- 2022
- Published
Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network
Okubo, K., Kaneko, Kunihiko & Nelson, K. E. (ed.), 29 Jul 2022, In: PNAS Nexus. 1, 3, 12 p., 097.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Onset of turbulence in channel flows with scale-invariant roughness
Linga, G., Angheluta, L. & Mathiesen, Joachim, 29 Jul 2022, In: Physical Review Research. 4, 3, 6 p., 033086.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chemophoresis engine: A general mechanism of ATPase-driven cargo transport
Sugawara, T., Morozov, A. V. (ed.) & Kaneko, Kunihiko, 25 Jul 2022, In: PLOS Computational Biology. 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nematic order condensation and topological defects in inertial active nematics
Saghatchi, R., Yildiz, M. & Doostmohammadi, Amin, 25 Jul 2022, In: Physical Review E. 106, 1, 9 p., 014705.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-sustained oscillations of active viscoelastic matter
Plan, E. L. C. V. I. M., Le Thi, H., Yeomans, J. M. & Doostmohammadi, Amin, 8 Jul 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 27, 11 p., 275601.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bridging microscopic cell dynamics to nematohydrodynamics of cell monolayers
Ardaeva, Aleksandra, Mueller, R. & Doostmohammadi, Amin, 29 Jun 2022, In: Soft Matter. 18, 25, p. 4737-4746 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pancreatic alpha and beta cells are globally phase-locked
Ren, H., Li, Y., Han, C., Yu, Y., Shi, B., Peng, X., Wu, S., Yang, X., Sneppen, Kim, Chen, L., Tang, C. & Zhang, T., 28 Jun 2022, In: Nature Communications. 13, 1, 16 p., 3721.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temperature Controls Onset and Period of NF-kappa B Oscillations and can Lead to Chaotic Dynamics
Heltberg, Mathias Spliid, von Borries, M., Bendix, Poul Martin, Oddershede, L. B. & Jensen, Mogens Høgh, 20 Jun 2022, In: Frontiers in Cell and Developmental Biology. 10, 14 p., 910738.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Curvature strains as a global orchestrator of morphogenesis
Kirkegaard, Julius Bier, 31 May 2022, In: Physical Review Research. 4, 2, 10 p., 023171.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The thermodynamic soliton theory of the nervous impulse and possible medical implications
Heimburg, Thomas Rainer, 28 May 2022, In: Progress in Biophysics & Molecular Biology. 173, p. 24-35 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations
Kirkegaard, Julius Bier, 21 May 2022, In: BMC Bioinformatics. 23, 1, 9 p., 191.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterogeneity in testing for infectious diseases
Berrig, C., Andreasen, V. & Nielsen, Bjarke Frost, 18 May 2022, In: Royal Society Open Science. 9, 5, 12 p., 220129.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quadrupolar active stress induces exotic patterns of defect motion in compressible active nematics
Sultan, S. A., Nejad, M. R. & Doostmohammadi, Amin, 7 May 2022, In: Soft Matter. 18, p. 4118-4126 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Diurnal Path to Persistent Convective Self-Aggregation
Jensen, Gorm Gruner, Fievet, R. & Härter, Jan Olaf Mirko, 5 May 2022, In: Journal of Advances in Modeling Earth Systems. 14, 5, 16 p., e2021MS002923.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Foregut organ progenitors and their niche display distinct viscoelastic properties in vivo during early morphogenesis stages
Dzementsei, A., Farhangibarooji, Younes, Ober, Elke & Oddershede, L. B., 29 Apr 2022, In: Communications Biology. 5, 1, 11 p., 402.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct Survival, Growth Lag, and rRNA Degradation Kinetics during Long-Term Starvation for Carbon or Phosphate
Himeoka, Y., Gummesson, Bertil, Sørensen, Michael Askvad, Svenningsen, Sine Lo & Mitarai, Namiko, 20 Apr 2022, In: mSphere. 7, 3, 12 p., e01006-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Wrinkle force microscopy: a machine learning based approach to predict cell mechanics from images
Liu, H., Daiki, M., Tsubasa, M., Hiroki, A., Genki, K., Koki, I., Doostmohammadi, Amin & Shinji, D., 14 Apr 2022, In: Communications Biology. 5, 1, 9 p., 361.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protection of bacteriophage-sensitive Escherichia coli by lysogens
Brown, Stanley, Mitarai, Namiko & Sneppen, Kim, 2 Apr 2022, In: Proceedings of the National Academy of Sciences USA (PNAS). 119, 4, e2106005119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Self-organized quantization and oscillations on continuous fixed-energy sandpiles
Niehues, J., Jensen, Gorm Gruner & Härter, Jan Olaf Mirko, 31 Mar 2022, In: Physical Review E. 105, 3, 13 p., 034314.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Filopodia rotate and coil by actively generating twist in their actin shaft
Leijnse, Natascha, Farhangibarooji, Younes, Arastoo, M. R., Sonder, S. L., Verhagen, B., Wullkopf, L., Erler, Janine, Semsey, S., Nylandsted, J., Oddershede, L. B., Doostmohammadi, Amin & Bendix, Poul Martin, 28 Mar 2022, In: Nature Communications. 13, 1, 16 p., 1636.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chemical Pretreatment Activated a Plastic State Amenable to Direct Lineage Reprogramming
Yang, Z., Xioachan, X., Gu, C., Nielsen, Alexander Valentin, Chen, G., Guo, F., Tang, C. & Zhao, Y., 25 Mar 2022, In: Frontiers in Cell and Developmental Biology. 10, 16 p., 865038.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial model of Ebola outbreaks contained by behavior change
Halvorsen, G. S., Simonsen, L. & Sneppen, Kim, 14 Mar 2022, In: Plos One. 17, 3, 11 p., e0264425.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unifying polar and nematic active matter: Emergence and co-existence of half-integer and full-integer topological defects
Amiri, A., Mueller, R. & Doostmohammadi, Amin, 4 Mar 2022, In: Journal of Physics A: Mathematical and Theoretical. 55, 9, 12 p., 094002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Copulas for hydroclimatic analysis: A practice-oriented overview
Tootoonchi, F., Sadegh, M., Härter, Jan Olaf Mirko, Raty, O., Grabs, T. & Teutschbein, C., Mar 2022, In: Wiley Interdisciplinary Reviews: Water. 9, 2, 28 p., 1579.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting limit cycles in stochastic time series
Martiny, E. S., Jensen, Mogens Høgh & Heltberg, Mathias Spliid, 17 Feb 2022, In: Physica A: Statistical Mechanics and its Applications. 605, 10 p., 127917.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A scaling law of multilevel evolution: how the balance between within- and among-collective evolution is determined
Takeuchi, N., Mitarai, Namiko & Kaneko, Kunihiko, 4 Feb 2022, In: Genetics. 220, 2, 9 p., 182.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physics of liquid crystals in cell biology
Doostmohammadi, Amin & Ladoux, B., Feb 2022, In: Trends in Cell Biology. 32, 2, p. 140-150 11 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Use of compliant actuators for throwing rigid projectiles
Giombini, G., Mathiesen, Joachim, D'Angelo, C., Argentina, M., Raufaste, C. & Celestini, F., Feb 2022, In: Physical Review E. 105, 2, 11 p., 025001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biophysical Modeling of Dopaminergic Denervation Landscapes in the Striatum Reveals New Therapeutic Strategy
Heltberg, Mathias Spliid, Awada, H. N., Lucchetti, Alessandra, Jensen, Mogens Høgh, Dreyer, J. K. & Rasmussen, R. N., 2022, In: eNeuro. 9, 2, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chunyun versus lockdown
Lehmann, S., 2022, In: National Science Review. 9, 1, 2 p., nwab178.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational tools for identifying and relating cell-types in development and stem-cell engineering
Nielsen, Alexander Valentin, 2022, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 154 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa
Lichtenberg, Mads, Kragh, K. N., Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Tolker-Nielsen, Tim & Bjarnsholt, Thomas, 2022, In: Cell Reports. 41, 3, p. 111515 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct impacts of polar and nematic self-propulsion on active unjamming
Venkatesh, V., Mondal, C. & Doostmohammadi, Amin, 2022, In: Journal of Chemical Physics. 157, 16, 11 p., 164901.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems
Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, Kim & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Executive attention control impairments and social anxiety symptoms in children
Reinholdt-Dunne, M. L., Blicher, A., Rinck, M. & Klein, A., 2022, In: Journal of Experimental Psychopathology. 13, 2, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse
Svenningsen, Mikkel Skjoldan, Svenningsen, Sine Lo, Sørensen, Michael Askvad & Mitarai, Namiko, 2022, In: Life Science Alliance. 5, 2, 9 p., e202101076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extracting the interdisciplinary specialty structures in social media data-based research: A clustering-based network approach
Fan, Yangliu, Lehmann, S. & Blok, Anders, 2022, In: Journal of Informetrics. 16, 3, 18 p., 101310.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluctuation-induced dynamics of nematic topological defects
Bonn, Lasse Frederik, Ardaeva, Aleksandra, Mueller, R., Shendruk, T. N. & Doostmohammadi, Amin, 2022, In: Physical Review E. 106, 10 p., 044706.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of the central intermediate in the extra-embryonic to embryonic endoderm transition through single-cell transcriptomics
Rothová, M. M., Nielsen, Alexander Valentin, Proks, Martin, Wong, Yan Fung, Riveiro, A. R., Linneberg-Agerholm, Madeleine, David, E., Amit, I., Trusina, Ala & Brickman, Joshua Mark, 2022, In: Nature Cell Biology. 24, 6, p. 833-844 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiciliated cells use filopodia to probe tissue mechanics during epithelial integration in vivo
Ventura, G., Amiri, A., Thiagarajan, Raghavan, Tolonen, Mari, Doostmohammadi, Amin & Sedzinski, Jakub, 2022, In: Nature Communications. 13, 1, 15 p., 6423.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population dynamics and diseases
Eilersen, Andreas Thomas, 2022, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 133 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Pressure Effects on Simultaneous Optical and Acoustics Data from Laser-Induced Plasmas in Air: Implications to the Differentiation of Geological Materials
Alvarez-Llamas, C., Purohit, P., Moros, J. & Laserna, J. J., 2022, In: Applied Spectroscopy. 76, 8, p. 946-958 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin
Nickels, Jan Fabio, Della-Rosa, M. E., Miguelez Goyeneche, I., Charlton, Sebastian Jespersen, Sneppen, Kim & Thon, Genevieve, 2022, In: Cell Reports. 39, 7, 17 p., 110828.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thermoplasmonic nano-rupture of cells reveals Annexin V function in plasma membrane repair
Moreno Pescador, Guillermo Sergio, Aswad, D. S., Florentsen, C. D., Bahadori, Azra, Arastoo, M. R., Danielsen, Helena Maria Dávidsdóttir, Heitmann, A. S. B., Boye, T. L., Nylandsted, J., Oddershede, L. B. & Bendix, Poul Martin, 2022, In: Nanoscale. 14, p. 7778–7787Research output: Contribution to journal › Journal article › Research
- Published
Topological defects in biological matter
Ardaeva, Aleksandra & Doostmohammadi, Amin, 2022, In: Nature Reviews Physics. 4, p. 354-356 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Trajectories of migrating U87-MG cancer cells, gradient vs. gradient free
Jauffred, Liselotte, Søgaard, M. T. & Audoin, M., 2022Research output: Other contribution › Research
- Published
Transcriptomic Fingerprint of Bacterial Infection in Lower Extremity Ulcers
Fritz, Blaine Gabriel, Kirkegaard, Julius Bier, Nielsen, C. H., Kirketerp-Møller, K., Malone, M. & Bjarnsholt, Thomas, 2022, In: A P M I S. Acta Pathologica, Microbiologica et Immunologica Scandinavica. 130, 8, p. 524-534Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Cold pools over the Netherlands: A statistical study from tower and radar observations
Kruse, Irene Livia, Härter, Jan Olaf Mirko & Meyer, B., 27 Dec 2021, In: Quarterly Journal of the Royal Meteorological Society. 148, 743, p. 711-726 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Superspreading quantified from bursty epidemic trajectories
Kirkegaard, Julius Bier & Sneppen, Kim, 16 Dec 2021, In: Scientific Reports. 11, 1, 7 p., 24124.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity-induced instabilities of brain organoids
Thijssen, K., Kusters, G. L. A. & Doostmohammadi, Amin, 7 Dec 2021, In: The European Physical Journal E: Soft Matter and Biological Physics. 44, 12, 8 p., 147.Research output: Contribution to journal › Journal article › Research › peer-review
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes
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