Biocomplexity

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  1. 2014
  2. Published

    Non-Steady Wall-Bounded Flows of Viscoelastic Fluids Under Periodic Forcing

    Hernandez-Garcia, A., Fernandez Barbero, A. & Sotolongo-Costa, O., 1 Aug 2014, In: Brazilian Journal of Physics. 44, 4, p. 315-325

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Saturation of Shape Instabilities in Single Bubble Sonoluminescence Saturation

    Levinsen, Mogens, 29 Jul 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 90, 1, 013026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The Strength of Friendship Ties in Proximity Sensor Data

    Sekara, V. & Jørgensen, S. L., 7 Jul 2014, In: P L o S One. 9, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Enabling accurate photodiode detection of multiple optical traps by spatial filtering: Optical Trapping and Optical Micromanipulation XI

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 16 Jun 2014, In: Proceedings of S P I E - International Society for Optical Engineering. 9164, p. 916411- 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Jamming Transition in Kinetically Constrained Models with Reflection Symmetry

    Ohta, H. & sasa, S., 1 Jun 2014, In: Journal of Statistical Physics. 155, 5, p. 827-842

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Optical Trapping of Nanoparticles and Quantum Dots

    Bendix, Poul Martin, Jauffred, Liselotte, Nørregaard, K. & Oddershede, L. B., 1 Jun 2014, In: IEEE Journal of Selected Topics in Quantum Electronics. 20, 3, 4800112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Recurrences after intensity modulated radiotherapy for head and neck squamous cell carcinoma more likely to originate from regions with high baseline [18F]-FDG uptake

    Due, A. K., Vogelius, Ivan R. , Aznar, M. C., Bentzen, S. M., Berthelsen, A. K., Korreman, S. S., Loft, A., Kristensen, C. A. & Specht, Lena, 1 Jun 2014, In: Radiotherapy & Oncology. 111, 3, p. 360-365

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Mutations in Transcriptional Regulators Allow Selective Engineering of Signal Integration Logic

    Semsey, S., 25 May 2014, In: mBio (Print). 5, 3, e01171.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The Thermodynamics of General and Local Anesthesia

    Graesboll, K., Sasse-Middelhoff, H. & Heimburg, Thomas Rainer, 20 May 2014, In: Biophysical Journal. 106, 10, p. 2143-2156

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Speciation, diversification, and coexistence of sessile species that compete for space

    Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Sub-diffraction positioning of a two-photon excited and optically trapped quantum dot

    Jauffred, Liselotte, Kyrsting, A. H., Christensen, E. A., Seyyed Reihani, S. N. & Oddershede, L. B., 6 May 2014, In: Nanoscale. 6, 12, p. 6997-7003

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Crosstalk elimination in the detection of dual-beam optical tweezers by spatial filtering

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 1 May 2014, In: Review of Scientific Instruments. 85, 5, 053108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Comment on Y. Couder and E. Fort: Single-Particle Diffraction and Interference at a Macroscopic Scale; Phys. Rev. Lett. 97, 154101 (2006)

    Andersen, A., Madsen, J., Reichelt, C., Ahl, S. R., Lautrup, B. E., Ellegaard, Clive Sigurd, Levinsen, Mogens & Bohr, T., 4 Apr 2014, In: arXiv.org: Physics. 1405.0466v1

    Research output: Contribution to journal › Journal article › Research

  15. Published

    Optimizing the radiation therapy dose prescription for pediatric medulloblastoma: Minimizing the life years lost attributable to failure to control the disease and late complication risk

    Brodin, N. P., Vogelius, Ivan R. , Bjork-Eriksson, T., af Rosenschold, P. M., Maraldo, M. V., Aznar, M. C., Specht, Lena & Bentzen, S. M., 1 Apr 2014, In: Acta Oncologica. 53, 4, p. 462-470

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    The impact of involved node, involved field and mantle field radiotherapy on estimated radiation doses and risk of late effects for pediatric patients with Hodgkin lymphoma

    Maraldo, M. V., Jorgensen, M., Brodin, N. P., Aznar, M. C., Vogelius, Ivan R. , Petersen, P. M., Berthelsen, A. K., Christensen, C. B., Hjalgrim, L. L. & Specht, Lena, 1 Apr 2014, In: Pediatric Blood & Cancer. 61, 4, p. 717-722 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Hippocampal sparing radiotherapy for pediatric medulloblastoma: impact of treatment margins and treatment technique

    Brodin, N. P., af Rosenschold, P. M., Blomstrand, M., Kiil-Berthlesen, A., Hollensen, C., Vogelius, Ivan R. , Lannering, B., Bentzen, S. M. & Bjork-Eriksson, T., Apr 2014, In: Neuro-Oncology. 16, 4, p. 594-602

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A Mixed Incoherent Feed-Forward Loop Allows Conditional Regulation of Response Dynamics

    Semsey, S., 12 Mar 2014, In: P L o S One. 9, 3, e91243.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Optical manipulation of single molecules in the living cell

    Nørregaard, K., Jauffred, Liselotte, Berg-Sørensen, K. & Oddershede, L. B., 10 Mar 2014, In: Physical Chemistry Chemical Physics. 16, 25, p. 12614-12624

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Reversible DNA Compaction

    Gonzalez-Perez, Alfredo, 1 Mar 2014, In: Current Topics in Medicinal Chemistry. 14, 6, p. 766-773

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Stress induced telomere shortening: longer life with less mutations?

    Trusina, Ala, 1 Mar 2014, In: B M C Systems Biology. 8, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A specific assay for quantification of human C4c by use of an anti-C4c monoclonal antibody

    Pilely, K., Skjødt, Mikkel-Ole, Nielsen, C., Andersen, T. E., Louise Aabom, A., Vitved, L., Koch, C., Skjødt, K. & Palarasah, Y., Mar 2014, In: Journal of Immunological Methods. 405, p. 87-96 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Asymmetric Segregation of Damaged Cellular Components in Spatially Structured Multicellular Organisms

    Strandkvist, C., Juul, J. S. & Bendtsen, K. M., 13 Feb 2014, In: PLoS ONE. 9, 2, e87917.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Disturbance accelerates the transition from low- to high-diversity state in a model ecosystem

    Botta, F. & Mitarai, Namiko, 4 Feb 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 89, 2, 022704.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states

    Härter, Jan Olaf Mirko, Lövkvist, Cecilia, Dodd, I. B. & Sneppen, Kim, 1 Feb 2014, In: Nucleic Acids Research. 42, 4, p. 2235-2244

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Irregular breathing during 4DCT scanning of lung cancer patients: Is the midventilation approach robust?

    Aznar, M. C., Persson, Gitte F., Kofoed, I. M., Nygaard, D. E. & Korreman, S. S., 1 Feb 2014, In: Physica Medica. 30, 1, p. 69-75

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Modeling positioning uncertainties of prostate cancer external beam radiation therapy using pre-treatment data

    Munck af Rosenschöld, P. M., Desai, N. B., Hun, J., Apte, A., Hunt, M., Kalikstein, A., Mechalakos, J., Happersett, L., Deasy, J. O. & Zelefsky, M. J., 1 Feb 2014, In: Radiotherapy & Oncology. 110, 2, p. 251-255

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    NETWORK INFERENCE WITH HIDDEN UNITS

    Tyrcha, J. & Hertz, John, 1 Feb 2014, In: Mathematical Biosciences and Engineering. 11, 1, p. 149-165

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    THE ROLE OF BILINGUALS IN LANGUAGE COMPETITION

    Heinsalu, E., Patriarca, M. & Leonard, J. L., 1 Feb 2014, In: Advances in Complex Systems. 17, 1, 1450003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Action Potential Collision in Nerves

    Budvytyte, R., Gonzalez-Perez, Alfredo, Mosgaard, L. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 794A-794A

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Are Local Anesthetics and General Anesthetics Different?

    Sasse-Middelhoff, H., Zecchi, K. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 705A-705A

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A supra-cellular model for coupling of bone resorption to formation during remodeling: lessons from two bone resorption inhibitors affecting bone formation differently

    Jensen, P. R., Andersen, T. L., Pennypacker, B. L., Duong, L. T., Engelholm, Lars Henning & Delaissé, J., 10 Jan 2014, In: Biochemical and Biophysical Research Communications. 443, 2, p. 694-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Heat Generation by Irradiated Complex Composite Nanostructures

    Ma, H., Tian, P., Pello, J., Bendix, Poul Martin & Oddershede, L. B., 6 Jan 2014, In: Nano Letters. 14, 2, p. 612-619

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Effect of supercoiling on the λ switch

    Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 1 Jan 2014, In: Bacteriophage. 4, 2, p. 1-5 5 p., e27517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Kinetic models of immediate exchange

    Heinsalu, E. & Patriarca, M., 1 Jan 2014, In: European Physical Journal B. Condensed Matter and Complex Systems. 87, 8, 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Commitment to lysogeny is preceded by a prolonged period of sensitivity to the late lytic regulator Q in bacteriophage Λ

    Svenningsen, Sine Lo & Semsey, S., 2014, In: Journal of Bacteriology. 196, 20, p. 3582-3588 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Disjoint domains interactions framework for hyperelastic simulations

    Bonde, U., Misztal, M. K., Visseq, V. & Erleben, Kenny, 2014. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  38. Published

    Dynamics of Fibril Growth and Feedback Motifs

    Cordsen, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes

    Shah, P., Cho, S. K., Thulstrup, Peter Waaben, Bhang, Y., Ahn, J. C., Choi, S. W., Rørvig-Lund, A. & Yang, S. W., 2014, In: Nanotechnology. 25, 4, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts

    Boomsma, Wouter, Tian, P., Frellsen, J., Ferkinghoff-Borg, J., Hamelryck, Thomas Wim, Lindorff-Larsen, Kresten & Vendruscolo, M., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 38, p. 13852-13857 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Finite element modeling of the vocal folds with deformable interface tracking

    Granados, A., Brunskog, J., Misztal, M. K., Visseq, V. & Erleben, Kenny, 2014, Forum Acusticum. European Acoustics Association, 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  42. Published

    Force spectroscopy of DNA and RNA: structure and kinetics from single-molecule experiments

    Ettlinger, R. B., Sørensen, Michael Askvad & Oddershede, L. B., 2014, Nucleic Acid Nanotechnology. Springer, Vol. 29. p. 23-52 31 p. (Nucleic Acids and Molecular Biology, Vol. 29).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    Forging the flow of the quantum mechanical current in quantum dots

    Tighineanu, P., Stobbe, S. & Lodahl, Peter, 2014, Proceedings of the Nonlinear optics and excitation kinetics in semiconductors, Bremen, Germany. Bremen, Germany

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  44. Published

    Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

    Valentin, J., Andreetta, C., Boomsma, Wouter, Bottaro, S., Ferkinghoff-Borg, J., Frellsen, J., Mardia, K. V., Tian, P. & Hamelryck, Thomas Wim, 2014, In: Proteins: Structure, Function, and Bioinformatics. 82, 2, p. 288-299 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Modeling rises and falls in money addicted social hierarchies

    Dybiec, B., Mitarai, Namiko & Sneppen, Kim, 2014, In: Physica Scripta. 89, 8, 085002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Monte Carlo Methods Development and Applications in Conformational Sampling of Proteins

    Tian, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    Multiphase flow of immiscible fluids on unstructured moving meshes

    Misztal, M. K., Erleben, Kenny, Bargteil, A., Fursund, J., Christensen, B. B., Bærentzen, J. A. & Bridson, R., 2014, In: I E E E Transactions on Visualization and Computer Graphics. 20, 1, p. 4-16 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Oxidative stress and inflammation generated DNA damage by exposure to air pollution particles

    Møller, Peter, Danielsen, P. H., Karottki, D. G., Jantzen, K., Roursgaard, Martin, Klingberg, H., Jensen, Ditte Marie, Christophersen, D. V., Hemmingsen, J. G., Cao, Y. & Loft, Steffen, 2014, In: Mutation Research - Reviews. 762, p. 133-166 34 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Spatial Models and Networks of Living Systems

    Juul, J. S., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  51. Published

    Spatial Structures and Regulation in Biological Systems

    Yde, Pernille, 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis › Research

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