Biocomplexity

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  1. Published

    Spatiotemporal NF-kappa B dynamics encodes the position, amplitude, and duration of local immune inputs

    Son, M., Frank, T., Holst-Hansen, T., Wang, A. G., Junkin, M., Kashaf, S. S., Trusina, Ala & Tay, S., 2 Sep 2022, In: Science Advances. 8, 35, 14 p., 6240.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Spatial patterns of competing random walkers

    Hernandez-Garcia, E., Heinsalu, E. & Lopez, C., 1 Mar 2015, In: Ecological Complexity: An International Journal on Biocomplexity in the Environment and Theoretical Ecology. 21, SI, p. 166-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Spatial model of Ebola outbreaks contained by behavior change

    Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Spatial heterogeneity affects predictions from early-curve fitting of pandemic outbreaks: a case study using population data from Denmark

    Heltberg, Mathias Spliid, Michelsen, Christian Buus, Martiny, E. S., Christensen, L. E., Jensen, Mogens Høgh, Halasa, T. & Petersen, Troels Christian, 14 Sep 2022, In: Royal Society Open Science. 9, 9, 9 p., 220018.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Spatial determinants of viral infections

    Eriksen, R. S., 2020, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Spatial Structures and Regulation in Biological Systems

    Yde, Pernille, 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus

    Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Spatial Models and Networks of Living Systems

    Juul, J. S., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Solvable neural network model for input-output associations: Optimal recall at the onset of chaos

    Kurikawa, T. & Kaneko, Kunihiko, 8 Dec 2023, In: Physical Review Research. 5, 4, 8 p., 043221.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Soliton collision in biomembranes and nerves - A stability study.

    Appali, R., Lautrup, B. E., Heimburg, Thomas Rainer & van Rienen, U., 2012, In: Journal of Mathematics in Industry. 16, p. 205-212

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Solitary electromechanical pulses in lobster neurons

    Gonzalez-Perez, Alfredo, Mosgaard, L. D., Budvytyte, R., Villagran-Vargas, E., Jackson, Andrew D. & Heimburg, Thomas Rainer, Sep 2016, In: Biophysical Chemistry. 216, p. 51-59

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems

    Palarasah, Y., Skjødt, Mikkel-Ole, Vitved, L., Andersen, T. E., Skjoedt, K. & Koch, C., Mar 2010, In: Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Social network differences of chronotypes identified from mobile phone data

    Aledavood, T., Lehmann, S. & Saramaki, J., 1 Dec 2018, In: EPJ Data Science. 7, 13 p., 46.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Social contagion in a world with asymmetric influence

    Halvorsen, G. S., Pedersen, B. N. & Sneppen, Kim, 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Small-scale nonequilibrium systems

    Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  16. Published

    Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence

    Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Single-file dynamics with different diffusion constants

    Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Single-cell tracking reveals super-spreading brain cancer cells with high persistence

    Nousi, A., Sogaard, M. T., Audion, M. & Jauffred, Liselotte, 1 Dec 2021, In: Biochemistry and Biophysics Reports. 28, 12 p., 101120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Single-cell Analysis of Lambda Immunity Regulation

    Bæk, K. T., Svenningsen, Sine Lo, Eisen, H., Sneppen, Kim & Brown, Stanley, 2003, In: Journal of Molecular Biology. 334, 3, p. 363-372 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium

    Moses, M. E., Lund, P. M., Bohr, S. S., Iversen, J. F., Kæstel-Hansen, J., Kallenbach, A. S., Iversen, L., Christensen, S. M. & Hatzakis, Nikos, 2021, In: A C S Applied Materials and Interfaces. 13, 28, 9 p., 33704.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Single Particle and PET-based Platform for Identifying Optimal Plasmonic Nano-Heaters for Photothermal Cancer Therapy

    Jørgensen, Jesper Tranekjær, Nørregaard, K., Tian, P., Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 2016, In: Scientific Reports. 6, 10 p., 30076.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations

    Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Simultaneous three-dimensional tracking of individual signals from multi-trap optical tweezers using fast and accurate photodiode detection

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 22 Sep 2014, In: Optics Express. 22, 19, p. 23661-23672

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Simulating anomalous dispersion in porous media using the unstructured lattice Boltzmann method

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Müter, D., Jha, D., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Frontiers in Physics. 3, 9 p., 50.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Simulating Anomalous Dispersion and Multiphase Segregation in Porous Media with the Lattice Boltzmann Method

    Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.

    Research output: Contribution to conference › Conference abstract for conference › Research

  26. Published

    Simplified models of biological networks

    Sneppen, Kim, Krishna, S. & Semsey, S., 4 Jan 2010, In: Annual Review of Biophysics and Biomolecular Structure. 9, 39, p. 43-59 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Simple model for wet granular materials with liquid cluster

    Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Simple Interaction Model for Particlly Wet Granular Materials

    Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220

    Research output: Contribution to journal › Conference article › Research › peer-review

  29. Published

    Significant improvement of optical traps by tuning standard water immersion objectives

    Seyyed Reihani, S. N., Richardson, A. C. & Oddershede, L. B., 1 Oct 2011, In: Journal of Optics. 13, 10, p. 105301

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Signalling and Feedback in Biological Networks

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  31. Published

    Signal integration in the galactose network of Escherichia coli

    Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas

    Dahl-Jensen, Svend Bertel, Figueiredo-Larsen, E. M., Botton, A. & Sneppen, Kim, 23 Feb 2016, In: Physical Biology. 13, 1, 016007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Short-range correlation of stress chains near solid-to-liquid transition in active monolayers

    Khosh Sokhan Monfared, Siavash, Ravichandran, G., Andrade, J. E. & Doostmohammadi, Amin, 8 May 2024, In: Journal of the Royal Society Interface. 21, 214, 8 p., 20240022.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Shear and Rapeseed Oil Addition Affect the Crystal Polymorphic Behavior of Milk Fat

    Kaufmann, N., Kirkensgaard, Jacob Judas Kain, Andersen, U. & Wiking, L., 1 Jun 2013, In: Journal of the American Oil Chemists' Society. 90, 6, p. 871-880

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Shear Thickening Oscillation in a Dilatant Fluid

    Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Severe population collapses and species extinctions in multihost epidemic dynamics

    Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Separation and pattern formation in hydraulic jumps

    Bohr, T., Ellegaard, Clive Sigurd, Hansen, A., Hansen, K., Haaning, A., Putkaradze, V. & Watanabe, S., 1 Feb 1998, In: Physica A: Statistical Mechanics and its Applications. 249, 1-4, p. 111-117

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    SensibleSleep: A Bayesian Model for Learning Sleep Patterns from Smartphone Events

    Cuttone, A., Baekgaard, P., Sekara, V., Jonsson, H., Larsen, J. E. & Lehmann, S., 11 Jan 2017, In: PLOS ONE. 12, 1, e0669901.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Semiconductor Eco-materials for Water Treatment

    Gonzalez-Perez, Alfredo, Persson, K. M. & Samuelson, L., 2019, Handbook of Ecomaterials. Martínez, L. M. T., Kharissova, O. V. & Kharisov, B. I. (eds.). Springer, p. 413-439 Chapter 170

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  40. Published

    Self-sustained oscillations of active viscoelastic matter

    Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Self-similar distributions of fluid velocity and stress heterogeneity in a dissolving porous limestone

    Linga, G., Mathiesen, Joachim & Renard, F., Mar 2017, In: Journal of Geophysical Research: Biogeosciences. 122, 3, p. 1726-1743

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Self-organizing systems and disease modelling: From Molecules to Populations

    Nielsen, Bjarke Frost, 2021, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 206 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Self-organized quantization and oscillations on continuous fixed-energy sandpiles

    Niehues, J., Jensen, Gorm Gruner & Härter, Jan Olaf Mirko, 31 Mar 2022, In: Physical Review E. 105, 3, 13 p., 034314.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Self-organization of structures and networks from merging and small-scale fluctuations

    Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Self-consistent method for density estimation

    Bernacchia, A. & Pigolotti, S., 1 Jan 2011, In: Journal of The Royal Statistical Society Series B-statistical Methodology. 73, Part 3, p. 407-422

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

    Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Self-assembly based on hydrotropic counterion - Single-chain amphiphile ion pairs

    Rosholm, K. R., Gonzalez-Perez, Alfredo & Mouritsen, Ole G., 1 Oct 2010, In: Colloid and Polymer Science. 288, 14-15, p. 1351-1357 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  48. Published

    Self-assembling drugs: A new therapeutic strategy

    Hassan, N., Ruso, J. M. & Gonzalez-Perez, Alfredo, 3 May 2011, In: Soft Matter. 7, 11, p. 5194-5199 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Selection by pairwise comparisons with limited resources

    Laureti, P., Mathiesen, Joachim & Zhang, Y. C., 15 Jul 2004, In: Physica A: Statistical Mechanics and its Applications. 338, 3-4, p. 596-604 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Segregation in water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 13 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, Part 2, p. 016309 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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