Biocomplexity

  1. 2022
  2. Published

    Comprehensive analysis of gene regulatory dynamics, fitness landscape, and population evolution during sexual reproduction

    Okubo, K. & Kaneko, Kunihiko, 14 Oct 2022, In: New Journal of Physics. 24, 10, 13 p., 103017.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database

    Tang, Q., Ren, W., Wang, J. & Kaneko, Kunihiko, 7 Oct 2022, In: Molecular Biology and Evolution. 39, 10, 13 p., msac197.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    The effect of stretching on nerve excitability

    Heimburg, Thomas Rainer, 7 Oct 2022, In: Human Movement Science. 86, 10 p., 103000.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Differentiation of closely related mineral phases in Mars atmosphere using frequency domain laser-induced plasma acoustics

    Alvarez-Llamas, C., Purohit, P., Moros, J. & Laserna, J., 15 Sep 2022, In: Analytica Chimica Acta. 1226, 8 p., 340261.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Spatial heterogeneity affects predictions from early-curve fitting of pandemic outbreaks: a case study using population data from Denmark

    Heltberg, Mathias Spliid, Michelsen, Christian Buus, Martiny, E. S., Christensen, L. E., Jensen, Mogens Høgh, Halasa, T. & Petersen, Troels Christian, 14 Sep 2022, In: Royal Society Open Science. 9, 9, 9 p., 220018.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    A systematic evaluation on the impact of sample-related and environmental factors in the analytical performance of acoustic emission from laser-induced plasmas

    Bosakova, M., Purohit, P., Alvarez-Llamas, C., Moros, J., Novotny, K. & Laserna, J., 8 Sep 2022, In: Analytica Chimica Acta. 1225, 9 p., 340224.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

    Nielsen, Bjarke Frost, Eilersen, Andreas Thomas, Simonsen, L. & Sneppen, Kim, 2 Sep 2022, In: Epidemics. 40, 7 p., 100613.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Spatiotemporal NF-kappa B dynamics encodes the position, amplitude, and duration of local immune inputs

    Son, M., Frank, T., Holst-Hansen, T., Wang, A. G., Junkin, M., Kashaf, S. S., Trusina, Ala & Tay, S., 2 Sep 2022, In: Science Advances. 8, 35, 14 p., 6240.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    The geometry of evolved community matrix spectra

    Lastad, S. B. & Härter, Jan Olaf Mirko, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14668.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Tumor spheroids accelerate persistently invading cancer cells

    Audoin, M., Sogaard, M. T. & Jauffred, Liselotte, 29 Aug 2022, In: Scientific Reports. 12, 1, 11 p., 14713.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming

    Perera Pérez, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, S., S. Monteiro, Rita, Trusina, Ala & Brickman, Joshua Mark, 15 Aug 2022, In: eLife. 11, 23 p., e78967.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network

    Okubo, K., Kaneko, Kunihiko & Nelson, K. E. (ed.), 29 Jul 2022, In: PNAS Nexus. 1, 3, 12 p., 097.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Onset of turbulence in channel flows with scale-invariant roughness

    Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Chemophoresis engine: A general mechanism of ATPase-driven cargo transport

    Sugawara, T., Morozov, A. V. (ed.) & Kaneko, Kunihiko, 25 Jul 2022, In: PLOS Computational Biology. 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Nematic order condensation and topological defects in inertial active nematics

    Saghatchi, R., Yildiz, M. & Doostmohammadi, Amin, 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Self-sustained oscillations of active viscoelastic matter

    Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Bridging microscopic cell dynamics to nematohydrodynamics of cell monolayers

    Ardaševa, Aleksandra, Mueller, R. & Doostmohammadi, Amin, 29 Jun 2022, In: Soft Matter. 18, 25, p. 4737-4746 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Pancreatic alpha and beta cells are globally phase-locked

    Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Temperature Controls Onset and Period of NF-kappa B Oscillations and can Lead to Chaotic Dynamics

    Heltberg, Mathias Spliid, von Borries, M., Bendix, Poul Martin, Oddershede, L. B. & Jensen, Mogens Høgh, 20 Jun 2022, In: Frontiers in Cell and Developmental Biology. 10, 14 p., 910738.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Curvature strains as a global orchestrator of morphogenesis

    Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    The thermodynamic soliton theory of the nervous impulse and possible medical implications

    Heimburg, Thomas Rainer, 28 May 2022, In: Progress in Biophysics & Molecular Biology. 173, p. 24-35 12 p.

    Research output: Contribution to journalReviewResearchpeer-review

  24. Published

    Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations

    Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Heterogeneity in testing for infectious diseases

    Berrig, C., Andreasen, V. & Nielsen, Bjarke Frost, 18 May 2022, In: Royal Society Open Science. 9, 5, 12 p., 220129.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Quadrupolar active stress induces exotic patterns of defect motion in compressible active nematics

    Sultan, S. A., Nejad, M. R. & Doostmohammadi, Amin, 7 May 2022, In: Soft Matter. 18, p. 4118-4126 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    The Diurnal Path to Persistent Convective Self-Aggregation

    Jensen, Gorm Gruner, Fievet, R. & Härter, Jan Olaf Mirko, 5 May 2022, In: Journal of Advances in Modeling Earth Systems. 14, 5, 16 p., e2021MS002923.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Foregut organ progenitors and their niche display distinct viscoelastic properties in vivo during early morphogenesis stages

    Dzementsei, A., Farhangibarooji, Younes, Ober, Elke & Oddershede, L. B., 29 Apr 2022, In: Communications Biology. 5, 1, 11 p., 402.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Distinct Survival, Growth Lag, and rRNA Degradation Kinetics during Long-Term Starvation for Carbon or Phosphate

    Himeoka, Y., Gummesson, Bertil, Sørensen, Michael Askvad, Svenningsen, Sine Lo & Mitarai, Namiko, 20 Apr 2022, In: mSphere. 7, 3, 12 p., e01006-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images

    Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, Amin & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Protection of bacteriophage-sensitive Escherichia coli by lysogens

    Brown, Stanley, Mitarai, Namiko & Sneppen, Kim, 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Self-organized quantization and oscillations on continuous fixed-energy sandpiles

    Niehues, J., Jensen, Gorm Gruner & Härter, Jan Olaf Mirko, 31 Mar 2022, In: Physical Review E. 105, 3, 13 p., 034314.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Filopodia rotate and coil by actively generating twist in their actin shaft

    Leijnse, N., Farhangibarooji, Younes, Arastoo, M. R., Sonder, S. L., Verhagen, B., Wullkopf, L., Erler, Janine, Semsey, S., Nylandsted, J., Oddershede, L. B., Doostmohammadi, Amin & Bendix, Poul Martin, 28 Mar 2022, In: Nature Communications. 13, 1, 16 p., 1636.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Chemical Pretreatment Activated a Plastic State Amenable to Direct Lineage Reprogramming

    Yang, Z., Xioachan, X., Gu, C., Nielsen, Alexander Valentin, Chen, G., Guo, F., Tang, C. & Zhao, Y., 25 Mar 2022, In: Frontiers in Cell and Developmental Biology. 10, 16 p., 865038.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Spatial model of Ebola outbreaks contained by behavior change

    Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Unifying polar and nematic active matter: Emergence and co-existence of half-integer and full-integer topological defects

    Amiri, A., Mueller, R. & Doostmohammadi, Amin, 4 Mar 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 9, 12 p., 094002.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Copulas for hydroclimatic analysis: A practice-oriented overview

    Tootoonchi, F., Sadegh, M., Härter, Jan Olaf Mirko, Raty, O., Grabs, T. & Teutschbein, C., Mar 2022, In: Wiley Interdisciplinary Reviews: Water. 9, 2, 28 p., 1579.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Detecting limit cycles in stochastic time series

    Martiny, E. S., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 17 Feb 2022, In: Physica A: Statistical Mechanics and its Applications. 605, 10 p., 127917.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    A scaling law of multilevel evolution: how the balance between within- and among-collective evolution is determined

    Takeuchi, N., Mitarai, Namiko & Kaneko, Kunihiko, 4 Feb 2022, In: Genetics. 220, 2, 9 p., 182.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Physics of liquid crystals in cell biology

    Doostmohammadi, Amin & Ladoux, B., Feb 2022, In: Trends in Cell Biology. 32, 2, p. 140-150 11 p.

    Research output: Contribution to journalReviewResearchpeer-review

  41. Published

    Use of compliant actuators for throwing rigid projectiles

    Giombini, G., Mathiesen, Joachim, D'Angelo, C., Argentina, M., Raufaste, C. & Celestini, F., Feb 2022, In: Physical Review E. 105, 2, 11 p., 025001.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Biophysical Modeling of Dopaminergic Denervation Landscapes in the Striatum Reveals New Therapeutic Strategy

    Heltberg, Mathias Spliid, Awada, H. N., Lucchetti, Alessandra, Jensen, Mogens Høgh, Dreyer, J. K. & Rasmussen, R. N., 2022, In: eNeuro. 9, 2, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Chunyun versus lockdown

    Lehmann, S., 2022, In: National Science Review. 9, 1, 2 p., nwab178.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Computational tools for identifying and relating cell-types in development and stem-cell engineering

    Nielsen, Alexander Valentin, 2022, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/ReportPh.D. thesisResearch

  45. Published

    Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa

    Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Distinct impacts of polar and nematic self-propulsion on active unjamming

    Venkatesh, V., Mondal, C. & Doostmohammadi, Amin, 2022, In: Journal of Chemical Physics. 157, 16, 11 p., 164901.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems

    Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, Kim & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Executive attention control impairments and social anxiety symptoms in children

    Reinholdt-Dunne, M. L., Blicher, A., Rinck, M. & Klein, A., 2022, In: Journal of Experimental Psychopathology. 13, 2, 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse

    Svenningsen, Mikkel Skjoldan, Svenningsen, Sine Lo, Sørensen, Michael Askvad & Mitarai, Namiko, 2022, In: Life Science Alliance. 5, 2, 9 p., e202101076.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Extracting the interdisciplinary specialty structures in social media data-based research: A clustering-based network approach

    Fan, Yangliu, Lehmann, S. & Blok, Anders, 2022, In: Journal of Informetrics. 16, 3, 18 p., 101310.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Fluctuation-induced dynamics of nematic topological defects

    Bonn, Lasse Frederik, Ardaševa, Aleksandra, Mueller, R., Shendruk, T. N. & Doostmohammadi, Amin, 2022, In: Physical Review E. 106, 10 p., 044706.

    Research output: Contribution to journalJournal articleResearchpeer-review

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