Biocomplexity

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  1. 2004
  2. Published

    Quantifying the benefits of translation regulation in the unfolded protein response

    Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Pattern formation of underwater sand ripples with a skewed drive

    Bundgaard, F., Ellegaard, Clive Sigurd, Scheibye-Knudsen, K., Bohr, T. & Sams, T., 1 Dec 2004, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 70, 6, 066207.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. 2005
  5. Published

    Domain size and fluctuations at domain interfaces in lipid mixtures

    Seeger, H., Fidorra, M. & Heimburg, Thomas Rainer, 2005, In: Biocolloids. 219, p. 85-96

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Expanding the optical trapping range of gold nanoparticles

    Bendix, Poul Martin, Bhatia, V. K., Harrit, N. & Oddershede, L. B., 2005, In: Nano Letters. 5, 10, p. 1937-1942 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Networks and Cities: An Information Perspective

    Rosvall, M., Trusina, Ala, Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review Letters. 94, 2, 028701.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Novel optical and statistical methods reveal colloid-wall interactions inconsistent with DLVO and Lifshitz theories

    Bendix, Poul Martin, Dreyer, J. K. K., Ferkinghoff-Borg, J. & Oddershede, L. B., 2005, In: Journal of Colloid and Interface Science. 287, 2, p. 561-571

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Optical trapping inside living organisms

    Bendix, Poul Martin & Oddershede, L. B., 2005, In: SPIE Proceedings. 5930, 9 p., 593003.

    Research output: Contribution to journal › Conference article › Research › peer-review

  10. Published

    Spiky oscillations in NF-KB signalling

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The stability of solitons in biomembranes and nerves

    Lautrup, B., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2005, In: arXiv.org: Physics. arXiv:Physics/0510106, 7 p.

    Research output: Contribution to journal › Journal article › Research

  12. Published

    Vild med lys

    Bendix, Poul Martin, Madsen, T. W. & Oddershede, L. B., 2005, In: Kvant. 2005, 4, p. 14-17 4 p.

    Research output: Contribution to journal › Journal article › Communication

  13. Published

    Void formation and roughening in slow fracture

    Afek, I., Bouchbinder, E., Katzav, E., Mathiesen, Joachim & Procaccia, I., 1 Jan 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 71, 6, 066127.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Hide-and-seek on complex networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Mar 2005, In: EPL. 69, 5, p. 853-859

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Universality of rescaled curvature distributions

    Pato, M., Schaadt, K., Tufaile, A., Ellegaard, Clive Sigurd, Nogueira, T. & Sartorelli, J., 1 Mar 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 3, p. 037201

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow

    Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Branching instabilities in rapid fracture: Dynamics and geometry

    Bouchbinder, E., Mathiesen, Joachim & Procaccia, I., 1 May 2005, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 71, 5, 056118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Measuring information networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Jun 2005, In: Pramana – Journal of Physics. 64, 6, p. 1121-1125

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Coherent pion production in heavy ion charge exchange reactions.

    Boyard, J., Augustyniak, W., Dahl, R., Drews, M., Ellegaard, Clive Sigurd, Farhi, L., Gaarde, C., Hennino, T., Jensen, J., Jourdain, J., Kagarlis, M., Kunne, R., Larsen, J., Radvadyi, P., Ramstein, B., Roy-Stephan, M. & Zupranski, P., 13 Jun 2005, In: Nuclear Physics A: Nuclear and Hadronic Physics. 755, p. 507C-510C

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Sand ripples under water with complex wave motion

    Scheibye-Knudsen, K., Ellegaard, Clive Sigurd, Bundgaard, F. & Sams, T., 1 Jul 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, 1, 016209.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    SPES4-pi: installation for exclusive study of nuclear reactions

    Alkhazov, GD., Astashin, VV., Atamanchuk, AG., Augustyniak, W., Bachelier, D., Baublis, VV., Boivin, M., Boyard, JL., Clavelin, JF., Courtat, P., Denoit, M., Douet, R., Ellegaard, C., Farhi, L., Gaarde, C., Gacougnolle, R., Gerzenstein, VY., Golovtsov, VL., Golubev, VV., Hennino, T. & 31 others, Jourdain, J., Khanzadeev, A., Komkov, B., Kravtsov, A., Kudin, L., Kunne, R., Larsen, J., Lebon, S., Malinina, L., Maroni, A., Martin, J., Morsch, H., Mylnikov, V., Orischin, E., Osterlund, M., Poux, V., Prokofiev, A., Radvanyi, P., Ramstein, B., Razmyslovich, B., Roy-Stephan, M., Samsonov, V., Skowron, R., Smirnov, I., Strokovsky, E., Tkach, I., Vikhrov, V., Volkov, S., Vorobyov, A., Zhdanov, A. & Zupranski, P., 11 Oct 2005, In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 551, 2-3, p. 290-311

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A certain localization effect in coupled systems and messages from the crystal sphere

    Guhr, T., Gronqvist, J., Søndergaard, N., Oxborrow, M., Schaadt, K. & Ellegaard, Clive Sigurd, 23 Oct 2005, In: AIP Conference Proceedings. 777, p. 160-170

    Research output: Contribution to journal › Conference article › Research › peer-review

  23. 2006
  24. Published

    A communication perspective on network topologies

    Sneppen, Kim & Rosvall, M., 2006, In: Progress of Theoretical Physics. Supplement. p. 103-118

    Research output: Contribution to journal › Conference article › Research › peer-review

  25. Published

    Analytical approach to continuous and intermittent bottleneck flows

    Helbing, D., Johansson, A., Mathiesen, Joachim, Jensen, Mogens Høgh & Hansen, A. C., 2006, In: Physical Review Letters. 97, 16, p. 168001 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Combining confocal microscopy with precise force-scope optical tweezers

    Hansen, T. M., Seyyed Reihani, S. N. & Oddershede, L. B., 2006, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. p. 163-173

    Research output: Contribution to journal › Conference article › Research

  27. Published

    Diffusion, fragmentation and merging process in ice crystals, alpha helices and other systems

    Ferkinghoff-Borg, J., Jensen, Mogens Høgh, Olesen, Poul & Mathiesen, Joachim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 61-70

    Research output: Contribution to journal › Conference article › Research › peer-review

  28. Published

    Functional alignment of regulatory networks: a study of temperate phages

    Trusina, Ala, Sneppen, Kim, Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, In: PLoS Computational Biology. 1, 7, p. 599-603

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Longevity of orders in related to the longevity of their constituent genera rather then genus richness

    Bornholdt, S., Sneppen, Kim & Westphal, H., 2006, In: Theory in Biosciences. 128, 2, p. 75-83 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Low degree metabolites explain essential reactions and enhance modularity in biological networks

    Samal...[et al.], A. & Krishna, S., 2006, In: BMC Bioinformatics. 7, 118

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Network models of phage-bacteria coevolution

    Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Optimal investment horizons for stocks and markets

    Johansen, A., Simonsen, I. & Jensen, Mogens Høgh, 2006, In: Physica A: Statistical Mechanics and its Applications. 1, p. 64-67

    Research output: Contribution to journal › Conference article › Research › peer-review

  33. Published

    Quantitative approach to small-scale nonequilibrium systems

    Dreyer, J. K., Berg-Sørensen, K. & Oddershede, L., 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 73, 5 Pt 1, p. 051110

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Response varibility in balanced cortical networks

    Lerchner..[et al.], A., Ursta, C. & Hertz, John, 2006, In: Neural Computation. 18, 3, p. 634-659

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Structure and communication in complex networks

    Sneppen, Kim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 1-28

    Research output: Contribution to journal › Conference article › Research › peer-review

  36. Published

    Structure and function of negative feedback loops at the interface of genetic and metabolic networks

    Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Sørensen, K. B., 2006, In: Computer Physics Communications. 175, 18, p. 572-573 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    tweezercalib 2.0: faster version of Matlab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. & Berg-Sørensen, K., 2006, In: Computer Physics Communications. 174, 6, p. 518-520 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Broad distribution of stick-slip events in slowly sheared granular media: Table-top production of a Gutenberg-Richter-like distribution

    Bretz, M., Zaretzki, R., Field, S., Mitarai, Namiko & Nori, F., 2 Jun 2006, In: EPL. 74, 6, p. 1116-1122

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Wet granular materials

    Mitarai, Namiko & Nori, F., 30 Jun 2006, In: Advances in Physics. 55, 1-2, p. 1-45 45 p.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    Degree landscapes in scale-free networks

    Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, Kim & Trusina, Ala, Sep 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Survey of scaling surfaces

    Hansen, A. & Mathiesen, Joachim, 5 Oct 2006, Modelling Critical and Catastrophic Phenomena in Geoscience: A Statistical Physics Approach. Springer, Vol. 705. p. 93-110 18 p. (Lecture Notes in Physics, Vol. 705).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    Tweezercalib 2.1: faster version of MatLab package for precise calibration of optical tweezers

    Bendix, Poul Martin, Tolic-Nørrelykke, I. M., Flyvbjerg, H. K. & Berg-Sørensen, K., 15 Oct 2006, In: Computer Physics Communications. 174, 8, p. 572-573

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. 2007
  45. Published

    A universal power law and proportionate change process characterize the evolution of metabolic networks

    Singh, S., Samal, A., Giri, V. & Krishna, S., 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 1, p. 75-80

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Calibration of trapping force and response function of optical tweezers in viscoelastic media

    Fischer, M. & Berg-Sørensen, K., 2007, In: Journal of Optics A: Pure and Applied Optics (Print Edition). 9, 8, Sp. Iss. SI, p. S239-S250

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Cellers nano-mekanik

    Berg-Sørensen, K., Fisher, M., Bendix, Poul Martin & Oddershede, L. B., 2007, In: Kvant. 2007, 1, p. 4-6 3 p.

    Research output: Contribution to journal › Journal article › Communication

  48. Published

    Combinatorics of feedback in cellular uptake and metabolism of small molecules

    Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819

    Research output: Contribution to journal › Conference article › Research › peer-review

  49. Published

    Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting.

    Hansen, T. M., Reihani, S. N. S., Oddershede, L. B. & Sørensen, Michael Askvad, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 14, p. 5830-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Efficient degradation and expression prioritization with small RANs

    Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Extending the lateral trapping force of optical tweezers - art. no. 664420

    Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2007, PROCEEDINGS OF THE SOCIETY OF PHOTO-OPTICAL INSTRUMENTATION ENGINEERS: OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION IV. SPIE - International Society for Optical Engineering, Vol. 6644. p. 64420-64420

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  52. Published

    Fear and its implications for stock markets

    Simonsen, I., Ahlgren, P. H., Jensen, Mogens Høgh, Danangelo, R. & Sneppen, Kim, 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 2, p. 153-158

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Frustration driven stock market dynamics: Leverage effect and asymmetry

    Heden Ahlgren, P. T., Jensen, Mogens Høgh, Simonsen, I., Donangelo, R. & Sneppen, Kim, 2007, In: Physica A: Statistical Mechanics and its Applications. 383, 1, p. 1-4 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Melting of single lipid components in binary lipid mixtures: A comparison between FTIR spectroscopy, DSC and Monte Carlo simulations

    Fidorra, M., Heimburg, Thomas Rainer & Seeger, H. M., 2007, In: arXiv.org: Physics. arXiv:0712.0064, 12 p.

    Research output: Contribution to journal › Journal article › Research

  55. Published

    Modeling the two-hybrid detector: Experimental bias on protien interaction networks

    Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Modelling transcriptional interference and DNA looping in gene regulation

    Dodd, I. B., Shearwin, K. & Sneppen, Kim, 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Network formation of DMPG dispersions studied by light scattering, SANS, SAXS and calorimetry

    Preu, J., Gutberiet, T. & Heimburg, Thomas Rainer, 2007, In: Chemistry and Physics of Lipids. Suppl. S, p. S40-S40

    Research output: Contribution to journal › Conference article › Research › peer-review

  58. Published

    Networks and our limited information horizon

    Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Pores in artificial membranes composed of binary lipid mixtures

    Fidorra, M., Winterhalter, M., Bagatolli, L. A. & Heimburg, Thomas Rainer, 2007, In: Biophysical Journal. p. 610A-610A

    Research output: Contribution to journal › Conference article › Research › peer-review

  60. Published

    Pulses and chaos: dynamical response in a simple genetic

    Fonslet, J., Rud-Petersen, K., Krishna, S. & Jensen, Mogens Høgh, 2007, In: International Journal of Modern Physics B. 21, 23-24, p. 4083-4090

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Signal integration in the galactose network of Escherichia coli

    Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Spreading out of perturbations in reversible reaction networks

    Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Theoretical analysis of epigenetic cell memory by nucleosome modification

    Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model

    Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress

    Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Mutational analysis of the activator of late transcription, alt, in the lactococcal bacteriophage TP901-1

    Pedersen, M. & Hammer, K., 27 Oct 2007, In: Archives of Virology. 152, 2, p. 305-320 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. 2008
  68. Published

    A quantitative analysis of indicators of scientific performance

    Lehmann, S., Jackson, Andrew D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Brownian Warps for Non-Rigid Registration

    Nielsen, Mads, Johansen, P., Jackson, Andrew D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Development of radiotracers for Vps10p domain (neurotensin-3) receptors

    Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, Albert, 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Dimensions, maximal growth sites, and optimization in the dielectric breakdown model

    Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Dynamical genetic regulation

    Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

    Research output: Book/Report › Book › Research › peer-review

  73. Published

    Efficient optical trapping and visualization of silver nano-particles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486–1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Efficient optical trapping and visualization of silver nanoparticles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486-1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Gene duplication models for directed networks with limits on growth

    Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1

    Pedersen, M., Lo Leggio, Leila, Grossmann, J. G., Larsen, Sine & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Komolgorov scaling from random force fields

    Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy

    Oliynyk, V., Jäger, M., Heimburg, Thomas Rainer, Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Mode locking of a driven Bose-Einstein condensate

    Nicolin, A., Carretero-González, R. & Jensen, Mogens Høgh, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Non-harmonic potential of a single beam optical trap

    Richardson, A. C., S. Reihani, S. N. & Oddershede, L. B., 2008, In: Optics Express. 16, 20, p. 15709-15717 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria

    Rasmussen, M. B., Oddershede, L. B. & Siegumfeldt, H., 2008, In: Applied and Environmental Microbiology. 74, 8, p. 2441-2446

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Optical tweezers techniques

    Oddershede, L. B., 2008, Handbook of Molecular Biophysics: Methods and Applications. Bohr, H. G. (ed.). 1. ed. ed. Berlin: Wiley-VCH, Vol. Chapter 6. p. Chapter 6

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  83. Published

    Oscillation patterns in negative feedback loops

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2008, In: Proceedings of the National Academy of Science of the United States of America. 104, 16, p. 6533-6537

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Quantitative force calibration in viscoelastic media and living cells: 32nd Congress of the Federation of European Biochemical Societies. July 07-12 Vienna, Austria

    Berg-Sørensen, K., Fischer, M., Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2008, In: FEBS Journal. 274, Suppl. 1, p. 299-299

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Quantitative optical trapping of single gold nanorods

    Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Resonant energy transfer in Bose-Einstien condensates

    Nicolin, A., Jensen, Mogens Høgh, Thomsen, Jan Westenkær & Carretero-Gonxález, R., 2008, In: Physica D : Non-linear Phenomena. 237, 19, p. 2476-2481

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Signalling and Feedback in Biological Networks

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  90. Published

    Single-file dynamics with different diffusion constants

    Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence

    Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Stability of a sonoluminescing nitrogen bubble in chilled water

    Holzfuss, J. & Levinsen, Mogens, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 4, p. 046304 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    The temperature depencence  and quantized nature of lipid membrane permeability

    Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, Thomas Rainer, 2008, In: Biophysical Journal. 96, 3, p. 160a-

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Thermodynamics of the nervous impulse

    Jackson, Andrew D. & Heimburg, Thomas Rainer, 2008, Structure and dynamics of membranous interfaces. Nag, K. (ed.). New York: Wiley, p. 317-340 24 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  95. Published

    Three-dimensional optical control of individual quantum dots

    Jauffred, Liselotte, Richardson, A. C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 10, p. 3376-3380

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Validation of calibration method in complex media

    Fischer, M., Richardson, A. C., Seyyed Reihani, S. N., Oddershede, L. B. & Berg-Sørensen, K., 2008, Proceedings, SPIE. SPIE - International Society for Optical Engineering, Vol. 7038. p. 703822

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  97. Published

    The cost and capacity of signaling in the Escherichia coli proetin reaction network

    Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

    Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Elasticity with arbitrarily shaped inhomogeneity

    Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    A quantitative analysis of contractility in active cytoskeletal protein networks

    Bendix, Poul Martin, Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

    Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Faf1 is expressed during neurodevelopment and is involved in Apaf1-dependent caspase-3 activation in proneural cells

    de Zio, Daniela, Ferraro, E., D'Amelio, M., Simoni, V., Bordi, M., Soroldoni, D., Berghella, L., Meyer, B. I. & Cecconi, F., Jun 2008, In: Cellular and Molecular Life Sciences. 65, 11, p. 1780-1790 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  104. Published

    The generation of promoter-mediated transcriptional noise in bacteria

    Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

    Research output: Contribution to journal › Journal article › Research › peer-review

  105. Published

    Amplitude equation and long-rang interactions in underwater sand ripples in one dimension

    Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.

    Research output: Contribution to journal › Journal article › Research › peer-review

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