross-immunization model for the extinction of old influenza strains

    Uekermann, F. & Sneppen, Kim, 2016, In: Scientific Reports. 6, 8 p., 25907.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Dynamics of membrane nanotubes coated with I-BAR

    Farhangibarooji, Younes, Rørvig-Lund, A., Semsey, S., S. Reihani, S. N. & Bendix, Poul Martin, 2016, In: Scientific Reports. 6, 30054.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    From Pore Scale to Turbulent Flow with the Unstructured Lattice Boltzmann Method

    Matin, R., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  36. Published

    Fusion of Selected Cells and Vesicles Mediated by Optically Trapped Plasmonic Nanoparticles

    Bahadori, Azra, 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 161 p.

    Research output: Book/Report › Ph.D. thesis

  37. Published

    Human T cell responses to Japanese encephalitis virus in health and disease

    Turtle, L., Bali, T., Buxton, G., Chib, S., Chan, S., Soni, M., Hussain, M., Isenman, H., Fadnis, P., Venkataswamy, M. M., Satishkumar, V., Lewthwaite, P., Kurioka, A., Krishna, S., Shankar, M. V., Ahmed, R., Begum, A., Ravi, V., Desai, A., Yoksan, S. & 7 others, Fernandez, S., Willberg, C. B., Kløverpris, Henrik Nyhus, Conlon, C., Klenerman, P., Satchidanandam, V. & Solomon, T., 2016, In: Journal of Experimental Medicine.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Inflammation: Modelling function and failure of the innate immune system

    Holst-Hansen, T., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  39. Published

    Information Spreading in Epidemics and in Communication Networks

    Uekermann, F. P., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  40. Published

    Mathematical models of human behavior

    Møllgaard, A. E., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  41. Published

    Nucleation and spreading of a heterochromatic domain in fission yeast

    Obersriebnig, M. J., Pallesen, E. M. H., Sneppen, Kim, Trusina, Ala & Thon, Genevieve, 2016, In: Nature Communications. 7, 11 p., 11518.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Numerical simulations and mathematical models of flows in complex geometries: From laminar to turbulent regimes

    Hernandez Garcia, A., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  43. Published

    On polarization in biomembranes

    Zecchi, K. A., 2016, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  44. Published

    Reduction of Cheddar cheese ripening time through the addition of glucose

    Møller, C. O. D. A., Czárán, T. L., Christensen, B. B., Siegumfeldt, Henrik & Rattray, F. P., 2016.

    Research output: Contribution to conference › Poster › Research

  45. Published

    Scale selection in columnar jointing: insights from experiments on cooling stearic acid and numerical simulations

    Christensen, A., Raufaste, C., Misztal, M. K., Celestini, F., Guidi, M., Ellegaard, Clive Sigurd & Mathiesen, Joachim, 2016, In: Journal of Geophysical Research: Solid Earth. 121, 3, p. 1462-1482 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Single Particle and PET-based Platform for Identifying Optimal Plasmonic Nano-Heaters for Photothermal Cancer Therapy

    Jørgensen, Jesper Tranekjær, Nørregaard, K., Tian, P., Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 2016, In: Scientific Reports. 6, 10 p., 30076.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Stabilization of epigenetic states of CpG islands by local cooperation

    Sormani, G., Härter, Jan Olaf Mirko, Lövkvist, Cecilia & Sneppen, Kim, 2016, In: Molecular BioSystems. 12, 7, p. 2142-2146

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    tN-Ras, Synaptotagmin1 C2Ab, Annexinb12 and Amphiphysin NBAR can Discriminate Spherical from Cylindrical Membrane Curvature

    kpl171, kpl171, Larsen, J., Rosholm, K. R., Pedersenb, S. L., Munch, H. K., Tkach, Vadym, Sakon, J. J., Bjornholm, T., Weninger, K. R., Bendix, Poul Martin, Jensen, Knud Jørgen, Uline, M. J., Hatzakis, Nikos & Stamou, Dimitrios, 2016, In: Biophysical Journal. 110, 3, 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  49. 2015
  50. Published

    Disparate metabolic response to fructose feeding between different mouse strains

    Montgomery, M. K., Fiveash, C. E., Braude, J. P., Osborne, Brenna, Brown, Stanley, Mitchell, T. W. & Turner, N., 22 Dec 2015, In: Scientific Reports. 5, 18474.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    The Effect of the Nonlinearity of the Response of Lipid Membranes to Voltage Perturbations on the Interpretation of Their Electrical Properties. A New Theoretical Description

    Mosgaard, L. D., Zecchi, K. A., Heimburg, Thomas Rainer & Budvytyte, R., Dec 2015, In: Membranes. 5, 4, p. 495-512

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Schelling model of cell segregation based only on local information

    Nielsen, Alexander Valentin, Gade, A. L., Juul, J. & Strandkvist, C., 4 Nov 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 5, 052705.

    Research output: Contribution to journal › Journal article › Research › peer-review

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