- 2009
- Published
Pathway identification by network pruning in the metabolic network of Escherichia coli
Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phase-state dependent current fluctuation in pure lipid membranes
Wunderlich, B., Leirer, C. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4592-4597 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical properties of biological membranes. Chapter for "Encyclopedia of Applied Biophysics"
Heimburg, Thomas Rainer, 2009, Wiley. 593 p.Research output: Book/Report › Book › Research
- Published
Quantification of droplet deformation by electromagnetic trapping
Møller, P. C. F. & Oddershede, L. B., 2009, In: EPL. 88, p. 48005 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantification of nano-scale intermembrane contact areas using fluorescence resonance energy transfer
Bendix, Poul Martin, Pedersen, M. S. & Stamou, Dimitrios, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 30, p. 12341-12346 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantifying and pinpointing sources of noise in optical tweezers experiments
Czerwinski, F., Richardson, A. C., Selhuber-Unkel, C. & Oddershede, L. B., 2009, Proceedings of SPIE, vol.7400, San Diego: Optical Trapping and Optical Micromanipulation VI. SPIE - International Society for Optical Engineering, Vol. 7400. p. 740004-740009 9 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Quantifying noise in optical tweezers by Allan Variance
Czerwinski, F., Richardson, A. C. & Oddershede, L. B., 2009, In: Optics Express. 17, 15, p. 13255-13269 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reinforced communication and social navigation generate groups in model networks
Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli
Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Repressor lattice: feedback, commensurability, and dynamical frustration
Jensen, Mogens Høgh, Krishna, S. & Pigolotti, S., 2009, In: Physical Review Letters. 103, 11, p. 118101Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Scaling properties of European research units
Jamtveit, B., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 32, p. 13160-13163 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical physics of pairwise probability models
Roudi, Y., Aurell, E. & Hertz, John, 2009, In: Frontiers in Computational Neuroscience. 3, 22, p. (art 22) 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Symbolic dynamics of biological feedback networks
Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2009, In: Physical Review Letters. 102, 8, p. 088701Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Texture of the upper 1000 m in the GRIP and NorthGRIP ice cores
Svensson, Anders, Durand, G., Mathiesen, Joachim, Persson, A. & Dahl-Jensen, Dorthe, 2009, Low Temperature Science Supplement Issue: Physics of Ice Core Records II. Hondoh, T. (ed.). Institute of Low Temperature Science, Hokkaido University, Sapporo Japan, Vol. 68. p. 107-113 7 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
The influence of vesicle size and composition on alpha-synuclein structure and stability
Kjær, L., Giehm, L., Otzen, D. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 7, p. 2857-2870 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The temperature dependence of lipid membrane permeability, its quantized nature, and the influence of anesthetics
Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4581-4591 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations
Wodzinska, K., Blicher, A. & Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Themed issue: membrane biophysics
Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3145-3147 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thermodynamics and roughening of solid-solid interfaces
Angheluta, L., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 3, Part 1, p. 031601Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Towards a thermodynamic theory of nerve pulse propagation
Andersen, S. S., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2009, In: Progress in Neurobiology. 88, 2, p. 104-113 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Variety in intracellular diffusion during the cell cycle
Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Vesicles in electric fields: some novel aspects of membrane behavior
Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Why do phage play dice?
Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Rationalizing translation attenuation in the network architecture of the unfolded protein response
Trusina, Ala, Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Role of MOR and the CI operator sites on the genetic switch temperate bacteriophage TP901-1
Pedersen, M. & Hammer, K., 9 Dec 2008, In: Journal of Molecular Biology. 384, 3, p. 577-589Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Translation attenuation mechanism in unfolded protein response
Trusina, Ala, Papa, F. & Tang, C., 1 Dec 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (eds.). p. 83-90 8 p. (NATO Science for Peace and Security Series B: Physics and Biophysics).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions
Merksamer, P., Trusina, Ala & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamical analysis on gene activity in the presence of repressors and an interfering promoter
Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Missing levels in acoustic resonators
Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, Clive Sigurd, 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Amplitude equation and long-rang interactions in underwater sand ripples in one dimension
Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Faf1 is expressed during neurodevelopment and is involved in Apaf1-dependent caspase-3 activation in proneural cells
De Zio, D., Ferraro, E., D'Amelio, M., Simoni, V., Bordi, M., Soroldoni, D., Berghella, L., Meyer, B. I. & Cecconi, F., Jun 2008, In: Cellular and Molecular Life Sciences. 65, 11, p. 1780-1790 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A quantitative analysis of contractility in active cytoskeletal protein networks
Bendix, Poul Martin, Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182Research output: Contribution to journal › Journal article › Research › peer-review
- Published
One hub-one process: a tool based view on regulatory network topology
Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elasticity with arbitrarily shaped inhomogeneity
Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations
Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cost and capacity of signaling in the Escherichia coli proetin reaction network
Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A quantitative analysis of indicators of scientific performance
Lehmann, S., Jackson, Andrew D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Brownian Warps for Non-Rigid Registration
Nielsen, Mads, Johansen, P., Jackson, Andrew D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of radiotracers for Vps10p domain (neurotensin-3) receptors
Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, Albert, 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dimensions, maximal growth sites, and optimization in the dielectric breakdown model
Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamical genetic regulation
Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).Research output: Book/Report › Book › Research › peer-review
- Published
Efficient optical trapping and visualization of silver nano-particles
Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486–1491 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Efficient optical trapping and visualization of silver nanoparticles
Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486-1491 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene duplication models for directed networks with limits on growth
Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1
Pedersen, M., Lo Leggio, Leila, Grossmann, J. G., Larsen, Sine & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Komolgorov scaling from random force fields
Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy
Oliynyk, V., Jäger, M., Heimburg, Thomas Rainer, Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes
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