Biocomplexity

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  1. 2013
  2. Published

    A novel complex: a quantum dot conjugated to an active T7 RNA Polymerase

    Eriksen, M., Horvath, P., Sørensen, Michael Askvad, Semsey, S., Oddershede, L. B. & Jauffred, Liselotte, 2013, In: Journal of Nanomaterials. 2013, 9 p., 468105.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Binding of the N-terminal domain of the lactococcal bacteriophage TP901-1 CI repressor to its target DNA: a crystallography, small angle scattering, and nuclear magnetic resonance study

    Frandsen, Kristian Erik Høpfner, Rasmussen, K. K., Jensen, M. R., Hammer, K., Pedersen, M., Poulsen, Jens-Christian Navarro, Arleth, Lise & Lo Leggio, Leila, 2013, In: Biochemistry. 52, 39, p. 6892-6904 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comparative network analysis of preterm vs. full-term infant-mother interactions

    Sipos, L., Mengel, A. B., Kalmar, M., Toth, I., Krishna, S., Jensen, Mogens Høgh & Semsey, S., 2013, In: P L o S One. 8, 6, 10 p., e67183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Decisions on foot-and-mouth disease control informed by model prediction

    Hisham Beshara Halasa, T., Willeberg, P., Christiansen, L. E., Boklund, Anette, Alkhamis, M., Gonzalez-Perez, Alfredo & Enøe, C., 2013, Society for Veterinary Epidemiology and Preventive Medicine. Verheyen, K. L. P., Fourichon, C. & Committee, SVEPM. (eds.). Society for Veterinary Epidemiology and Preventive Medicine, p. 13-22 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. Published

    Optical Investigations of Endothelial Cell Motility

    Rossen, Ninna Struck, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  7. Published

    Optical investigation of intra- and extra-cellular dynamics

    Leijnse, Natascha, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 132 p.

    Research output: Book/Report › Ph.D. thesis

  8. Published

    PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure

    Boomsma, Wouter, Frellsen, J., Harder, T. P., Bottaro, S., Johansson, Kristoffer Enøe, Tian, P., Stovgaard, K., Andreetta, C., Olsson, S., Valentin, J., Antonov, L. D., Christensen, A. S., Borg, M., Jensen, Jan Halborg, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2013, In: Journal of Computational Chemistry. 34, 19, p. 1697-1705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Physicians compliance during maintenance therapy in children with Down syndrome and acute lymphoblastic leukemia

    Bohnstedt, C., Levinsen, Mogens, Rosthøj, Susanne, Zeller, B., Taskinen, M., Hafsteinsdottir, S., Björgvinsdóttir, H., Heyman, M., Schmiegelow, Kjeld & Nordic Society of Pediatric Hematology and Oncology (NOPHO), N. S. O. P. H. A. O. (., 2013, In: Leukemia. 27, 4, p. 866-70 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Regulatory genes

    Semsey, S. & Adhya, S., 2013, Brenner’s online encyclopedia of genetics (Second edition). Maloy, S. & Hughes, K. (eds.). Academic Press, 119 p. 4

    Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review

  11. Published

    Risk-based optimization of photon and proton radiotherapy for pediatric medulloblastoma

    Brodin, N. P., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 45 p.

    Research output: Book/Report › Ph.D. thesis

  12. Published

    Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat

    Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Toxin-Antitoxin Battle in Bacteria

    Cataudella, I., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Ph.D. thesis

  14. Published

    Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

    Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Using Focal Point Intensity Distributions to Track Nanoparticle Positions an Fibril Networks

    Kyrsting, A. H., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis

  16. Published

    Variations in interpulse interval of double action potentials during propagation in single neurons

    Villagran-Vargas, E., Rodriguez-Sosa, L., Hustert, R., Blicher, A., Laub, K. R. & Heimburg, Thomas Rainer, 2013, In: Synapse. 67, 2, p. 68-78 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Voltage-gated lipid ion channels

    Blicher, A. & Heimburg, Thomas Rainer, 2013, In: P L o S One. 8, 6, e65707.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Wildtype and A30P mutant alpha-synuclein form different fibril structures

    Nielsen, S. B., Macchi, F., Raccosta , S., Langkilde, Annette Eva, Giehm, L., Kyrsting, A. H., Svane, A. S. P., Manno, M., Christiansen, G., Nielsen, N. C., Oddershede, L. B., Vestergaard, Bente & Otzen, D., 2013, In: PLOS ONE. 8, 7, e67713.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. 2012
  20. Published

    AXELROD MODEL WITH EXTENDED CONSERVATIVENESS

    Dybiec, B. M., 1 Dec 2012, In: International Journal of Modern Physics C. 23, 12, p. 1250086 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Acyl-homoserine lactone-dependent eavesdropping promotes competition in a laboratory co-culture mode

    Chandler, J. R., Mittler, J. E., Greenberg, E. P. & Heilmann, Silja, 1 Dec 2012, In: ISME Journal. 6, 12, p. 2219-2228 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Circuit architecture explains functional similarity of bacterial heat shock responses

    Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Efficacy of Lower-Body Shielding in Computed Tomography Fluoroscopy-Guided Interventions

    Mahnken, A. H., Sedlmair, M., Ritter, C., Banckwitz, R. & Flohr, T., 1 Dec 2012, In: Cardiovascular and Interventional Radiology. 35, 6, p. 1475-1479 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Interweaving categories: Styles, paradigms, and models

    Winther, Rasmus, 1 Dec 2012, In: Studies in History and Philosophy of Science - Part A. 43, 4, p. 628-639

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Effects of Growth and Mutation on Pattern Formation in Tissues

    Mengel, A. B., Krishna, S., Chakraborty, S., Pigolotti, S., Sekara, V., Semsey, S. & Jensen, Mogens Høgh, 9 Nov 2012, In: P L o S One. 7, 11, p. e48772

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Modular networks of word correlations on Twitter

    Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Validation and Analysis of Forward Osmosis CFD Model in Complex 3D Geometries

    Gruber, M. F., Johnson, C. J., Tang, C. Y., Jensen, Mogens Høgh, Yde, L. & Helix-Nielsen, C., 9 Nov 2012, In: Membranes. 2, 4, p. 764-782

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Models of epigenetics: BI-   and multi-stability in biological systems

    Alsing, A., 1 Nov 2012, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis

  29. Published

    Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression

    Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Force probing of individual molecules inside the living cell is now a reality

    Oddershede, L. B., 17 Oct 2012, In: Nature Chemical Biology. 8, 11, p. 879-886 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Two dimensional bias correction of temperature and precipitation copulas in climate models

    Piani, C. & Härter, Jan Olaf Mirko, 16 Oct 2012, In: Geophysical Research Letters. 39, p. L20401

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Communication dynamics in finite capacity social networks

    Härter, Jan Olaf Mirko, Jamtveit, B. & Mathiesen, Joachim, 15 Oct 2012, In: Physical Review Letters. 109, 16, p. 168701 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Measurements of extreme orientation-dependent temperature increase around an irradiated gold nanorod: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA)

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 10 Oct 2012, In: Proceedings of SPIE. 8458, p. 84581R

    Research output: Contribution to journal › Conference article › Research › peer-review

  34. Published

    Axelrod model: accepting or discussing

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 1 Oct 2012, In: European Physical Journal B. Condensed Matter and Complex Systems. 85, 10, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Genome-Wide Screening of Genes Regulated by DNA Methylation in Colon Cancer Development

    Spisak, S., Kalmar, A., Galamb, O., Wichmann, B., Sipos, F., Péterfia, B., Csabai, I., Kovalszky, I., Semsey, S., Tulssay, Z. & Molnár, B., 1 Oct 2012, In: P L o S One. 7, 10, p. e46215

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Photothermal heating of optically trapped gold nanoparticles quantified using controlled vesicle cargo release: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA )

    Kyrsting, A. H., Bendix, Poul Martin & Oddershede, L. B., 1 Oct 2012, In: Proceedings of SPIE. 8458, p. 84580X

    Research output: Contribution to journal › Conference article › Research › peer-review

  37. Published

    Spreading of multiple epidemics with cross immunization

    Uekermann, F. & Sneppen, Kim, 13 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, Part 2, p. 036108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Limit-cycle oscillations and stable patterns in repressor lattices

    Chakraborty, S., Jensen, Mogens Høgh, Krishna, S., Mengel, A. B., Pigolotti, S., Sekara, V. & Semsey, S., 7 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, p. 031905 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Multistability with a Metastable Mixed State

    Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    The Capacitance and Electromechanical Coupling of Lipid Membranes Close to Transitions: The Effect of Electrostriction

    Heimburg, Thomas Rainer, 5 Sep 2012, In: Biophysical Journal. 103, 5, p. 918-929

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Switching between oscillations and homeostasis in competing negative and positive feedback motifs

    Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Compaction of porous rock by dissolution on discrete stylolites: A one-dimensional model

    Angheluta, L., Mathiesen, Joachim & Aharonov, E., 10 Aug 2012, In: Journal of Geophysical Research: Biogeosciences. 117, p. B08203 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress

    Lerner, A. G., Upton, J., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, Ala, 8 Aug 2012, In: Cell Metabolism. 16, 2, p. 250-264 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus

    Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12828-33 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Science of the United States of America. 109, 31, p. 12828-12833

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Emergence of diversity in a model ecosystem

    Mitarai, Namiko, Mathiesen, Joachim & Sneppen, Kim, 30 Jul 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 86, 1, p. 011929 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Formation of martian araneiforms by gas-driven erosion of granular material

    de Villiers, S., Nermoen, A., Jamtveit, B., Mathiesen, Joachim, Meakin, P. & Werner, S. C., 2 Jul 2012, In: Geophysical Research Letters. 39, p. L13204 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Inducing phase-locking and chaos in cellular oscillators by modulating the driving stimuli

    Jensen, Mogens Høgh & Krishna, S., 4 Jun 2012, In: FEBS Letters. 586, 11, p. 1664-1668

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Fluctuation-dissipation relations under Levy noises

    Dybiec, B. M., Parrondo, J. M. R. & Gudowska-Nowak, E., 1 Jun 2012, In: EPL. 98, 5, p. 50006

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Information spreading and development of cultural centers

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 18 May 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 85, 5, p. 056116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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