Biocomplexity

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  1. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Biophysical Modeling of Dopaminergic Denervation Landscapes in the Striatum Reveals New Therapeutic Strategy

    Heltberg, Mathias Spliid, Awada, H. N., Lucchetti, Alessandra, Jensen, Mogens Høgh, Dreyer, J. K. & Rasmussen, R. N., 2022, In: eNeuro. 9, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Biomimetic triblock copolymer membranes: from aqueous solutions to solid supports

    Gonzalez-Perez, Alfredo, Castelletto, V., Hamley, I. W. & Taboada, P., 1 Jan 2011, In: Soft Matter. 7, 3, p. 1129-1138

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Biomimetic triblock copolymer membrane arrays: A stable template for functional membrane proteins

    Gonzalez-Perez, Alfredo, Stibius, K. B., Vissing, T., Nielsen, Claus Henrik & Mouritsen, Ole G., 15 Sep 2009, In: Langmuir. 25, 18, p. 10447-10450 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Biological systems on a small scale

    Pedersen, L., 2012, Center for Ice & Climate: Faculty of Science, University of Copenhagen. 184 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Biological Applications of Thermoplasmonics

    Thusgaard Ruhoff, Victoria, Arastoo, Mohammadreza, Moreno Pescador, Guillermo Sergio & Bendix, Poul Martin, 6 Jan 2024, In: Nano Letters. 24, 3, p. 777-789 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Bioinspired Materials for Water Purification

    Gonzalez-Perez, Alfredo & Persson, K. M., Jun 2016, In: Materials Transactions. 9, 6, 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Binding self-propelled topological defects in active turbulence

    Thijssen, K. & Doostmohammadi, Amin, 13 Oct 2020, In: Physical Review Research. 2, 4, 6 p., 042008.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Binding of the N-terminal domain of the lactococcal bacteriophage TP901-1 CI repressor to its target DNA: a crystallography, small angle scattering, and nuclear magnetic resonance study

    Frandsen, Kristian Erik Høpfner, Rasmussen, K. K., Jensen, M. R., Hammer, K., Pedersen, M., Poulsen, Jens-Christian Navarro, Arleth, Lise & Lo Leggio, Leila, 2013, In: Biochemistry. 52, 39, p. 6892-6904 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Bifurcation of transition paths induced by coupled bistable systems

    Tian, C. & Mitarai, Namiko, 7 Jun 2016, In: The Journal of Chemical Physics. 144, 21, 215102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Bifractal nature of chromosome contact maps

    Pigolotti, S., Jensen, Mogens Høgh, Zhan, Y. & Tiana, G., 15 Oct 2020, In: Physical Review Research. 2, 4, 9 p., 043078.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Bernaise: A Flexible Framework for Simulating Two-Phase Electrohydrodynamic Flows in Complex Domains

    Linga, G., Bolet, A. & Mathiesen, Joachim, 4 Mar 2019, In: Frontiers in Physics. 7, 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Bending of a lipid membrane edge by annexin A5 trimers

    Pandey, M. P., Telles de Souza, P. C., Pezeshkian, Weria & Khandelia, H., 16 Apr 2024, In: Biophysical Journal. 123, 8, p. 1006-1014 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Belief propagation and replicas for inference and learning in a kinetic Ising model with hidden spins

    Battistin, C., Hertz, John, Tyrcha, J. & Roudi, Y., 10 May 2015, In: Journal of Statistical Mechanics: Theory and Experiment. 2015, P05021.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Bekymrede forskere: Politisk styring af offentlige forskningsmidler må ikke underminere grundforskningen

    Vallgårda, Karen Asta Arnfred, Bjørk, R., Dalsgaard, P., Dimke, H., Jauffred, Liselotte, Kropp, K., Laustsen, A. H., Pedersen, B. P. & Sørensen, Thomas Just, 30 Sep 2020, In: Science Report.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  16. Published

    Bayesian inference is facilitated by modular neural networks with different time scales

    Ichikawa, K., Kaneko, Kunihiko & Serre, T. (ed.), 13 Mar 2024, In: PLOS Computational Biology. 20, 3, 21 p., e1011879.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Basement membrane stiffness determines metastases formation

    Reuten, R., Zendehroud, S., Nicolau, M., Fleischhauer, L., Laitala, A., Kiderlen, S., Nikodemus, D., Wullkopf, L., Nielsen, S. R., Mcneilly, S., Prein, C., Rafaeva, M., Schoof, E. M., Furtwängler, B., Porse, B. T., Kim, H., Won, K. J., Sudhop, S., Zornhagen, K. W., Suhr, F. & 11 others, Maniati, E., Pearce, O. M. T., Koch, M., Oddershede, L. B., Van Agtmael, T., Madsen, C. D., Mayorca Guiliani, Alejandro Enrique, Bloch, W., Netz, R. R., Clausen-schaumann, H. & Erler, Janine, 2021, In: Nature Materials. 20, p. 892–903

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Barriers and Silencers: A Theoretical Toolkit for Control and Containment of Nucleosome-Based Epigenetic States

    Dodd, I. B. & Sneppen, Kim, 9 Dec 2011, In: Journal of Molecular Biology. 414, 4, p. 624-637

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow

    Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Bacteria solve the problem of crowding by moving slowly

    Meacock, O. J., Doostmohammadi, Amin, Foster, K. R., Yeomans, J. M. & Durham, W. M., 23 Nov 2020, In: Nature Physics. 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Backscattering-based detection scheme for dark-field optical tweezers

    Samadi, A., Mousavi, S. M., Hajizadeh, F. & Reihani, S. N. S., 1 Jun 2019, In: Journal of the Optical Society of America B: Optical Physics. 36, 6, p. 1587-1593

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Backscattering and channeling study of lead inclusions in Pb-implanted aluminium

    Bourdelle, K. K., Andersen, H. H., Johansen, A., Johnson, Erik, Sarholt-Kristensen, L., Steenstrup, S. & Yu, L. D., 1992, In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. B64, p. 143-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Axelrod model: accepting or discussing

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 1 Oct 2012, In: European Physical Journal B. Condensed Matter and Complex Systems. 85, 10, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Avoidance of error catastrophe via proofreading innate to template-directed polymerization

    Matsubara, Y. J., Takeuchi, N. & Kaneko, Kunihiko, 13 Mar 2023, In: Physical Review Research. 5, 13 p., 013170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Autotoxin-mediated latecomer killing in yeast communities

    Oda, A. H., Tamura, M., Kaneko, Kunihiko, Ohta, K. & Hatakeyama, T. S., 7 Nov 2022, In: PLOS Biology. 20, 11, 23 p., 3001844.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Asymmetric Segregation of Damaged Cellular Components in Spatially Structured Multicellular Organisms

    Strandkvist, C., Juul, J. S. & Bendtsen, K. M., 13 Feb 2014, In: PLoS ONE. 9, 2, e87917.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response

    Vedel, S., Nunns, H., Košmrlj, A., Semsey, S. & Trusina, Ala, 13 Jul 2016, In: Cell Systems. 3, 2, p. 187-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Assessing the uncertainty of soil moisture impacts on convective precipitation using a new ensemble approach

    Henneberg, O., Ament, F. & Gruetzun, V., 7 May 2018, In: Atmospheric Chemistry and Physics. 18, 9, p. 6413-6425

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Are Local Anesthetics and General Anesthetics Different?

    Sasse-Middelhoff, H., Zecchi, K. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 705A-705A

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Arachidonic Acid Randomizes Endothelial Cell Motion and Regulates Adhesion and Migration

    Rossen, Ninna Struck, Hansen, A., Oddershede, L. B. & Selhuber-Unkel, C. J. M., 23 Sep 2011, In: PLoS ONE. 6, 9, p. e25196

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Applying allometric scaling to predator-prey systems

    Eilersen, Andreas Thomas & Sneppen, Kim, 8 Feb 2019, In: Physical Review E. 99, 2, 8 p., 022405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

    Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Anomalous diffusion and power-law relaxation of the time averaged mean squared displacement in worm-like micellar solutions

    Joen, J., Leijnse, N., Oddershede, L. B. & Metzler, R., 17 Apr 2013, In: New Journal of Physics. 15, p. 045011

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Annexins in Plasma Membrane Repair

    Florentsen, C. D., 2020, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 218 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Annexin V is a Sensor of Negative Plasma Membrane Curvature

    Florentsen, C. D., Moreno Pescador, Guillermo Sergio, Sonne, A. K., Nylandsted, J. & Bendix, Poul Martin, 15 Feb 2019, In: Biophysical Journal. 116, 3, Supp. 1, p. 519A-519A

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  36. Published

    Annexin A4 trimers are recruited by high membrane curvatures in giant plasma membrane vesicles

    Florentsen, C. D., Kamp-Sonne, A., Moreno Pescador, Guillermo Sergio, Pezeshkian, Weria, Hakami Zanjani, A. A., Khandelia, H., Nylandsted, J. & Bendix, Poul Martin, 2021, In: Soft Matter. 17, 2, p. 308-318 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Annexin A4 senses membrane curvature in a density-dependent manner

    Florentsen, C. D., Daniels, J. A., Moreno Pescador, Guillermo Sergio, Qoqaj, I., Nylandsted, J. & Bendix, Poul Martin, 2021, bioRxiv, 11 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  38. Published

    Angular distributions of sputtered particles from Lithium-implanted Aluminium and Copper crystals

    Johansen, A., Johnson, Erik, Sarholt-Kristensen, L., Steenstrup, S., Andersen, H. H., Buhanov, V. M., Chernysh, V. S. & Minnebaev, K. F., 1991, In: Nuclear Instruments and Methods in Physics Reseach B. 61, p. 21-26

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Analyzing powers of inelastic dp scattering in the energy region of Delta and Roper resonances excitation

    Malinina, LV., Alkhazov, GD., Augustyniak, W., Boivin, M., Boyard, JL., Dahl, R., Drews, M., Ellegaard, C., Fahri, L., Gaarde, C., Hennino, T., Jourdain, JC., Kagarlis, M., Kravtsov, AV., Kunne, R., Larsen, JS., Morsch, P., Mylnikov, VA., Orischin, EA., Perdrisat, CF. & 15 others, Piskunov, N., Prokofiev, A., Punjabi, V., Radvanyi, P., Ramstein, B., Razmyslovich, B., Roy-Stephan, M., Sitnik, I., Skousen, M., Strokovsky, E., Tkach, I., Tomasi-Gustafsson, E., Volkov, S., Zhdanov, A. & Zupranski, P., 1 Dec 2001, In: Physical Review C (Nuclear Physics). 64, 6, 064001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Analyzing inflammatory response as excitable media

    Yde, Pernille, Jensen, Mogens Høgh & Trusina, Ala, 18 Nov 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 5, Part 1, p. 051913

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Analytical approach to continuous and intermittent bottleneck flows

    Helbing, D., Johansson, A., Mathiesen, Joachim, Jensen, Mogens Høgh & Hansen, A. C., 2006, In: Physical Review Letters. 97, 16, p. 168001 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Analysis of the complete DNA sequence of the temperate bacteriophage TP901-1: evolution, structure, and genome organization of lactococcal bacteriophages

    Brøndsted, L., Østergaard, S., Pedersen, M., Hammer, K. & Vogensen, F. K., 25 Apr 2001, In: Virology. 283, 1, p. 93-109 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    An updated look at actin dynamics in filopodia

    Leijnse, N., Oddershede, L. B. & Bendix, Poul Martin, 1 Feb 2015, In: Cytoskeleton. 72, 2, p. 71-79

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    An investigation on methods for free-field comparison calibration of measurement microphones

    Barrera Figueroa, S., Moreno Pescador, Guillermo Sergio, Jacobsen, F., Rasmussen, K., Cutanda Henriquez, V. & Juhl, P. M., 2010, Proceedings of Internoise 2010: 39th International Congress and Exposition on Noise Control Engineering - Lisbon, Portugal Duration:,15 Jun 2010 → 16 Jun 2010. Portugal, Lisbon, Vol. 39. p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  45. Published

    An easy-to-prepare mini-scaffold for DNA origami

    Brown, Stanley, Majikes, J., Martinez, A., Giron, T. M., Fennell, H., Samano, E. C. & LaBean, T. H., 22 Jul 2015, In: Nanoscale. 7, 40, p. 16621-16624

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    An alternative approach to the limits of predictability in human mobility

    Ikanovic, E. L. & Mollgaard, A., 19 Jun 2017, In: EPJ Data Science. 6, 12.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    An active biopolymer network controlled by molecular motors

    Koenderink, G. H., Dogic, Z., Nakamura, F. & Bendix, Poul Martin, 8 Sep 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 36, p. 15192-15197 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    An activator of transcription regulates phage TP901-1 late gene expression

    Brøndsted, L., Pedersen, M. & Hammer, K., 1 Dec 2001, In: Applied and Environmental Microbiology. 67, 12, p. 5626-2633 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Amplitude equation and long-rang interactions in underwater sand ripples in one dimension

    Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Alveolar cytokines and interferon autoantibodies in COVID-19 ARDS

    Jonassen, T. B., Jørgensen, S. E., Mitchell, N. H., Mogensen, T. H., Berg, Ronan Martin Griffin, Ronit, A. & Plovsing, Ronni Thermann Reitz, 2024, In: Frontiers in Immunology. 15, 9 p., 1353012.

    Research output: Contribution to journal › Journal article › Research › peer-review

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