Biocomplexity

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  1. 2019
  2. Published

    Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

    Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Bernaise: A Flexible Framework for Simulating Two-Phase Electrohydrodynamic Flows in Complex Domains

    Linga, G., Bolet, A. & Mathiesen, Joachim, 4 Mar 2019, In: Frontiers in Physics. 7, 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Gender bias in Nobel prizes

    Lunnemann, P., Jensen, Mogens Høgh & Jauffred, Liselotte, 7 May 2019, In: Humanities and social sciences communications. 5, 4 p., 46.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

    Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Membrane protein dynamics studied with optical and thermoplasmonic methods in complex and simple membranes

    Moreno Pescador, Guillermo Sergio, 2019, Niels Bohr Institute, Faculty of Science, University of Copenhagen. 163 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Quantification of protein dynamics in nanotubes pulled from transfected cell-derived vesicles

    Moreno Pescador, Guillermo Sergio, Florentsen, C., Østbye, H., Sønder, S. L., Boye, T. L., Veje, E. L., Semsey, S., Nylandsted, J., Daniels, R. & Bendix, Poul Martin, 20 Jul 2019, In: European Biophysics Journal. 48, Suppl. 1, p. S159-S159

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  8. Published

    Curvature- and Phase-Induced Protein Sorting Quantified in Transfected Cell-Derived Giant Vesicles

    Moreno Pescador, Guillermo Sergio, Florentsen, C. D., Østbye, H., Sønder, S. L., Boye, T. L., Veje, E. L., Sonne, A. K., Semsey, S., Nylandsted, J., Daniels, R. & Bendix, Poul Martin, Jun 2019, In: ACS Nano. 13, 6, p. 6689-6701

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Effect of local thermoplasmonic heating on biological membranes

    Moreno Pescador, Guillermo Sergio, Qoqaj, I., Thusgaard Ruhoff, Victoria, Iversen, J., Nylandsted, J. & Bendix, Poul Martin, 9 Sep 2019, In: Proceedings of S P I E - International Society for Optical Engineering. 11083, 19 p., 110830M.

    Research output: Contribution to journal › Conference article › Research › peer-review

  10. Published

    A Statistical Model for Isolated Convective Precipitation Events

    Moseley, C., Henneberg, O. & Härter, Jan Olaf Mirko, 29 Jan 2019, In: Journal of Advances in Modeling Earth Systems. 11, 1, p. 360-375

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Melting transitions in biomembranes

    Muzic, T., Tounsi, F., Madsen, S. B., Pollakowski, D., Konrad, M. & Heimburg, Thomas Rainer, 26 Sep 2019, In: B B A - Biomembranes. 1861, 11, 11 p., 183026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    MR-based CT metal artifact reduction for head-and-neck photon, electron, and proton radiotherapy

    Nielsen, J. S., Van Leemput, K. & Edmund, J. M., Oct 2019, In: Medical Physics. 46, 10, p. 4314-4323

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

    Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Backscattering-based detection scheme for dark-field optical tweezers

    Samadi, A., Mousavi, S. M., Hajizadeh, F. & Reihani, S. N. S., 1 Jun 2019, In: Journal of the Optical Society of America B: Optical Physics. 36, 6, p. 1587-1593

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Optical control of strongly absorbing nanoparticles and their potential for photothermal treatment

    Samadi, A., Jauffred, Liselotte, Klingberg, H., Bendix, Poul Martin & Oddershede, L. B., 1 Mar 2019, In: Proceedings of SPIE. 10935, 109351A.

    Research output: Contribution to journal › Conference article › Research › peer-review

  16. Published

    The fitness cost and benefit of phase-separated protein deposits

    Sanchez de Groot, N., Torrent Burgas, M., Ravarani, C. N. J., Trusina, Ala, Ventura, S. & Babu, M. M., Apr 2019, In: Molecular Systems Biology. 15, 4, e8075.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fractionated photothermal therapy in a murine tumor model: comparison with single dose

    Simón, M., Nørregaard, K., Jørgensen, Jesper Tranekjær, Oddershede, L. B. & Kjær, Andreas, Jul 2019, In: International Journal of Nanomedicine. 14, p. 5369—5379

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent

    Sneppen, Kim & Ringrose, L., 13 May 2019, In: Nature Communications. 10, 18 p., 2133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations

    Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Exploring the contribution of exposure heterogeneity to the cessation of the 2014 Ebola epidemic

    Uekermann, F., Simonsen, L. & Sneppen, Kim, 1 Feb 2019, In: PLoS ONE. 14, 2, 11 p., e0210638.

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    Influence of volumetric modulated arc therapy and FET-PET scanning on treatment outcomes for glioblastoma patients

    af Rosenschold, P. M., Law, Ian, Engelholm, S. A., Muhic, A., Lundemann, M. J., Roed, H., Grunnet, K. & Poulsen, H. S., Jan 2019, In: Radiotherapy and Oncology. 130, p. 149-155

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. 2018
  24. Published

    Social network differences of chronotypes identified from mobile phone data

    Aledavood, T., Lehmann, S. & Saramaki, J., 1 Dec 2018, In: EPJ Data Science. 7, 13 p., 46.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Evidence for a conserved quantity in human mobility

    Alessandretti, L., Sapiezynski, P., Sekara, V., Lehmann, S. & Baronchelli, A., 1 Jul 2018, In: Nature Human Behaviour. 2, 7, p. 485-491

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Understanding the interplay between social and spatial behaviour

    Alessandretti, L., Lehmann, S. & Baronchelli, A., 18 Sep 2018, In: EPJ Data Science. 7, 17 p., 36.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Constrained information flows in temporal networks reveal intermittent communities

    Aslak, U., Rosvall, M. & Jørgensen, Sune Lehmann, 22 Jun 2018, In: Physical Review E. 97, 6, 11 p., 062312.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Remotely controlled fusion of selected vesicles and living cells: a key issue review

    Bahadori, Azra, Moreno Pescador, Guillermo Sergio, Oddershede, L. B. & Bendix, Poul Martin, 25 Jan 2018, In: Reports on Progress in Physics. 81, 3, 26 p., 032602.

    Research output: Contribution to journal › Review › Research › peer-review

  29. Published

    Electrohydrodynamic channeling effects in narrow fractures and pores

    Bolet, A., Linga, G. & Mathiesen, Joachim, 6 Mar 2018, In: Physical Review E. 97, 4, 043114.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Electrohydrodynamics in one and two phases

    Bolet, A. J. S., 2018, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    Friction-limited cell motility in confluent monolayer tissue

    Christensen, A., West, A. V., Wullkopf, L., Erler, Janine, Oddershede, L. B. & Mathiesen, Joachim, 25 Jul 2018, In: Physical Biology. 15, 6, 11 p., 066004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    18F FDG PET/ CT for planning external beam radiotherapy alters therapy in 11% of 581 patients

    Christensen, C. B., Jakobsen, A. I. L., Munck af Rosenschold, P., Højgaard, Liselotte, Roed, H. & Berthelsen, A. K., 1 Mar 2018, In: Clinical Physiology and Functional Imaging. 38, 2, p. 278-284

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Understanding predictability and exploration in human mobility

    Cuttone, A., Lehmann, S. & Gonzalez, M. C., 11 Jan 2018, In: EPJ Data Science. 7, 17 p., 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Modelling the influence of metabolite diffusion on non-starter lactic acid bacteria growth in ripening Cheddar cheese

    Czárán, T., Rattray, F. P., Møller, C. O. D. A. & Christensen, B. B., 2018, In: International Dairy Journal. 80, p. 35-45 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Deconstructing the principles of ductal network formation in the pancreas

    Dahl-Jensen, Svend Bertel, Yennek, S., Flasse, L., Larsen, Hjalte List, Sever, D., Karremore, G., Novak, Ivana, Sneppen, Kim & Botton, A., 2018, In: PLOS Biology. 16, 7, 25 p., e2002842.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Feasibility of a novel liquid fiducial marker for use in image guided radiotherapy of oesophageal cancer

    De Blanck, S. R., Scherman-Rydhog, J., Siemsen, Mette, Christensen, M., Baeksgaard, L., Jolck, R. I., Specht, Lena, Andresen, T. L. & Persson, Gitte F., 9 Jul 2018, In: British Journal of Radiology. 91, 1092, 5 p., 20180236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Bowhead: Bayesian modelling of cell velocity during concerted cell migration

    Engel, M., Longden, J., Ferkinghoff-Borg, J., Robin, X., Saginc, G. & Linding, R., 2018, In: P L o S One. 14, 1, p. 1-10 10 p., e1005900.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A growing microcolony can survive and support persistent propagation of virulent phages

    Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Dendritic core crystallization in minor planets - an empirically constrained numerical simulation study

    Esbensen, K., Haack, H., Erleben, Kenny & Misztal, M. K., 2018, p. 76. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  40. Published

    Quantification of Loading and Laser-Assisted Release of RNA from Single Gold Nanoparticles

    Florentsen, C. D., West, A. V., Danielsen, Helena Maria Dávidsdóttir, Semsey, S., Bendix, Poul Martin & Oddershede, L. B., 11 Dec 2018, In: Langmuir. 34, 49: SI, p. 14891-14898 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

    The Respiratory Viral DREAM Challenge Consortium, T. R. V. D. C. C. & Sieberts, S. K., 1 Dec 2018, In: Nature Communications. 9, 1, p. 1-11 4418.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Functional Channel Membranes for Drinking Water Production

    Gonzalez-Perez, Alfredo, Persson, K. M. & Lipnizki, F., 28 Jun 2018, In: Water. 10, 7, 11 p., 859.

    Research output: Contribution to journal › Review › Research › peer-review

  43. Published

    Structural stability of SoPIP2;1 aquaporin under reconstitution in polymersomes

    Gonzalez-Perez, Alfredo, Persson, K. M. & Taboada, P., 1 May 2018, In: Journal of Molecular Liquids. 257, p. 26-31

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Intensified Cold Pool Dynamics Under Stronger Surface Heating

    Härter, Jan Olaf Mirko & Schlemmer, L., 28 Jun 2018, In: Geophysical Research Letters. 45, 12, p. 6299-6310

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Theory of invasion extinction dynamics in minimal food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology

    Harms, A., Brodersen, D. E., Mitarai, Namiko & Gerdes, K., 7 Jun 2018, In: Molecular Cell. 70, 5, p. 768-784 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  47. Published

    Comment on Tamagawa and Ikeda's reinterpretation of the Goldman-Hodgkin-Katz equation: Are transmembrane potentials caused by polarization?

    Heimburg, Thomas Rainer, 5 Oct 2018, In: European Biophysics Journal. 47, 8, p. 865-867 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Assessing the uncertainty of soil moisture impacts on convective precipitation using a new ensemble approach

    Henneberg, O., Ament, F. & Gruetzun, V., 7 May 2018, In: Atmospheric Chemistry and Physics. 18, 9, p. 6413-6425

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Gold Nanostars Coated with Mesoporous Silica Are Effective and Nontoxic Photothermal Agents Capable of Gate Keeping and Laser Induced Drug Release

    Hernandez Montoto, A., Montes, R., Samadi, A., Gorbe, M., Manuel Terres, J., Cao-Milan, R., Aznar, E., Ibanez, J., Masot, R., Dolores Marcos, M., Orzaez, M., Sancenon, F., Oddershede, L. B. & Martinez-Manez, R., 22 Aug 2018, In: A C S Applied Materials and Interfaces. 10, 33, p. 27644-27656

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Stochastic activation in a genetic switch model

    Hertz, John, Tyrcha, J. & Correales, A., 6 Nov 2018, In: Physical Review E. 98, 5, 17 p., 052403.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Why not use thermal radiation for nanothermometry?

    Jauffred, Liselotte, 1 Nov 2018, In: Applied Optics. 57, 31, p. 9508-9511

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Entrainment as a means of controlling phase waves in populations of coupled oscillators

    Juul, J. S., Krishna, S. & Jensen, Mogens Høgh, 21 Dec 2018, In: Physical Review E. 98, 6, 9 p., 062412.

    Research output: Contribution to journal › Journal article › Research › peer-review

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