- Published
Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression
Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Speciation-rate dependence in species-area relationships
Pigolotti, S. & Cencini, M., 7 Sep 2009, In: Journal of Theoretical Biology. 260, 1, p. 83-89 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Speciation, diversification, and coexistence of sessile species that compete for space
Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal structure of traffic flow in a system with an open boundary
Mitarai, Namiko & Nakanishi, H., 21 Aug 2000, In: Physical Review Letters. 85, 8, p. 1766-1769Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal model of cellular mechanotransduction via Rho and YAP
Novev, Yavor Kirilov, Heltberg, Mathias Spliid, Jensen, Mogens Høgh & Doostmohammadi, Amin, 17 Aug 2021, In: Integrative Biology. 13, 8, p. 197-209 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal NF-kappa B dynamics encodes the position, amplitude, and duration of local immune inputs
Son, M., Frank, T., Holst-Hansen, T., Wang, A. G., Junkin, M., Kashaf, S. S., Trusina, Ala & Tay, S., 2 Sep 2022, In: Science Advances. 8, 35, 14 p., 6240.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial patterns of competing random walkers
Hernandez-Garcia, E., Heinsalu, E. & Lopez, C., 1 Mar 2015, In: Ecological Complexity: An International Journal on Biocomplexity in the Environment and Theoretical Ecology. 21, SI, p. 166-176Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial model of Ebola outbreaks contained by behavior change
Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial heterogeneity affects predictions from early-curve fitting of pandemic outbreaks: a case study using population data from Denmark
Heltberg, Mathias Spliid, Michelsen, C., Martiny, E. S., Christensen, L. E., Jensen, Mogens Høgh, Halasa, T. & Petersen, Troels Christian, 14 Sep 2022, In: Royal Society Open Science. 9, 9, 9 p., 220018.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial determinants of viral infections
Eriksen, R. S., 2020, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 205 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Spatial Structures and Regulation in Biological Systems
Yde, Pernille, 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 167 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus
Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial Models and Networks of Living Systems
Juul, J. S., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 156 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Solvable neural network model for input-output associations: Optimal recall at the onset of chaos
Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soliton collision in biomembranes and nerves - A stability study.
Appali, R., Lautrup, B. E., Heimburg, Thomas Rainer & van Rienen, U., 2012, In: Journal of Mathematics in Industry. 16, p. 205-212Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Solitary electromechanical pulses in lobster neurons
Gonzalez-Perez, Alfredo, Mosgaard, L. D., Budvytyte, R., Villagran-Vargas, E., Jackson, Andrew D. & Heimburg, Thomas Rainer, Sep 2016, In: Biophysical Chemistry. 216, p. 51-59Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems
Palarasah, Y., Skjødt, Mikkel-Ole, Vitved, L., Andersen, T. E., Skjoedt, K. & Koch, C., Mar 2010, In: Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Social network differences of chronotypes identified from mobile phone data
Aledavood, T., Lehmann, S. & Saramaki, J., 1 Dec 2018, In: EPJ Data Science. 7, 13 p., 46.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Social contagion in a world with asymmetric influence
Halvorsen, G. S., Pedersen, B. N. & Sneppen, Kim, 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Small-scale nonequilibrium systems
Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence
Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-file dynamics with different diffusion constants
Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell tracking reveals super-spreading brain cancer cells with high persistence
Nousi, A., Sogaard, M. T., Audion, M. & Jauffred, Liselotte, 1 Dec 2021, In: Biochemistry and Biophysics Reports. 28, 12 p., 101120.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell Analysis of Lambda Immunity Regulation
Bæk, K. T., Svenningsen, Sine Lo, Eisen, H., Sneppen, Kim & Brown, Stanley, 2003, In: Journal of Molecular Biology. 334, 3, p. 363-372 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium
Moses, M. E., Lund, P. M., Bohr, S. S., Iversen, J. F., Kæstel-Hansen, J., Kallenbach, A. S., Iversen, L., Christensen, S. M. & Hatzakis, Nikos, 2021, In: A C S Applied Materials and Interfaces. 13, 28, 9 p., 33704.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single Particle and PET-based Platform for Identifying Optimal Plasmonic Nano-Heaters for Photothermal Cancer Therapy
Jørgensen, Jesper Tranekjær, Nørregaard, K., Tian, P., Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 2016, In: Scientific Reports. 6, 10 p., 30076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations
Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultaneous three-dimensional tracking of individual signals from multi-trap optical tweezers using fast and accurate photodiode detection
Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 22 Sep 2014, In: Optics Express. 22, 19, p. 23661-23672Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simulating anomalous dispersion in porous media using the unstructured lattice Boltzmann method
Misztal, M. K., Hernandez Garcia, A., Matin, R., Müter, D., Jha, D., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Frontiers in Physics. 3, 9 p., 50.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simulating Anomalous Dispersion and Multiphase Segregation in Porous Media with the Lattice Boltzmann Method
Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Simplified models of biological networks
Sneppen, Kim, Krishna, S. & Semsey, S., 4 Jan 2010, In: Annual Review of Biophysics and Biomolecular Structure. 9, 39, p. 43-59 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple model for wet granular materials with liquid cluster
Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple bacterial growth model for the formation of spontaneous and triggered dormant subpopulations
Svenningsen, Mikkel Skjoldan & Mitarai, Namiko, 2024, In: Physical Review Research. 6, 3, 033072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple Interaction Model for Particlly Wet Granular Materials
Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Significant improvement of optical traps by tuning standard water immersion objectives
Seyyed Reihani, S. N., Richardson, A. C. & Oddershede, L. B., 1 Oct 2011, In: Journal of Optics. 13, 10, p. 105301Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Signalling and Feedback in Biological Networks
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Signal integration in the galactose network of Escherichia coli
Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas
Dahl-Jensen, Svend Bertel, Figueiredo-Larsen, E. M., Botton, A. & Sneppen, Kim, 23 Feb 2016, In: Physical Biology. 13, 1, 016007.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short-range correlation of stress chains near solid-to-liquid transition in active monolayers
Khosh Sokhan Monfared, Siavash, Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 8 May 2024, In: Journal of the Royal Society Interface. 21, 214, 8 p., 20240022.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shear and Rapeseed Oil Addition Affect the Crystal Polymorphic Behavior of Milk Fat
Kaufmann, N., Kirkensgaard, Jacob Judas Kain, Andersen, U. & Wiking, L., 1 Jun 2013, In: Journal of the American Oil Chemists' Society. 90, 6, p. 871-880Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shear Thickening Oscillation in a Dilatant Fluid
Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shape of the membrane neck around a hole during plasma membrane repair
Klenow, M. B., Vigsø, M. S., Pezeshkian, Weria, Nylandsted, J., Lomholt, M. A. & Simonsen, A. C., 2 Jul 2024, In: Biophysical Journal. 123, 13, p. 1827-1837 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Severe population collapses and species extinctions in multihost epidemic dynamics
Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Separation and pattern formation in hydraulic jumps
Bohr, T., Ellegaard, Clive Sigurd, Hansen, A., Hansen, K., Haaning, A., Putkaradze, V. & Watanabe, S., 1 Feb 1998, In: Physica A: Statistical Mechanics and its Applications. 249, 1-4, p. 111-117Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SensibleSleep: A Bayesian Model for Learning Sleep Patterns from Smartphone Events
Cuttone, A., Baekgaard, P., Sekara, V., Jonsson, H., Larsen, J. E. & Lehmann, S., 11 Jan 2017, In: PLOS ONE. 12, 1, e0669901.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Semiconductor Eco-materials for Water Treatment
Gonzalez-Perez, Alfredo, Persson, K. M. & Samuelson, L., 2019, Handbook of Ecomaterials. Martínez, L. M. T., Kharissova, O. V. & Kharisov, B. I. (eds.). Springer, p. 413-439 Chapter 170Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Self-sustained oscillations of active viscoelastic matter
Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-similar distributions of fluid velocity and stress heterogeneity in a dissolving porous limestone
Linga, G., Mathiesen, Joachim & Renard, F., Mar 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 3, p. 1726-1743Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-organizing systems and disease modelling: From Molecules to Populations
Nielsen, Bjarke Frost, 2021, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 206 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Self-organized quantization and oscillations on continuous fixed-energy sandpiles
Niehues, J., Jensen, Gorm Gruner & Härter, Jan Olaf Mirko, 31 Mar 2022, In: Physical Review E. 105, 3, 13 p., 034314.Research output: Contribution to journal › Journal article › Research › peer-review
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes
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