Biocomplexity

Read more
501 - 1000 out of 1,162Page size: 500
  1. 2015
  2. Published

    Voices of chemical biology

    Bertozzi, C. R., Stockwell, B. R., Kubicek, S., Dickinson, B. C., Chang, C. J., Schultz, C., Silver, P. A., Gestwicki, J. E., Chiosis, G., Chattopadhyay, A., Butcher, R. A., Park, S. B., Shoichet, B. K., Flitsch, S. L., Zhang, J., Liu, D. R., Ohnishi, Y., Weerapana, E., Williams, A. H., He, C. & 11 others, Moroni, A., Thiel, G., Chang, Y., Waldmann, H., Bogyo, M., Oddershede, L. B., Christopoulos, A., Imperiali, B., Ehrlich, H., Chen, X. & Prescher, J. A., 1 Jun 2015, In: Nature Chemical Biology. 11, 6, p. 378-379

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    An easy-to-prepare mini-scaffold for DNA origami

    Brown, Stanley, Majikes, J., Martinez, A., Giron, T. M., Fennell, H., Samano, E. C. & LaBean, T. H., 22 Jul 2015, In: Nanoscale. 7, 40, p. 16621-16624

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Deformation of phospholipid vesicles in an optical stretcher

    Delabre, U., Feld, K., Crespo, E., Whyte, G., Sykes, C., Seifert, U. & Guck, J., 1 Feb 2015, In: Soft Matter. 11, 30, p. 6075-6088

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Temporal and spatial scaling impacts on extreme precipitation

    Eggert, B., Berg, P., Härter, Jan Olaf Mirko, Jacob, D. & Moseley, C., 29 May 2015, In: Atmospheric Chemistry and Physics. 15, 10, p. 5957-5971

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Vocal Fold Collision Modeling

    Granados, A., Brunskog, J. & Misztal, M. K., 31 Aug 2015, Proceedings of the 9th International Workshop on Models and Analysis of Vocal Emissions for Biomedical Application: The 11th Pan-European Voice Conference (PEVOC 2015) and the 9th International Workshop on Models and Analysis of Vocal Emissions for Biomedical Application (MAVEBA 2015), 31-8-2015-04-09-2015. Florence, Italy, Vol. 4.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  7. Published

    Protein reconstitution into freestanding planar lipid membranes for electrophysiological characterization

    Gutsmann, T., Heimburg, Thomas Rainer, Keyser, U., Mahendran, K. R. & Winterhalter, M., 10 Jan 2015, In: Nature Protocols (Print). 10, 1, p. 188-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades

    Hansen, S., Krishna, S., Semsey, S. & Svenningsen, Sine Lo, 17 Jul 2015, In: Scientific Reports. 5, 12186.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Why do bacteria regulate public goods by quorum sensing?-How the shapes of cost and benefit functions determine the form of optimal regulation

    Heilmann, Silja, Krishna, S. & Kerr, B., 2015, In: Frontiers in Microbiology. 6, p. 767

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Spatial patterns of competing random walkers

    Hernandez-Garcia, E., Heinsalu, E. & Lopez, C., 1 Mar 2015, In: Ecological Complexity: An International Journal on Biocomplexity in the Environment and Theoretical Ecology. 21, SI, p. 166-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Statistical precipitation bias correction of gridded model data using point measurements

    Härter, Jan Olaf Mirko, Eggert, B., Moseley, C., Piani, C. & Berg, P., 28 Mar 2015, In: Geophysical Research Letters (Online). 42, 6, p. 1919-1929

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Cumulants of Hawkes point processes

    Jovanovic, S., Hertz, John & Rotter, S., 7 Apr 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 91, 4, 9 p., 042802.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Digital signaling decouples activation probability and population heterogeneity

    Kellogg, R. A., Tian, C., Lipniacki, T., Quake, S. R. & Tay, S., 2015, In: eLife. 4, e08931.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The influence of flow, shear stress and adhesion molecule targeting on gold nanoparticle uptake in human endothelial cells

    Klingberg, H., Loft, Steffen, Oddershede, L. B. & Møller, Peter, 1 Feb 2015, In: Nanoscale. 7, 26, p. 11409-11419

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Uptake of gold nanoparticles in primary human endothelial cells

    Klingberg, H., Oddershede, L. B., Loeschner, K., Larsen, E. H., Loft, Steffen & Møller, Peter, 1 Feb 2015, In: Toxicology Research. 4, 3, p. 655-666

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    PET/CT-guided treatment planning for paediatric cancer patients: a simulation study of proton and conventional photon therapy

    Kornerup, J. S., Brodin, N. P., Bjork-Eriksson, T., Christensen, C. B., Kiil-Berthelsen, A., Aznar, M. C., Hollensen, C., Markova, E. & Af Rosenschold, P. M., 1 Mar 2015, In: British Journal of Radiology. 88, 1047, 20140586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Use of PET/CT instead of CT-only when planning for radiation therapy does not notably increase life years lost in children being treated for cancer

    Kornerup, J. S., Brodin, N. P., Christensen, C. B., Bjork-Eriksson, T., Kiil-Berthelsen, A., Borgwardt, L. & af Rosenschold, P. M., Apr 2015, In: Pediatric Radiology. 45, 4, p. 570-581

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A monomer-trimer model supports intermittent glucagon fibril growth

    Kosmrlj, A., Cordsen, P., Kyrsting, A., Otzen, D., Oddershede, L. B. & Jensen, Mogens Høgh, 11 Mar 2015, In: Scientific Reports. 5, 9005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A 3 ' External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise

    Lalaouna, D., Carrier, M., Semsey, S., Brouard, J., Wang, J., Wade, J. T. & Masse, E., 7 May 2015, In: Molecular Cell. 58, 3, p. 393-405

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    An updated look at actin dynamics in filopodia

    Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 1 Feb 2015, In: Cytoskeleton. 72, 2, p. 71-79

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    Dynamic buckling of actin within filopodia

    Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 21 Oct 2015, In: Communicative & Integrative Biology. 8, 2, p. e1022010

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Helical Buckling in Filopodia

    Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 27 Jan 2015, In: Biophysical Journal. 108, 2,Suppl 1, p. 139a-139a

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Helical buckling of actin inside filopodia generates traction

    Leijnse, Natascha, Oddershede, L. B. & Bendix, Poul Martin, 2015, In: Proceedings of the National Academy of Sciences USA (PNAS). 112, 1, p. 136-141

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Diversity Waves in Collapse-Driven Population Dynamics

    Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Well-temperate phage: optimal bet-hedging against local environmental collapses

    Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Unstructured Lattice Boltzmann methods for efficient simulation of flow in complex porous media: EGU General Assembly 2015

    Mathiesen, Joachim, Misztal, M. K., Matin, R. & Hernandez, A., 1 Jan 2015, In: Geophysical Research Abstracts. 17, 5669.

    Research output: Contribution to journal › Conference article › Research › peer-review

  27. Published

    Simulating Anomalous Dispersion and Multiphase Segregation in Porous Media with the Lattice Boltzmann Method

    Matin, R., Misztal, M. K., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.

    Research output: Contribution to conference › Conference abstract for conference › Research

  28. Published

    The length distribution of frangible biofilaments

    Michaels, T. C. T., Yde, Pernille, Willis, J. C. W., Jensen, Mogens Høgh, Otzen, D., Dobson, C. M., Buell, A. K. & Knowles, T. P. J., 28 Oct 2015, In: Journal of Chemical Physics. 143, 16

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Detailed analysis of the lattice Boltzmann method on unstructured grids

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Journal of Computational Physics. 297, p. 316-339

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Evaluation of the Unstructured Lattice Boltzmann Method in Porous Flow Simulations

    Misztal, M. K., Matin, R., Hernandez Garcia, A. & Mathiesen, Joachim, Nov 2015.

    Research output: Contribution to conference › Conference abstract for conference › Research

  31. Published

    Permeability and Fluid Flow: Presentation at the Phoenix Consortium’s Symposium on Imaging Porous Media and Fluid Flow,

    Misztal, M. K. & Mathiesen, Joachim, 10 Jan 2015, Copenhagen, Denmark

    Research output: Other contribution › Research

  32. Published

    Simulating anomalous dispersion in porous media using the unstructured lattice Boltzmann method

    Misztal, M. K., Hernandez Garcia, A., Matin, R., Müter, D., Jha, D., Sørensen, H. O. & Mathiesen, Joachim, 2015, In: Frontiers in Physics. 3, 9 p., 50.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Two-phase Flow Simulations Using the Lattice Boltzmann Method on Unstructured Grids.

    Misztal, M. K., Matin, R., Hernandez, A. & Mathiesen, Joachim, 1 Jul 2015, 224th International Conference on Discrete Simulation of Fluid Dynamics, 13th-17th July. The Royal Society of Edinburgh ed. Edinburgh

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  34. Published

    Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies

    Mitarai, Namiko, Jensen, Mogens Høgh & Semsey, S., 7 Apr 2015, In: mBio (Print). 6, 2, e00059-15 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity

    Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Full simulation of chiral random matrix theory at nonzero chemical potential by complex Langevin

    Mollgaard, A. & Splittorff, Kim, 26 Feb 2015, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). 91, 3, 036007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Disparate metabolic response to fructose feeding between different mouse strains

    Montgomery, M. K., Fiveash, C. E., Braude, J. P., Osborne, Brenna, Brown, Stanley, Mitchell, T. W. & Turner, N., 22 Dec 2015, In: Scientific Reports. 5, 18474.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    The Effect of the Nonlinearity of the Response of Lipid Membranes to Voltage Perturbations on the Interpretation of Their Electrical Properties. A New Theoretical Description

    Mosgaard, L. D., Zecchi, K. A., Heimburg, Thomas Rainer & Budvytyte, R., Dec 2015, In: Membranes. 5, 4, p. 495-512

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Mechano-capacitive properties of polarized membranes

    Mosgaard, L. D., Zecchi, K. A. & Heimburg, Thomas Rainer, 21 Aug 2015, In: Soft Matter. 11, 40, p. 7899-7910

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Emergent user behavior on Twitter modelled by a stochastic differential equation

    Møllgaard, A. E. & Mathiesen, Joachim, 2015, In: P L o S One. 10, 5, e0123876.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Schelling model of cell segregation based only on local information

    Nielsen, Alexander Valentin, Gade, A. L., Juul, J. & Strandkvist, C., 4 Nov 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 5, 052705.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Comparison of the Photothermal Efficiency of Different Types of Plasmonic Nanoparticles in vitro and in vivo

    Nørregaard, K., Jørgensen, Jesper Tranekjær, Bendix, Poul Martin, Kjær, Andreas & Oddershede, L. B., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 171a

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Physics Based Investigations of DNA Supercoiling and of Plasmonic Nanoparticles for Photothermal Cancer Therapy

    Nørregaard, K., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 151 p.

    Research output: Book/Report › Ph.D. thesis › Research

  44. Published

    Photodiode Based Detection for Multiple Trap Optical Tweezers

    Ott, D., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Optical Trapping of Gold Nanoparticles in Air

    Jauffred, Liselotte, Taheri, S. M., Schmitt, R., Linke, H. & Oddershede, L. B., 1 Jul 2015, In: Nano Letters. 15, 7, p. 4713-4719

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Vesicle Fusion Triggered by Optically Heated Gold Nanoparticles

    Rorvig-Lund, A., Bahadori, Azra, Semsey, S., Bendix, Poul Martin & Oddershede, L. B., 1 Jun 2015, In: Nano Letters. 15, 6, p. 4183-4188

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Quantification and comparison of visibility and image artifacts of a new liquid fiducial marker in a lung phantom for image-guided radiation therapy

    Rydhog, J. S., Jolck, R. I., Andresen, T. L. & Munck af Rosenschöld, P. M., Jun 2015, In: Medical Physics. 42, 6, p. 2818-2826

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Tracking Human Mobility Using WiFi Signals

    Sapiezynski, P., Stopczynski, A., Gatej, R. & Jørgensen, Sune Lehmann, 1 Jul 2015, In: PloS one. 10, 7, 013024.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Optical trapping of gold aerosols

    Schmitt, R. K., Jauffred, Liselotte, Taheri, S. M., Linke, H. & Oddershede, L. B., 25 Aug 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE - International Society for Optical Engineering, Vol. 9548. 95480F-1

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  50. Published

    Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae

    Sneppen, Kim & Dodd, I. B., 1 Apr 2015, In: Epigenetics. 10, 4, p. 293-302

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Restriction modification systems as engines of diversity

    Sneppen, Kim, Semsey, S., Seshasayee, A. S. N. & Krishna, S., 2 Jun 2015, In: Frontiers in Microbiology. 6, 528.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Membrane Curvature Regulates the Localization of G Protein Coupled Receptors and Ras Isoforms

    Stamou, Dimitrios, Rosholm, K. R., Damalas, A., Hatzakis, Nikos, Wirth, V. F., Martinez, Karen Laurence, Leijnse, Natascha, Oddershede, L. B., Bendix, Poul Martin & Pedersen, S. L., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 95a-96a

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Temporal fidelity in dynamic social networks

    Stopczynski, A., Sapiezynski, P., Pentland, A. '. & Jørgensen, Sune Lehmann, 7 Oct 2015, In: European Physical Journal B. Condensed Matter and Complex Systems. 88, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Enforced Scale Selection in Field Theories of Mechanical and Biological Systems

    Tarp, J. M., 2015, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 50 p.

    Research output: Book/Report › Ph.D. thesis › Research

  55. Published

    Rotation-limited growth of three-dimensional body-centered-cubic crystals

    Tarp, J. M. & Mathiesen, Joachim, 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 1, 012409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  58. Published

    Unraveling the Mesoscopic Character of Quantum Dots in Nanophotonics

    Tighineanu, P., Sørensen, Anders Søndberg, Stobbe, S. & Lodahl, Peter, 19 Jun 2015, In: Physical Review Letters. 114, 24, 247401.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Observation of Motion-Dependent Nonlinear Dispersion with Narrow-Linewidth Atoms in an Optical Cavity

    Westergaard, P. G., Christensen, B. T. R., Tieri, D., Matin, R., Cooper, J., Holland, M., Ye, J. & Thomsen, Jan Westenkær, 4 Mar 2015, In: Physical Review Letters. 114, 9, 093002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Interferometric detection of single gold nanoparticles calibrated against TEM size distributions

    Zhang, L., Christensen, S., Bendix, Poul Martin, Bhatia, V. K., Loft, Steffen & Stamou, Dimitrios, 2015, In: Small. 11, 29, p. 3550-3555 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. 2014
  62. Published

    Comment on Y. Couder and E. Fort: Single-Particle Diffraction and Interference at a Macroscopic Scale; Phys. Rev. Lett. 97, 154101 (2006)

    Andersen, A., Madsen, J., Reichelt, C., Ahl, S. R., Lautrup, B. E., Ellegaard, Clive Sigurd, Levinsen, Mogens & Bohr, T., 4 Apr 2014, In: arXiv.org: Physics. 1405.0466v1

    Research output: Contribution to journal › Journal article › Research

  63. Published

    Local and transient permeation events are associated with local melting of giant liposomes

    Andersen, T., Kyrsting, A. H. & Bendix, Poul Martin, 2 Nov 2014, In: Soft Matter. 10, 24, p. 4268-4274

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Nanoscale Phase Behavior on Flat and Curved Membranes

    Andersen, T., Bahadori, Azra, Ott, D., Kyrsting, A. H., Seyyed Reihani, S. N. & Bendix, Poul Martin, 28 Nov 2014, In: Nanotechnology. 25, 50, 505101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Irregular breathing during 4DCT scanning of lung cancer patients: Is the midventilation approach robust?

    Aznar, M. C., Persson, Gitte F., Kofoed, I. M., Nygaard, D. E. & Korreman, S. S., 1 Feb 2014, In: Physica Medica. 30, 1, p. 69-75

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Optical Trapping of Nanoparticles and Quantum Dots

    Bendix, Poul Martin, Jauffred, Liselotte, Nørregaard, K. & Oddershede, L. B., 1 Jun 2014, In: IEEE Journal of Selected Topics in Quantum Electronics. 20, 3, 4800112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli

    Bendtsen, K. M., Jensen, M. B., May, A., Rasmussen, Lene Juel, Trusina, Ala, Bohr, Vilhelm & Jensen, Mogens Høgh, 14 Nov 2014, In: European Biophysics Journal. 43, 10-11, p. 509-516

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Disjoint domains interactions framework for hyperelastic simulations

    Bonde, U., Misztal, M. K., Visseq, V. & Erleben, Kenny, 2014. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  69. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts

    Boomsma, Wouter, Tian, P., Frellsen, J., Ferkinghoff-Borg, J., Hamelryck, Thomas Wim, Lindorff-Larsen, Kresten & Vendruscolo, M., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 38, p. 13852-13857 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Disturbance accelerates the transition from low- to high-diversity state in a model ecosystem

    Botta, F. & Mitarai, Namiko, 4 Feb 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 89, 2, 022704.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Hippocampal sparing radiotherapy for pediatric medulloblastoma: impact of treatment margins and treatment technique

    Brodin, N. P., af Rosenschold, P. M., Blomstrand, M., Kiil-Berthlesen, A., Hollensen, C., Vogelius, Ivan R. , Lannering, B., Bentzen, S. M. & Bjork-Eriksson, T., Apr 2014, In: Neuro-Oncology. 16, 4, p. 594-602

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Optimizing the radiation therapy dose prescription for pediatric medulloblastoma: Minimizing the life years lost attributable to failure to control the disease and late complication risk

    Brodin, N. P., Vogelius, Ivan R. , Bjork-Eriksson, T., af Rosenschold, P. M., Maraldo, M. V., Aznar, M. C., Specht, Lena & Bentzen, S. M., 1 Apr 2014, In: Acta Oncologica. 53, 4, p. 462-470

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Action Potential Collision in Nerves

    Budvytyte, R., Gonzalez-Perez, Alfredo, Mosgaard, L. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 794A-794A

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Dynamics of Fibril Growth and Feedback Motifs

    Cordsen, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  75. Published

    Recurrences after intensity modulated radiotherapy for head and neck squamous cell carcinoma more likely to originate from regions with high baseline [18F]-FDG uptake

    Due, A. K., Vogelius, Ivan R. , Aznar, M. C., Bentzen, S. M., Berthelsen, A. K., Korreman, S. S., Loft, A., Kristensen, C. A. & Specht, Lena, 1 Jun 2014, In: Radiotherapy & Oncology. 111, 3, p. 360-365

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Modeling rises and falls in money addicted social hierarchies

    Dybiec, B., Mitarai, Namiko & Sneppen, Kim, 2014, In: Physica Scripta. 89, 8, 085002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Force spectroscopy of DNA and RNA: structure and kinetics from single-molecule experiments

    Ettlinger, R. B., Sørensen, Michael Askvad & Oddershede, L. B., 2014, Nucleic Acid Nanotechnology. Springer, Vol. 29. p. 23-52 31 p. (Nucleic Acids and Molecular Biology, Vol. 29).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  78. Published

    Motion management during IMAT treatment of mobile lung tumors-A comparison of MLC tracking and gated delivery

    Falk, M., Pommer, T., Keall, P., Korreman, S., Persson, Gitte F., Poulsen, P. & Munck af Rosenschöld, P. M., 1 Oct 2014, In: Medical Physics. 41, 10, 101707.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Fluorescent quantification of size and lamellarity of membrane nanotubes

    Farhangibarooji, Younes, Oddershede, L. B., Seyyed Reihani, S. N. & Bendix, Poul Martin, 2 Dec 2014, In: European Biophysics Journal. 43, 12, p. 595-602

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    A treatment planning and delivery comparison of volumetric modulated arc therapy with or without flattening filter for gliomas, brain metastases, prostate, head/neck and early stage lung cancer

    Gasic, D., Ohlhues, L., Brodin, N. P., Fog, L. S., Pommer, T., Bangsgaard, J. P. & Munck af Rosenschöld, P. M., 1 Aug 2014, In: Acta Oncologica. 53, 8, p. 1005-1011

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Penetration of Action Potentials During Collision in the Median and Lateral Giant Axons of Invertebrates

    Gonzalez-Perez, Alfredo, Budvytyte, R., Mosgaard, L. D., Nissen, S. & Heimburg, Thomas Rainer, 10 Sep 2014, In: Physical Review X. 4, 3, 031047.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Reversible DNA Compaction

    Gonzalez-Perez, Alfredo, 1 Mar 2014, In: Current Topics in Medicinal Chemistry. 14, 6, p. 766-773

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    The Thermodynamics of General and Local Anesthesia

    Graesboll, K., Sasse-Middelhoff, H. & Heimburg, Thomas Rainer, 20 May 2014, In: Biophysical Journal. 106, 10, p. 2143-2156

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Finite element modeling of the vocal folds with deformable interface tracking

    Granados, A., Brunskog, J., Misztal, M. K., Visseq, V. & Erleben, Kenny, 2014, Forum Acusticum. European Acoustics Association, 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  85. Published

    THE ROLE OF BILINGUALS IN LANGUAGE COMPETITION

    Heinsalu, E., Patriarca, M. & Leonard, J. L., 1 Feb 2014, In: Advances in Complex Systems. 17, 1, 1450003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Kinetic models of immediate exchange

    Heinsalu, E. & Patriarca, M., 1 Jan 2014, In: European Physical Journal B. Condensed Matter and Complex Systems. 87, 8, 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Non-Steady Wall-Bounded Flows of Viscoelastic Fluids Under Periodic Forcing

    Hernandez-Garcia, A., Fernandez Barbero, A. & Sotolongo-Costa, O., 1 Aug 2014, In: Brazilian Journal of Physics. 44, 4, p. 315-325

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states

    Härter, Jan Olaf Mirko, Lövkvist, Cecilia, Dodd, I. B. & Sneppen, Kim, 1 Feb 2014, In: Nucleic Acids Research. 42, 4, p. 2235-2244

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Phage and bacteria support mutual diversity in a narrowing staircase of coexistence

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    A supra-cellular model for coupling of bone resorption to formation during remodeling: lessons from two bone resorption inhibitors affecting bone formation differently

    Jensen, P. R., Andersen, T. L., Pennypacker, B. L., Duong, L. T., Engelholm, Lars Henning & Delaissé, J., 10 Jan 2014, In: Biochemical and Biophysical Research Communications. 443, 2, p. 694-9 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Injectable Colloidal Gold in a Sucrose Acetate Isobutyrate Gelating Matrix with Potential Use in Radiation Therapy

    Jolck, R. I., Binderup, Tina, Hansen, A. E., Scherman, J. B., Munck af Rosenschöld, P. M., Kjær, Andreas & Andresen, T. L., 1 Oct 2014, In: Advanced Healthcare Materials. 3, 10, p. 1680-1687

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Deep inspiration breath hold radiotherapy of lung cancer: The good, the bad and the ugly case

    Josipovic, Mirjana, Aznar, M. C. & Persson, Gitte F., 1 Oct 2014, In: Acta Oncologica. 53, 10, p. 1446-+

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Spatial Models and Networks of Living Systems

    Juul, J. S., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  94. Published

    Dynamic operation of optical fibres beyond the single-mode regime facilitates the orientation of biological cells

    Kreysing, M., Ott, D., Schmidberger, M. J., Otto, O., Schuermann, M., Martin-Badosa, E., Whyte, G. & Guck, J., 1 Nov 2014, In: Nature Communications. 5, 5481.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Saturation of Shape Instabilities in Single Bubble Sonoluminescence Saturation

    Levinsen, Mogens, 29 Jul 2014, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 90, 1, 013026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Heat Generation by Irradiated Complex Composite Nanostructures

    Ma, H., Tian, P., Pello, J., Bendix, Poul Martin & Oddershede, L. B., 6 Jan 2014, In: Nano Letters. 14, 2, p. 612-619

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Thermo-plasmonics of Irradiated Metallic Nanostructures

    Ma, H., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 123 p.

    Research output: Book/Report › Ph.D. thesis › Research

  98. Published

    The impact of involved node, involved field and mantle field radiotherapy on estimated radiation doses and risk of late effects for pediatric patients with Hodgkin lymphoma

    Maraldo, M. V., Jorgensen, M., Brodin, N. P., Aznar, M. C., Vogelius, Ivan R. , Petersen, P. M., Berthelsen, A. K., Christensen, C. B., Hjalgrim, L. L. & Specht, Lena, 1 Apr 2014, In: Pediatric Blood & Cancer. 61, 4, p. 717-722 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Toward Larger DNA Origami

    Marchi, A. N., Saaem, I., Vogen, B. N., Brown, Stanley & LaBean, T. H., 2014, In: Nano Letters. 14, 10, p. 5740-5747 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Statistics of co-occurring keywords in confined text messages on Twitter

    Mathiesen, Joachim, Angheluta, L. & Jensen, Mogens Høgh, 1 Sep 2014, In: European Physical Journal. Special Topics. 223, 9, p. 1849-1858 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Multiphase flow of immiscible fluids on unstructured moving meshes

    Misztal, M. K., Erleben, Kenny, Bargteil, A., Fursund, J., Christensen, B. B., Bærentzen, J. A. & Bridson, R., 2014, In: I E E E Transactions on Visualization and Computer Graphics. 20, 1, p. 4-16 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Speciation, diversification, and coexistence of sessile species that compete for space

    Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    The Electrical and Dynamical Properties of Biomembranes

    Mosgaard, L. D., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 190 p.

    Research output: Book/Report › Ph.D. thesis › Research

  104. Published

    Modeling positioning uncertainties of prostate cancer external beam radiation therapy using pre-treatment data

    Munck af Rosenschöld, P. M., Desai, N. B., Hun, J., Apte, A., Hunt, M., Kalikstein, A., Mechalakos, J., Happersett, L., Deasy, J. O. & Zelefsky, M. J., 1 Feb 2014, In: Radiotherapy & Oncology. 110, 2, p. 251-255

    Research output: Contribution to journal › Journal article › Research › peer-review

  105. Published

    Oxidative stress and inflammation generated DNA damage by exposure to air pollution particles

    Møller, Peter, Danielsen, P. H., Karottki, D. G., Jantzen, K., Roursgaard, Martin, Klingberg, H., Jensen, Ditte Marie, Christophersen, D. V., Hemmingsen, J. G., Cao, Y. & Loft, Steffen, 2014, In: Mutation Research - Reviews. 762, p. 133-166 34 p.

    Research output: Contribution to journal › Review › Research › peer-review

  106. Published

    Effect of supercoiling on the λ switch

    Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 1 Jan 2014, In: Bacteriophage. 4, 2, p. 1-5 5 p., e27517.

    Research output: Contribution to journal › Journal article › Research › peer-review

  107. Published

    Tethered particle analysis of supercoiled circular DNA using peptide nucleic acid handles

    Norregaard, K., Andersson, M., Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., Sep 2014, In: Nature Protocols (Print). 9, 9, p. 2206-23 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  108. Published

    Optical manipulation of single molecules in the living cell

    Nørregaard, K., Jauffred, Liselotte, Berg-Sørensen, K. & Oddershede, L. B., 10 Mar 2014, In: Physical Chemistry Chemical Physics. 16, 25, p. 12614-12624

    Research output: Contribution to journal › Journal article › Research › peer-review

  109. Published

    Jamming Transition in Kinetically Constrained Models with Reflection Symmetry

    Ohta, H. & sasa, S., 1 Jun 2014, In: Journal of Statistical Physics. 155, 5, p. 827-842

    Research output: Contribution to journal › Journal article › Research › peer-review

  110. Published

    A detection system for an optical manipulation system for manipulating micro-particls or nano-particles of a sample by means of at least two optical traps

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 1 Dec 2014, Patent No. 70097, 1 Dec 2014

    Research output: Patent

  111. Published

    Crosstalk elimination in the detection of dual-beam optical tweezers by spatial filtering

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 1 May 2014, In: Review of Scientific Instruments. 85, 5, 053108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  112. Published

    Enabling accurate photodiode detection of multiple optical traps by spatial filtering: Optical Trapping and Optical Micromanipulation XI

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 16 Jun 2014, In: Proceedings of S P I E - International Society for Optical Engineering. 9164, p. 916411- 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  113. Published

    Simultaneous three-dimensional tracking of individual signals from multi-trap optical tweezers using fast and accurate photodiode detection

    Ott, D., Seyyed Reihani, S. N. & Oddershede, L. B., 22 Sep 2014, In: Optics Express. 22, 19, p. 23661-23672

    Research output: Contribution to journal › Journal article › Research › peer-review

  114. Published

    Sub-diffraction positioning of a two-photon excited and optically trapped quantum dot

    Jauffred, Liselotte, Kyrsting, A. H., Christensen, E. A., Seyyed Reihani, S. N. & Oddershede, L. B., 6 May 2014, In: Nanoscale. 6, 12, p. 6997-7003

    Research output: Contribution to journal › Journal article › Research › peer-review

  115. Published

    A specific assay for quantification of human C4c by use of an anti-C4c monoclonal antibody

    Pilely, K., Skjødt, Mikkel-Ole, Nielsen, C., Andersen, T. E., Louise Aabom, A., Vitved, L., Koch, C., Skjødt, K. & Palarasah, Y., Mar 2014, In: Journal of Immunological Methods. 405, p. 87-96 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  116. Published

    Long-range ordered vorticity patterns in living tissue induced by cell division

    Rossen, Ninna Struck, Tarp, J. M., Mathiesen, Joachim, Jensen, Mogens Høgh & Oddershede, L. B., 8 Dec 2014, In: Nature Communications. 5, 5720.

    Research output: Contribution to journal › Journal article › Research › peer-review

  117. Published

    Multi-neuronal activity and functional connectivity in cell assemblies

    Roudi, Y., Dunn, B. & Hertz, John, 8 Nov 2014, In: Current Opinion in Neurobiology. 32, p. 38-44

    Research output: Contribution to journal › Journal article › Research › peer-review

  118. Published

    Are Local Anesthetics and General Anesthetics Different?

    Sasse-Middelhoff, H., Zecchi, K. & Heimburg, Thomas Rainer, 28 Jan 2014, In: Biophysical Society. Annual Meeting. Abstracts. 106, 2, p. 705A-705A

    Research output: Contribution to journal › Journal article › Research › peer-review

  119. Published

    The Strength of Friendship Ties in Proximity Sensor Data

    Sekara, V. & Jørgensen, S. L., 7 Jul 2014, In: P L o S One. 9, 7

    Research output: Contribution to journal › Journal article › Research › peer-review

  120. Published

    A Mixed Incoherent Feed-Forward Loop Allows Conditional Regulation of Response Dynamics

    Semsey, S., 12 Mar 2014, In: P L o S One. 9, 3, e91243.

    Research output: Contribution to journal › Journal article › Research › peer-review

  121. Published

    Mutations in Transcriptional Regulators Allow Selective Engineering of Signal Integration Logic

    Semsey, S., 25 May 2014, In: mBio (Print). 5, 3, e01171.

    Research output: Contribution to journal › Journal article › Research › peer-review

  122. Published

    Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes

    Shah, P., Cho, S. K., Thulstrup, Peter Waaben, Bhang, Y., Ahn, J. C., Choi, S. W., Rørvig-Lund, A. & Yang, S. W., 2014, In: Nanotechnology. 25, 4, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  123. Published

    Mismatch repair at stop codons is directed independent of GATC methylation on the Escherichia coli chromosome

    Sneppen, Kim & Semsey, S., 5 Dec 2014, In: Scientific Reports. 4, 7436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  124. Published

    Models of life: Dynamics and regulation in biological systems

    Sneppen, Kim, 5 Oct 2014, Cambridge University Press ed. Cambridge. 342 p.

    Research output: Book/Report › Book › Research › peer-review

  125. Published

    A kinetic mechanism for cell sorting based on local variations in cell motility

    Strandkvist, C., Juul, J., Baum, B., Kabla, A. J. & Duke, T., 6 Dec 2014, In: Interface Focus. 4, 6, 20140013.

    Research output: Contribution to journal › Journal article › Research › peer-review

  126. Published

    Asymmetric Segregation of Damaged Cellular Components in Spatially Structured Multicellular Organisms

    Strandkvist, C., Juul, J. S. & Bendtsen, K. M., 13 Feb 2014, In: PLoS ONE. 9, 2, e87917.

    Research output: Contribution to journal › Journal article › Research › peer-review

  127. Published

    Commitment to lysogeny is preceded by a prolonged period of sensitivity to the late lytic regulator Q in bacteriophage Λ

    Svenningsen, Sine Lo & Semsey, S., 2014, In: Journal of Bacteriology. 196, 20, p. 3582-3588 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  128. Published

    Intermittent dislocation density fluctuations in crystal plasticity from a phase-field crystal model

    Tarp, J. M., Angheluta, L., Mathiesen, Joachim & Goldenfeld, N., 31 Dec 2014, In: Physical Review Letters. 113, 26, 265503.

    Research output: Contribution to journal › Journal article › Research › peer-review

  129. Published

    Model Study of the Pressure Build-Up during Subcutaneous Injection

    Thomsen, M., Hernandez Garcia, A., Mathiesen, Joachim, Poulsen, Mette Homann, Sørensen, D., Tarnow, L. & Feidenhans'l, Robert Krarup, 14 Aug 2014, In: PLoS ONE. 9, 8, e104054.

    Research output: Contribution to journal › Journal article › Research › peer-review

  130. Published

    Monte Carlo Methods Development and Applications in Conformational Sampling of Proteins

    Tian, P., 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  131. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  132. Published

    Forging the flow of the quantum mechanical current in quantum dots

    Tighineanu, P., Stobbe, S. & Lodahl, Peter, 2014, Proceedings of the Nonlinear optics and excitation kinetics in semiconductors, Bremen, Germany. Bremen, Germany

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  133. Published

    probing electric and magnetic vacuum fluctuations with quantum dots

    Tighineanu, P., Sørensen, Anders Søndberg, Stobbe, S. & Lodahl, Peter, 2014, Nonlinear quantum optics : Workshop, Leiden, the Netherlands, 2014. Leiden, Netherlands

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  134. Published

    Stress induced telomere shortening: longer life with less mutations?

    Trusina, Ala, 1 Mar 2014, In: B M C Systems Biology. 8, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  135. Published

    NETWORK INFERENCE WITH HIDDEN UNITS

    Tyrcha, J. & Hertz, John, 1 Feb 2014, In: Mathematical Biosciences and Engineering. 11, 1, p. 149-165

    Research output: Contribution to journal › Journal article › Research › peer-review

  136. Published

    Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

    Valentin, J., Andreetta, C., Boomsma, Wouter, Bottaro, S., Ferkinghoff-Borg, J., Frellsen, J., Mardia, K. V., Tian, P. & Hamelryck, Thomas Wim, 2014, In: Proteins: Structure, Function, and Bioinformatics. 82, 2, p. 288-299 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  137. Published

    Time-dependent Taylor-Aris dispersion of an initial point concentration

    Vedel, S., Hovad, E. & Bruus, H., 2014, In: Journal of Fluid Mechanics. 752, p. 107-122 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  138. Published

    Spatial Structures and Regulation in Biological Systems

    Yde, Pernille, 2014, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 167 p.

    Research output: Book/Report › Ph.D. thesis › Research

  139. Published

    L-1 regularization for reconstruction of a non-equilibrium Ising model

    Zeng, H. L., Hertz, John & Roudi, Y., 2 Oct 2014, In: Physica Scripta. Topical Issues. 89, 10, 105002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  140. 2013
  141. Published

    3 Dimensional Cellular Force Microscopy in Fibrin Gels

    Adhikari, A., Leijnse, Natascha, Owen, L., Oddershede, L. B. & Dunn, A. R., 29 Jan 2013, In: Biophysical Journal. 104, 2,Supp. 1, p. 214A-214A

    Research output: Contribution to journal › Journal article › Research › peer-review

  142. Published

    Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes

    Alsing, A. & Sneppen, Kim, 1 May 2013, In: Nucleic Acids Research. 41, 9, 4755-4764.

    Research output: Contribution to journal › Journal article › Research › peer-review

  143. Published

    Strong increase in convective precipitation in response to higher temperatures

    Berg, P., Moseley, C. & Härter, Jan Olaf Mirko, 1 Mar 2013, In: Nature Geoscience. 6, 3, p. 181-185 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  144. Published

    Rotation-induced grain growth and stagnation in phase-field crystal models

    Bjerre, M., Tarp, J. M., Angheluta, L. & Mathiesen, Joachim, 15 Aug 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 88, 2, 4 p., 020401.

    Research output: Contribution to journal › Journal article › Research › peer-review

  145. Published

    Three-dimensional MRI-linac intra-fraction guidance using multiple orthogonal cine-MRI planes

    Bjerre, T., Crijns, S., Munck af Rosenschöld, P. M., Aznar, M. C., Specht, Lena, Larsen, R. & Keall, P., 21 Jul 2013, In: Physics in Medicin and biology. 58, 14, p. 4943-4950

    Research output: Contribution to journal › Journal article › Research › peer-review

  146. Published

    Voltage-gated lipid ion channels

    Blicher, A. & Heimburg, Thomas Rainer, 2013, In: P L o S One. 8, 6, e65707.

    Research output: Contribution to journal › Journal article › Research › peer-review

  147. Published

    Physicians compliance during maintenance therapy in children with Down syndrome and acute lymphoblastic leukemia

    Bohnstedt, C., Levinsen, Mogens, Rosthøj, Susanne, Zeller, B., Taskinen, M., Hafsteinsdottir, S., Björgvinsdóttir, H., Heyman, M., Schmiegelow, Kjeld & Nordic Society of Pediatric Hematology and Oncology (NOPHO), N. S. O. P. H. A. O. (., 2013, In: Leukemia. 27, 4, p. 866-70 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  148. Published

    PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure

    Boomsma, Wouter, Frellsen, J., Harder, T. P., Bottaro, S., Johansson, Kristoffer Enøe, Tian, P., Stovgaard, K., Andreetta, C., Olsson, S., Valentin, J., Antonov, L. D., Christensen, A. S., Borg, M., Jensen, Jan Halborg, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2013, In: Journal of Computational Chemistry. 34, 19, p. 1697-1705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  149. Published

    Foot-and-mouth disease virus serotype O phylodynamics: genetic variability associated with epidemiological factors in Pakistan

    Brito, B. P., Gonzalez-Perez, Alfredo, Jamal, S. M., Belsham, Graham John, Pauszek, S. J., Ahmed, Z. & Rodriguez, L. L., Dec 2013, In: Transboundary and Emerging Diseases. 60, 6, p. 516-24 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  150. Published

    Impact of Treatment Margins and Treatment Technique in Hippocampal Sparing Radiation Therapy for Pediatric Medulloblastoma

    Brodin, N. P., Munck af Rosenschöld, P. M., Berthelsen, A. K., Vogelius, I., Hollensen, C., Blomstrand, M., Bentzen, S. M. & Bjork-Eriksson, T., 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. S595-S595

    Research output: Contribution to journal › Journal article › Research › peer-review

  151. Published

    Modeling freedom from progression for standard-risk medulloblastoma: a mathematical tumor control model with multiple modes of failure

    Brodin, N. P., Vogelius, I. R., Bjørk-Eriksson, T. & Munck af Rosenschöld, P. M., 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. 422-429

    Research output: Contribution to journal › Journal article › Research › peer-review

  152. Published

    Risk-based optimization of photon and proton radiotherapy for pediatric medulloblastoma

    Brodin, N. P., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 45 p.

    Research output: Book/Report › Ph.D. thesis › Research

  153. Published

    Reconstitution of Cholesterol-Dependent Vaginolysin into Tethered Phospholipid Bilayers: Implications for Bioanalysis

    Budvytyte, R., Pleckaityte, M., Zvirbliene, A., Vanderah, D. J. & Valincius, G., 13 Dec 2013, In: PLOS ONE. 8, 12, 13 p., e82536.

    Research output: Contribution to journal › Journal article › Research › peer-review

  154. Published

    Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy

    Cataudella, I., Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 1 Aug 2013, In: PLoS Computational Biology. 9, 8, e1003174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  155. Published

    Toxin-Antitoxin Battle in Bacteria

    Cataudella, I., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Ph.D. thesis › Research

  156. Published

    Dose escalation to high-risk sub-volumes based on non-invasive imaging of hypoxia and glycolytic activity in canine solid tumors: a feasibility study

    Clausen, Malene Martini, Hansen, A. E., Munck af Rosenschöld, P. M., Kjær, Andreas, Kristensen, Annemarie T., McEvoy, Fintan & Engelholm, S. A., 7 Nov 2013, In: Radiation Oncology. 8, 262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  157. Published

    Reduced lung dose and improved inspiration level reproducibility in visually guided DIBH compared to audio coached EIG radiotherapy for breast cancer patients

    Damkjær, S. M. S., Aznar, M. C., Pedersen, A. N., Vogelius, I. P., Bangsgaard, J. P. & Josipovic, M., 1 Oct 2013, In: Acta Oncologica. 52, 7, p. 1458-1463

    Research output: Contribution to journal › Journal article › Research › peer-review

  158. Published

    A novel complex: a quantum dot conjugated to an active T7 RNA Polymerase

    Eriksen, M., Horvath, P., Sørensen, Michael Askvad, Semsey, S., Oddershede, L. B. & Jauffred, Liselotte, 2013, In: Journal of Nanomaterials. 2013, 9 p., 468105.

    Research output: Contribution to journal › Journal article › Research › peer-review

  159. Published

    Energetics and efficiency of a molecular motor model

    Fogedby, H. C. & Svane, A., 2 Dec 2013, In: Journal of Statistical Mechanics: Theory and Experiment. 2013, P12001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  160. Published

    Binding of the N-terminal domain of the lactococcal bacteriophage TP901-1 CI repressor to its target DNA: a crystallography, small angle scattering, and nuclear magnetic resonance study

    Frandsen, Kristian Erik Høpfner, Rasmussen, K. K., Jensen, M. R., Hammer, K., Pedersen, M., Poulsen, Jens-Christian Navarro, Arleth, Lise & Lo Leggio, Leila, 2013, In: Biochemistry. 52, 39, p. 6892-6904 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  161. Published

    Patient QA systems for rotational radiation therapy: A comparative experimental study with intentional errors

    Fredh, A., Scherman, J. B. & Munck af Rosenschöld, P. M., 1 Mar 2013, In: Medical Physics. 40, 3, 031716.

    Research output: Contribution to journal › Journal article › Research › peer-review

  162. Published

    Noisy transcription factor NF-¿B oscillations stabilize and sensitize cytokine signaling in space

    Gangstad, S. W., Feldager, C. W., Juul, J. S. & Trusina, Ala, 5 Feb 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 87, 2, p. 022702

    Research output: Contribution to journal › Journal article › Research › peer-review

  163. Published

    Clustering Determines Who Survives for Competing Brownian and Levy Walkers

    Heinsalu, E., Hernandez-Garcia, E. & Cristobal, L., 18 Jun 2013, In: Physical Review Letters. 110, 25, 258101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  164. Published

    konkureerivad Browni ja Levy uitlejad

    Heinsalu, E., 1 Feb 2013, In: Estonian Physical Society. p. 81-95

    Research output: Contribution to journal › Journal article › Research › peer-review

  165. Published

    Decisions on foot-and-mouth disease control informed by model prediction

    Hisham Beshara Halasa, T., Willeberg, P., Christiansen, L. E., Boklund, Anette, Alkhamis, M., Gonzalez-Perez, Alfredo & Enøe, C., 2013, Society for Veterinary Epidemiology and Preventive Medicine. Verheyen, K. L. P., Fourichon, C. & Committee, SVEPM. (eds.). Society for Veterinary Epidemiology and Preventive Medicine, p. 13-22 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  166. Published

    Moderate stem-cell telomere shortening rate postpones cancer onset in a stochastic model

    Holbek, S., Bendtsen, K. M. & Juul, J. S., 21 Oct 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 88, 4, p. 1-7 7 p., 042706.

    Research output: Contribution to journal › Journal article › Research › peer-review

  167. Published

    Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat

    Jakociunas, T., Domange Jordö, M. E., Mebarek, M. A., Bünner, C. M., Hansen, J. V., Oddershede, L. B. & Thon, Genevieve, 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 47, p. E4465-E4473 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  168. Published

    Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

    Jakociunas, T., Holm, L. R., Hansen, J. V., Trusina, Ala & Thon, Genevieve, 2013, In: P L o S Genetics. 9, 10, 14 p., e1003762.

    Research output: Contribution to journal › Journal article › Research › peer-review

  169. Published

    Anomalous diffusion and power-law relaxation of the time averaged mean squared displacement in worm-like micellar solutions

    Joen, J., Leijnse, Natascha, Oddershede, L. B. & Metzler, R., 17 Apr 2013, In: New Journal of Physics. 15, p. 045011

    Research output: Contribution to journal › Journal article › Research › peer-review

  170. Published

    Deep inspiration breath hold radiotherapy for locally advanced lung cancer: Comparison of different treatment techniques on target coverage, lung dose and treatment delivery time

    Josipovic, Mirjana, Persson, Gitte F., Hakansson, K., Bangsgaard, J. P., Damkjær, S. M., Westman, G., Specht, Lena & Aznar, M. C., 1 Oct 2013, In: Acta Oncologica. 52, 7, p. 1582-1586

    Research output: Contribution to journal › Journal article › Research › peer-review

  171. Published

    Labyrinthine clustering in a spatial rock-paper-scissors ecosystem

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 8 Apr 2013, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 87, 4, p. 042702 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  172. Published

    Replicator dynamics with turnover of players

    Juul, J. S., Kianercy, A., Bernhardsson, S. & Pigolotti, S., 8 Aug 2013, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 88, 2, 9 p., 022806.

    Research output: Contribution to journal › Journal article › Research › peer-review

  173. Published

    The effect on esophagus after different radiotherapy techniques for early stage Hodgkin's lymphoma

    Jørgensen, A., Maraldo, M., Brodin, N. P., Aznar, M. C., Voglius, I. R., Petersen, P. M., Munck af Rosenschöld, P. M. & Specht, Lena, 1 Oct 2013, In: Acta Oncologica. 52, 7, p. 1559-1565

    Research output: Contribution to journal › Journal article › Research › peer-review

  174. Published

    Shear and Rapeseed Oil Addition Affect the Crystal Polymorphic Behavior of Milk Fat

    Kaufmann, N., Kirkensgaard, Jacob Judas Kain, Andersen, U. & Wiking, L., 1 Jun 2013, In: Journal of the American Oil Chemists' Society. 90, 6, p. 871-880

    Research output: Contribution to journal › Journal article › Research › peer-review

  175. Published

    Mapping 3D focal intensity exposes the stable trapping positions of single nanoparticles

    Kyrsting, A., Bendix, Poul Martin & Oddershede, L. B., 9 Jan 2013, In: Nano Letters. 13, 1, p. 31-35 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  176. Published

    Using Focal Point Intensity Distributions to Track Nanoparticle Positions an Fibril Networks

    Kyrsting, A. H., 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  177. Published

    Genetic Regulatory Networks that count to 3

    Lehmann, M. & Sneppen, Kim, 1 Jul 2013, In: Journal of Theoretical Biology. 329, p. 15-19 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  178. Published

    Optical investigation of intra- and extra-cellular dynamics

    Leijnse, Natascha, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 132 p.

    Research output: Book/Report › Ph.D. thesis › Research

  179. Published

    Concomitance in single bubble sonoluminescence of period doubling in emission and shape distortion

    Levinsen, Mogens, 10 Sep 2013, In: Ultrasonics. 54, 2, p. 637-643

    Research output: Contribution to journal › Journal article › Research › peer-review

  180. Published

    Effects of City-Size Heterogeneity on Epidemic Spreading in a Metapopulation: A Reaction-Diffusion Approach

    Lund, H., Lizana, G. L. & Simonsen, I., 1 Apr 2013, In: Journal of Statistical Physics. 151, 2, p. 367-382

    Research output: Contribution to journal › Journal article › Research › peer-review

  181. Published

    Doses to Carotid Arteries After Modern Radiation Therapy for Hodgkin Lymphoma: Is Stroke Still a Late Effect of Treatment?

    Maraldo, M. V., Brodin, N. P., Aznar, M. C., Petersen, P. M., Munck af Rosenschöld, P. M. & Specht, Lena, 1 Oct 2013, In: International Journal of Radiation Oncology, Biology, Physics. 87, 2, p. 297-303

    Research output: Contribution to journal › Journal article › Research › peer-review

  182. Published

    Estimated risk of cardiovascular disease and secondary cancers with modern highly conformal radiotherapy for early-stage mediastinal Hodgkin lymphoma

    Maraldo, M. V., Brodin, N. P., Aznar, M. C., Vogelius, I. R., Munck af Rosenschöld, P. M., Petersen, P. M. & Specht, Lena, 1 Aug 2013, In: Annals of Oncology. 24, 8, p. 2113-2118

    Research output: Contribution to journal › Journal article › Research › peer-review

  183. Published

    "Want to understand the stock market? Just log in to Twitter"

    Mathiesen, Joachim & Angheluta, L., 24 Oct 2013, In: The Conversation.

    Research output: Contribution to journal › Contribution to newspaper - Newspaper article › Communication

  184. Published

    Excitable human dynamics driven by extrinsic events in massive communities

    Mathiesen, Joachim, Angheluta, L., Ahlgren, P. T. H. & Jensen, Mogens Høgh, 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17259-17262

    Research output: Contribution to journal › Journal article › Research › peer-review

  185. Published

    Control of ribosome traffic by position-dependent choice of synonymous codons

    Mitarai, Namiko & Pedersen, Steen, 8 Oct 2013, In: Physical Biology. 10, 5, 056011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  186. Published

    Entrainment of noise-induced and limit cycle oscillators under weak noise

    Mitarai, Namiko, Alon, U. & Jensen, Mogens Høgh, 1 Jun 2013, In: Chaos. 23, 2, 023125.

    Research output: Contribution to journal › Journal article › Research › peer-review

  187. Published

    Probing the precipitation life cycle by iterative rain cell tracking

    Moseley, C., Berg, P. & Härter, Jan Olaf Mirko, 27 Dec 2013, In: Journal of Geophysical Research: Atmospheres. 118, 24, p. 13361-13370

    Research output: Contribution to journal › Journal article › Research › peer-review

  188. Published

    Fluctuations of systems in finite heat reservoirs with applications to phase transitions in lipid membranes

    Mosgaard, L. D., Jackson, Andrew D. & Heimburg, Thomas Rainer, 25 Sep 2013, In: Journal of Chemical Physics. 139, 12, 125101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  189. Published

    Lipid Ion Channels and the Role of Proteins

    Mosgaard, L. D. & Heimburg, Thomas Rainer, 31 Jul 2013, In: Accounts of Chemical Research. 46, 12, p. 2966-2976

    Research output: Contribution to journal › Journal article › Research › peer-review

  190. Published

    Complex Langevin dynamics for chiral random matrix theory

    Møllgaard, A. E. & Splittorff, Kim, 9 Dec 2013, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). 88, 11, 12 p., 116007.

    Research output: Contribution to journal › Journal article › Research › peer-review

  191. Published

    Experimental observation of shear thickening oscillation

    Nagahiro, S., Nakanishi, H. & Mitarai, Namiko, 1 Oct 2013, In: EPL. 104, 2, 28002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  192. Published

    Wildtype and A30P mutant alpha-synuclein form different fibril structures

    Nielsen, S. B., Macchi, F., Raccosta , S., Langkilde, Annette Eva, Giehm, L., Kyrsting, A. H., Svane, A. S. P., Manno, M., Christiansen, G., Nielsen, N. C., Oddershede, L. B., Vestergaard, Bente & Otzen, D., 2013, In: PLOS ONE. 8, 7, e67713.

    Research output: Contribution to journal › Journal article › Research › peer-review

  193. Published

    DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch

    Norregaard, K., Andersson, M., Sneppen, Kim, Nielsen, Peter E., Brown, Stanley & Oddershede, L. B., 22 Oct 2013, In: Proceedings of the National Academy of Sciences USA (PNAS). 110, 43, p. 17386-91 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  194. Published

    Revealing Hidden Dynamics within Living Soft Matter

    Ott, D., Bendix, Poul Martin & Oddershede, L. B., 11 Oct 2013, In: A C S Nano. 7, 10, p. 8333-8339

    Research output: Contribution to journal › Journal article › Research › peer-review

  195. Published

    A Versatile Approach towards the Compaction, Decompaction, and Immobilization of DNA at Interfaces by Using Cyclodextrins

    Gonzalez-Perez, Alfredo & Ruso, J. M., 5 Aug 2013, In: ChemPhysChem. 14, 11, p. 2544-2553

    Research output: Contribution to journal › Journal article › Research › peer-review

  196. Published

    Changes in self-assemblies induced by temperature, concentration and light

    Gonzalez-Perez, Alfredo & Sanchez-Dominguez, M., 1 Jan 2013, In: Frontiers in bioscience (Scholar edition). 5, p. 611-630

    Research output: Contribution to journal › Journal article › Research › peer-review

  197. Published

    Mechanical Signals in Nerves during Action Potential Propagation

    Gonzalez-Perez, Alfredo & Heimburg, Thomas Rainer, 29 Jan 2013, In: Biophysical Journal. 104, 2, p. 78A-78A

    Research output: Contribution to journal › Journal article › Research › peer-review

  198. Published

    Proteins and Peptides in Biomimetic Polymeric Membranes

    Gonzalez-Perez, Alfredo, 5 Mar 2013, Proteins in Solution and at Interface: Methods and Applications in Biotechnology and Materials Science. Ruso, J. M. & Piñeiro, A. (eds.). Hoboken, NJ, USA. : Wiley, p. 283-290 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  199. Published

    Quality control system response to stochastic growth of amyloid fibrils

    Pigolotti, S., Lizana, L., Sneppen, Kim & Otzen, D., 2 May 2013, In: F E B S Letters. 587, 9, p. 1405-1410 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  200. Published

    Growth, competition and cooperation in spatial population genetics

    Pigolotti, S., Benzi, R., Perlekar, P., Jensen, Mogens Høgh, Toschi, F. & Nelson, D. R., 1 Mar 2013, In: Theoretical Population Biology. 84, p. 72-86

    Research output: Contribution to journal › Journal article › Research › peer-review

  201. Published

    Dosimetric benefit of DMLC tracking for conventional and sub-volume boosted prostate intensity-modulated arc radiotherapy

    Pommer, T., Falk, M., Poulsen, P. R., Keall, P. J., O'Brien, R. T., Petersen, P. M. & Munck af Rosenschöld, P. M., 7 Apr 2013, In: Physics in Medicine and Biology. 58, 7, p. 2349-2361

    Research output: Contribution to journal › Journal article › Research › peer-review

  202. Published

    The impact of leaf width and plan complexity on DMLC tracking of prostate intensity modulated arc therapy

    Pommer, T., Falk, M., Poulsen, P. R., Keall, P. J., O'Brien, R. T. & Munck af Rosenschöld, P. M., 1 Nov 2013, In: Medical Physics. 40, 11, 111717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  203. Published

    The role of Rydberg states in photoionization of NO2 and (NO+, O-) ion pair formation induced by one VUV photon

    Poullian, S. M., Veyrinas, K., Billaud, P., Lebech, M., Picard, Y., Lucchese, R. R. & Dowek, D., 28 Jul 2013, In: Journal of Chemical Physics. 139, 4, 044311.

    Research output: Contribution to journal › Journal article › Research › peer-review

  204. Published

    FBAR syndapin 1 recognizes and stabilizes highly curved tubular membranes in a concentration dependent manner

    Ramesh, P., Farhangibarooji, Younes, Seyyed Reihani, S. N., Stamou, Dimitrios, Oddershede, L. B. & Bendix, Poul Martin, 31 Jan 2013, In: Scientific Reports. 3, p. 1565-(1-6)

    Research output: Contribution to journal › Journal article › Research › peer-review

  205. Published

    Optical Investigations of Endothelial Cell Motility

    Rossen, Ninna Struck, 2013, The Niels Bohr Institute, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  206. Published

    Regulatory genes

    Semsey, S. & Adhya, S., 2013, Brenner’s online encyclopedia of genetics (Second edition). Maloy, S. & Hughes, K. (eds.). Academic Press, 119 p. 4

    Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review

  207. Published

    The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli

    Semsey, S., Jauffred, Liselotte, Csiszovszki, Z., Erdossy, J., Steger, V., Hansen, S. & Krishna, S., 1 Jul 2013, In: Nucleic Acids Research. 41, 13, p. 6381-6390

    Research output: Contribution to journal › Journal article › Research › peer-review

  208. Published

    Comparative network analysis of preterm vs. full-term infant-mother interactions

    Sipos, L., Mengel, A. B., Kalmar, M., Toth, I., Krishna, S., Jensen, Mogens Høgh & Semsey, S., 2013, In: P L o S One. 8, 6, 10 p., e67183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  209. Published

    Quantitative determination of optical trapping strength and viscoelastic moduli inside living cells

    Soler, J. M., Richardson, A. C., Seyyed Reihani, S. N., Oddershede, L. B. & Berg-Sørensen, K., 1 Aug 2013, In: Physical Biology. 10, 4, 046006.

    Research output: Contribution to journal › Journal article › Research › peer-review

  210. Published

    The dynamics of genetic control in the cell: the good and bad of being late

    Tiana, G. & Jensen, Mogens Høgh, 28 Sep 2013, In: Philosophical Transactions. Series A : Mathematical, physical, and engineering science. 371, 1999; SI, 20120469.

    Research output: Contribution to journal › Journal article › Research › peer-review

  211. Published

    The effect of nonstationarity on models inferred from neural data

    Tyrcha, J., Roudi, Y. & Hertz, John, 1 Mar 2013, In: Journal of Statistical Mechanics: Theory and Experiment. 2013, P03005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  212. Published

    Variations in interpulse interval of double action potentials during propagation in single neurons

    Villagran-Vargas, E., Rodriguez-Sosa, L., Hustert, R., Blicher, A., Laub, K. R. & Heimburg, Thomas Rainer, 2013, In: Synapse. 67, 2, p. 68-78 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  213. Published

    Maximum Likelihood Reconstruction for Ising Models with Asynchronous Updates

    Zeng, H., Alava, M., Aurell, E., Hertz, John & Roudi, Y., 20 May 2013, In: Physical Review Letters. 110, 21, 210601.

    Research output: Contribution to journal › Journal article › Research › peer-review

  214. 2012
  215. Published

    Models of epigenetics: BI-   and multi-stability in biological systems

    Alsing, A., 1 Nov 2012, The Niels Bohr Institute, Faculty of Science, University of Copenhagen. 143 p.

    Research output: Book/Report › Ph.D. thesis › Research

  216. Published

    Compaction of porous rock by dissolution on discrete stylolites: A one-dimensional model

    Angheluta, L., Mathiesen, Joachim & Aharonov, E., 10 Aug 2012, In: Journal of Geophysical Research: Biogeosciences. 117, p. B08203 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  217. Published

    Organic-inorganic nanocomposite gels as an in situ gelation biomaterial for injectable accommodative intraocular lens

    Annaka, M., Mortensen, Kell, Matsuura, T., Ito, M., Nochioka, K. & Ogata, N., 2012, In: Soft Matter. 8, 27, p. 7185-7196 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  218. Published

    A comparison of the Hodgkin-Huxley model and the soliton theory for the action potential in nerves

    Appali, R., van Rienen, U. & Heimburg, Thomas Rainer, 2012, In: Advances in Planar Lipid Bilayers and Liposomes. 16, p. 275-299

    Research output: Contribution to journal › Journal article › Research › peer-review

  219. Published

    Soliton collision in biomembranes and nerves - A stability study.

    Appali, R., Lautrup, B. E., Heimburg, Thomas Rainer & van Rienen, U., 2012, In: Journal of Mathematics in Industry. 16, p. 205-212

    Research output: Contribution to journal › Journal article › Research › peer-review

  220. Published

    Correction to; Why Do Phage Play Dice? (vol 83, pg 11416, 2009)

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 1 Mar 2012, In: Journal of Virology. 86, 5, p. 22898-2898 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  221. Published

    Danske Universiteter 2020: Hvidbog til Forskningspolitisk årsmøde 2012, Det Kongelige Danske Videnskabernes Selskab

    Bache, C., Christiansen, F. B., Løkke, Anne, Smith, N. & Sneppen, Kim, 2012, Det Kongelige Danske Videnskabernes Selskab. 50 p.

    Research output: Book/Report › Report › Commissioned

  222. Published

    Fragile DNA Repair Mechanism Reduces Ageing in Multicellular Model

    Bendtsen, K. M., Juul, J. S. & Trusina, Ala, 2 May 2012, In: P L o S One. 7, 5, p. e36018

    Research output: Contribution to journal › Journal article › Research › peer-review

  223. Published

    Population dynamics in compressible flows

    Benzi, R., Jensen, Mogens Høgh, Nelson, D. R., Perlekar, P., Pigolotti, S. & Toschi, F., 17 Apr 2012, In: European Physical Journal. Special Topics. 204, 1, p. 57-74

    Research output: Contribution to journal › Journal article › Research › peer-review

  224. Published

    Protein Localization with Flexible DNA or RNA

    Bernhardsson, P. J. S., Mitarai, Namiko & Sneppen, Kim, 10 Feb 2012, In: PLoS.ONE.. 7, 2, p. e29218

    Research output: Contribution to journal › Journal article › Research › peer-review

  225. Published

    Conditional Cooperativity in Toxin-Antitoxin Regulation Prevents Random Toxin Activation and Promotes Fast Translational Recovery

    Cataudella, I., Trusina, Ala, Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 11 Apr 2012, In: Nucleic Acids Research. 40, 14, p. 6424-6434

    Research output: Contribution to journal › Journal article › Research › peer-review

  226. Published

    Limit-cycle oscillations and stable patterns in repressor lattices

    Chakraborty, S., Jensen, Mogens Høgh, Krishna, S., Mengel, A. B., Pigolotti, S., Sekara, V. & Semsey, S., 7 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, p. 031905 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  227. Published

    Acyl-homoserine lactone-dependent eavesdropping promotes competition in a laboratory co-culture mode

    Chandler, J. R., Mittler, J. E., Greenberg, E. P. & Heilmann, Silja, 1 Dec 2012, In: ISME Journal. 6, 12, p. 2219-2228 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  228. Published

    Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression

    Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  229. Published

    AXELROD MODEL WITH EXTENDED CONSERVATIVENESS

    Dybiec, B. M., 1 Dec 2012, In: International Journal of Modern Physics C. 23, 12, p. 1250086 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  230. Published

    Axelrod model: accepting or discussing

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 1 Oct 2012, In: European Physical Journal B. Condensed Matter and Complex Systems. 85, 10, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  231. Published

    Fluctuation-dissipation relations under Levy noises

    Dybiec, B. M., Parrondo, J. M. R. & Gudowska-Nowak, E., 1 Jun 2012, In: EPL. 98, 5, p. 50006

    Research output: Contribution to journal › Journal article › Research › peer-review

  232. Published

    Information spreading and development of cultural centers

    Dybiec, B. M., Mitarai, Namiko & Sneppen, Kim, 18 May 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 85, 5, p. 056116 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  233. Published

    Physics of non-equilibrium membranes

    Feld, K. E., 2012, Biophysics-Membranes: Faculty of Science, University of Copenhagen. 134 p.

    Research output: Book/Report › Ph.D. thesis › Research

  234. Published

    Heat flow in chains driven by thermal noise

    Fogedby, H. C. & Imparato, A., 5 Apr 2012, In: Journal of Statistical Mechanics: Theory and Experiment. 2012, p. P04005

    Research output: Contribution to journal › Journal article › Research › peer-review

  235. Published

    Validation and Analysis of Forward Osmosis CFD Model in Complex 3D Geometries

    Gruber, M. F., Johnson, C. J., Tang, C. Y., Jensen, Mogens Høgh, Yde, L. & Helix-Nielsen, C., 9 Nov 2012, In: Membranes. 2, 4, p. 764-782

    Research output: Contribution to journal › Journal article › Research › peer-review

  236. Published

    mRNA pseudoknot structures can act as ribosomal roadblocks

    Hansen, J. T., Oddershede, L. B. & Sørensen, Michael Askvad, 2012, In: Nucleic Acids Research. 40, 1, p. 303-313 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  237. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12828-33 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  238. Published

    Coexistence of phage and bacteria on the boundary of self-organized refuges

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 31 Jul 2012, In: Proceedings of the National Academy of Science of the United States of America. 109, 31, p. 12828-12833

    Research output: Contribution to journal › Journal article › Research › peer-review

  239. Published

    Coexistence, cooperation and communication: modeling the complex lives of bacteria

    Heilmann, Silja, 2012, Københavns Universitet, Niels Bohr Institute ed. København, Danmark. 222 p.

    Research output: Book/Report › Ph.D. thesis › Research

  240. Published

    The Capacitance and Electromechanical Coupling of Lipid Membranes Close to Transitions: The Effect of Electrostriction

    Heimburg, Thomas Rainer, 5 Sep 2012, In: Biophysical Journal. 103, 5, p. 918-929

    Research output: Contribution to journal › Journal article › Research › peer-review

  241. Published

    Communication dynamics in finite capacity social networks

    Härter, Jan Olaf Mirko, Jamtveit, B. & Mathiesen, Joachim, 15 Oct 2012, In: Physical Review Letters. 109, 16, p. 168701 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  242. Published

    Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus

    Härter, Jan Olaf Mirko & Sneppen, Kim, 1 Aug 2012, In: mBio. 3, 4, p. e00126

    Research output: Contribution to journal › Journal article › Research › peer-review

  243. Published

    Inducing phase-locking and chaos in cellular oscillators by modulating the driving stimuli

    Jensen, Mogens Høgh & Krishna, S., 4 Jun 2012, In: FEBS Letters. 586, 11, p. 1664-1668

    Research output: Contribution to journal › Journal article › Research › peer-review

  244. Published

    Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game

    Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  245. Published

    Photothermal heating of optically trapped gold nanoparticles quantified using controlled vesicle cargo release: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA )

    Kyrsting, A. H., Bendix, Poul Martin & Oddershede, L. B., 1 Oct 2012, In: Proceedings of SPIE. 8458, p. 84580X

    Research output: Contribution to journal › Conference article › Research › peer-review

  246. Published

    Comparing ion conductance recordings of synthetic lipid bilayers with cell membranes containing TRP channels

    Laub, K. R., Witschas, K., Blicher, A., Madsen, S. B., Lückhoff, A. & Heimburg, Thomas Rainer, 2012, In: BBA General Subjects. 1818, 5, p. 1123-1134

    Research output: Contribution to journal › Journal article › Research › peer-review

  247. Published

    Diffusion inside living human cells

    Leijnse, Natascha, Jeon, J. -., Loft, Steffen, Metzler, R. & Oddershede, L. B., 1 Apr 2012, In: European Physical Journal. Special Topics. 204, 1, p. 75-84 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  248. Published

    IRE1 alpha Induces Thioredoxin-Interacting Protein to Activate the NLRP3 Inflammasome and Promote Programmed Cell Death under Irremediable ER Stress

    Lerner, A. G., Upton, J., Praveen, P. V. K., Ghosh, R., Nakagawa, Y., Igbaria, A., Shen, S., Nguyen, V., Bradley, B. J., Heiman, M. & Trusina, Ala, 8 Aug 2012, In: Cell Metabolism. 16, 2, p. 250-264 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  249. Published

    Segregation in water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 13 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, Part 2, p. 016309 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  250. Published

    Switching between oscillations and homeostasis in competing negative and positive feedback motifs

    Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210

    Research output: Contribution to journal › Journal article › Research › peer-review

  251. Published

    Large-Scale Orientation Dependent Heating from a Single Irradiated Gold Nanorod

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 2012, In: Nano Letters. 12, 8, p. 3954-3960 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  252. Published

    Measurements of extreme orientation-dependent temperature increase around an irradiated gold nanorod: From Conference ( Optical Trapping and Optical Micromanipulation IX San Diego, California, USA)

    Ma, H., Bendix, Poul Martin & Oddershede, L. B., 10 Oct 2012, In: Proceedings of SPIE. 8458, p. 84581R

    Research output: Contribution to journal › Conference article › Research › peer-review

  253. Published

    Efficacy of Lower-Body Shielding in Computed Tomography Fluoroscopy-Guided Interventions

    Mahnken, A. H., Sedlmair, M., Ritter, C., Banckwitz, R. & Flohr, T., 1 Dec 2012, In: Cardiovascular and Interventional Radiology. 35, 6, p. 1475-1479 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  254. Published

    Circuit architecture explains functional similarity of bacterial heat shock responses

    Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003

    Research output: Contribution to journal › Journal article › Research › peer-review

  255. Published

    Modular networks of word correlations on Twitter

    Mathiesen, Joachim, Yde, Pernille & Jensen, Mogens Høgh, 9 Nov 2012, In: Scientific Reports. 2, p. 814

    Research output: Contribution to journal › Journal article › Research › peer-review

  256. Published

    Effects of Growth and Mutation on Pattern Formation in Tissues

    Mengel, A. B., Krishna, S., Chakraborty, S., Pigolotti, S., Sekara, V., Semsey, S. & Jensen, Mogens Høgh, 9 Nov 2012, In: P L o S One. 7, 11, p. e48772

    Research output: Contribution to journal › Journal article › Research › peer-review

  257. Published

    Nested feedback loops in gene regulation

    Mengel, A. B., Krishna, S., Jensen, Mogens Høgh & Trusina, Ala, 1 Jan 2012, In: Physica A: Statistical Mechanics and its Applications. 391, 1-2, p. 100-106

    Research output: Contribution to journal › Journal article › Research › peer-review

  258. Published

    Emergence of diversity in a model ecosystem

    Mitarai, Namiko, Mathiesen, Joachim & Sneppen, Kim, 30 Jul 2012, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 86, 1, p. 011929 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  259. Published

    Granular flow: dry and wet

    Mitarai, Namiko & Nakanishi, H., 2012, In: European Physical Journal. Special Topics. 204, 1, p. 5-17 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  260. Published

    Low frequency sound propagation in lipid memembranes

    Mosgaard, L. D., Heimburg, Thomas Rainer & Jackson, Andrew D., 2012, Advances in Planar Lipid Bilayers and Liposomes. Elsevier, Vol. 16. p. 51-74 24 p. (Advances in Planar Lipid Bilayers and Liposomes).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  261. Published

    Fluid dynamics of dilatant fluid

    Nakanishi, H., Nagahiro, S. & Mitarai, Namiko, 12 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, p. 011401 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  262. Published

    Multiple Roles of Heparin in the Aggregation of p25 alpha

    Nielsen, S. B., Yde, Pernille, Giehm, L., Sundbye, S., Christiansen, G., Mathiesen, Joachim, Jensen, Mogens Høgh, Jensen, P. H. & Otzen, D. E., 2012, In: Journal of Molecular Biology. 421, 4-5, Part 2, p. 601-615

    Research output: Contribution to journal › Journal article › Research › peer-review

  263. Published

    Force probing of individual molecules inside the living cell is now a reality

    Oddershede, L. B., 17 Oct 2012, In: Nature Chemical Biology. 8, 11, p. 879-886 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  264. Published

    Biological systems on a small scale

    Pedersen, L., 2012, Center for Ice & Climate: Faculty of Science, University of Copenhagen. 184 p.

    Research output: Book/Report › Ph.D. thesis › Research

  265. Published

    Two dimensional bias correction of temperature and precipitation copulas in climate models

    Piani, C. & Härter, Jan Olaf Mirko, 16 Oct 2012, In: Geophysical Research Letters. 39, p. L20401

    Research output: Contribution to journal › Journal article › Research › peer-review

  266. Published

    Equilibrium Strategy and Population-Size Effects in Lowest Unique Bid Auctions

    Pigolotti, S., Bernhardsson, P. J. S., Juul, J. S., Galster, G. & Vivo, P., 22 Feb 2012, In: Physical Review Letters. 108, 8, p. 088701 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  267. Published

    Population Genetics in Compressible Flows

    Pigolotti, S., Benzi, R., Jensen, Mogens Høgh & Nelson, D. R., 23 Mar 2012, In: Physical Review Letters. 108, 12, p. 128102 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  268. Published

    Effect of coupling asymmetry on mean-field solutions of the direct and inverse Sherrington-Kirkpatrick model

    Sakellariou, J., Roudi, Y., Mezard, M. & Hertz, John, 2012, In: Philosophical Magazine. 92, 1-3, p. 272-279 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  269. Published

    A simple histone code opens many paths to epigenetics

    Sneppen, Kim & Dodd, I. B., 2012, In: P L o S Computational Biology. 8, 8, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  270. Published

    Multistability with a Metastable Mixed State

    Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  271. Published

    Genome-Wide Screening of Genes Regulated by DNA Methylation in Colon Cancer Development

    Spisak, S., Kalmar, A., Galamb, O., Wichmann, B., Sipos, F., Péterfia, B., Csabai, I., Kovalszky, I., Semsey, S., Tulssay, Z. & Molnár, B., 1 Oct 2012, In: P L o S One. 7, 10, p. e46215

    Research output: Contribution to journal › Journal article › Research › peer-review

  272. Published

    Spreading of multiple epidemics with cross immunization

    Uekermann, F. & Sneppen, Kim, 13 Sep 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 86, 3, Part 2, p. 036108 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  273. Published

    Interweaving categories: Styles, paradigms, and models

    Winther, Rasmus, 1 Dec 2012, In: Studies in History and Philosophy of Science - Part A. 43, 4, p. 628-639

    Research output: Contribution to journal › Journal article › Research › peer-review

  274. Published

    Formation of martian araneiforms by gas-driven erosion of granular material

    de Villiers, S., Nermoen, A., Jamtveit, B., Mathiesen, Joachim, Meakin, P. & Werner, S. C., 2 Jul 2012, In: Geophysical Research Letters. 39, p. L13204 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  275. 2011
  276. Published

    Fragmentation of fullerenes chapter 26 in Handbook of Nanophysics: Clusters and fullerences

    Albert, V. V., Chancey, R. T., Oddershede, L. B., Harris, F. E. & Sabin, J. R., 2011, CPC Press, Taylor & Francis Group ed. USA. (Handbook of Nanophysics).

    Research output: Book/Report › Book › Research › peer-review

  277. Published

    Biomimetic triblock copolymer membranes: from aqueous solutions to solid supports

    Gonzalez-Perez, Alfredo, Castelletto, V., Hamley, I. W. & Taboada, P., 1 Jan 2011, In: Soft Matter. 7, 3, p. 1129-1138

    Research output: Contribution to journal › Journal article › Research › peer-review

  278. Published

    Key players in the genetic switch of bacteriophage TP901-1.

    Alsing, A., Pedersen, M., Sneppen, Kim & Hammer, K., 19 Jan 2011, In: Biophysical Journal. 100, 2, p. 313-321 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  279. Published

    Decreased material-activation of the complement system using low-energy plasma polymerized poly(vinyl pyrrolidone) coatings

    Andersen, T. E., Palarasah, Y., Skjødt, Mikkel-Ole, Ogaki, R., Benter, M., Alei, M., Kolmos, H. J., Koch, C. & Kingshott, P., Jul 2011, In: Biomaterials. 32, 20, p. 4481-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  280. Published

    Optimizing active and passive calibration of optical tweezers

    Andersson, M., Czerwinski, F. & Oddershede, L. B., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044020

    Research output: Contribution to journal › Journal article › Research › peer-review

  281. Published

    Effect of Surface Morphology on the Dissipation During Shear and Slip Along a Rock-Rock Interface that Contains a Visco-elastic Core

    Angheluta, L., Candela, T., Renard, F. & Mathiesen, Joachim, 1 Dec 2011, In: Pure and Applied Geophysics. 168, 12, p. 2335-2344

    Research output: Contribution to journal › Journal article › Research › peer-review

  282. Published

    Zipf's law unzipped

    Baek, S. K., Minnhagen, P. & Bernhardsson, P. J. S., 7 Apr 2011, In: New Journal of Physics. 13, p. 043004

    Research output: Contribution to journal › Journal article › Research › peer-review

  283. Published

    Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes

    Bang-Berthelsen...[et al.], C. H., Pedersen, L., Flovel, T. & Hagedorn, P., 2011, In: B M C Genomics. 12

    Research output: Contribution to journal › Journal article › Research › peer-review

  284. Published

    Expanding the Optical Trapping Range of Lipid Vesicles to the Nanoscale

    Bendix, Poul Martin & Oddershede, L. B., 1 Dec 2011, In: Nano Letters. 11, 12, p. 5431-5437

    Research output: Contribution to journal › Journal article › Research › peer-review

  285. Published

    Expanding the optical trapping range of lipid vesicles to the nano-scale

    Bendix, Poul Martin & Oddershede, L. B., 2011, In: Nano Letters. 11, 12, p. 5431–5437 7 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  286. Published

    Direct and indirect effects in the regulation of overlapping promoters

    Bendtsen, K. M., Erdossy, J., Csiszovski, Z., Svenningsen, Sine Lo, Sneppen, Kim, Krishna, S. & Semsey, S., 2011, In: Nucleic Acids Research. 39, 16, p. 6879-6885 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  287. Published

    Self-consistent method for density estimation

    Bernacchia, A. & Pigolotti, S., 1 Jan 2011, In: Journal of The Royal Statistical Society Series B-statistical Methodology. 73, Part 3, p. 407-422

    Research output: Contribution to journal › Journal article › Research › peer-review

  288. Published

    Structural correlations in bacterial metabolic networks

    Bernhardsson, P. J. S., Gerlee, P. D. M. & Lizana, G. L., 20 Jan 2011, In: B M C Evolutionary Biology. 11, p. 20

    Research output: Contribution to journal › Journal article › Research › peer-review

  289. Published

    Electrical aspects of lipid membranes

    Blicher, A., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen Denmark. 145 p.

    Research output: Book/Report › Ph.D. thesis › Research

  290. Published

    Emergence and decline of scientific paradigms

    Bornholdt, S., Jensen, Mogens Høgh & Sneppen, Kim, 2 Feb 2011, In: Physical Review Letters. 106, 5, p. 058701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  291. Published

    On the contribution of statistical bias correction to the uncertainty in the projected hydrological cycle

    Chen, C., Härter, Jan Olaf Mirko, Hagemann, S. & Piani, C., 26 Oct 2011, In: Geophysical Research Letters. 38, p. L20403

    Research output: Contribution to journal › Journal article › Research › peer-review

  292. Published

    Ecological oscillations induced by a shared predator and the "Winner peaks first" rule

    Cordsen, P., Pigolotti, S. & Jensen, Mogens Høgh, 16 Sep 2011, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 84, 3, p. 031915

    Research output: Contribution to journal › Journal article › Research › peer-review

  293. Published

    Structure and Function of the D-Galactose Network in Enterobacteria

    Csiszovszki, Z., Krishna, S., Orosz, L., Adhya, S. & Semsey, S., 28 Jun 2011, In: mBio. 2, 4, p. e00053-11

    Research output: Contribution to journal › Journal article › Research › peer-review

  294. Published

    TimesSeriesStreaming.VI: LabVIEW program for reliable data streaming of large analog time series

    Czerwinski, F. & Oddershede, L. B., 1 Feb 2011, In: Computer Physics Communications. 182, 2, p. 485-489 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  295. Published

    Barriers and Silencers: A Theoretical Toolkit for Control and Containment of Nucleosome-Based Epigenetic States

    Dodd, I. B. & Sneppen, Kim, 9 Dec 2011, In: Journal of Molecular Biology. 414, 4, p. 624-637

    Research output: Contribution to journal › Journal article › Research › peer-review

  296. Published

    A bound particle coupled to two thermostats

    Fogedby, H. C. & Imparato, A., 1 May 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, p. P05015

    Research output: Contribution to journal › Journal article › Research › peer-review

  297. Published

    Quantifying how DNA stretches, melts and changes twist under tension

    Gross, P., Laurens, N., Oddershede, L. B., Bockelmann, U., Peterman, E. J. G. & Wuite, G. J. L., 1 Sep 2011, In: Nature Physics. 7, 9, p. 731-736

    Research output: Contribution to journal › Journal article › Research › peer-review

  298. Published

    Computational fluid dynamics simulations of flow and concentration polarization in forward osmosis membrane systems

    Gruber, M. F., Johnson, C. J., Tang, C. Y., Jensen, Mogens Høgh, Yde, L. & Helix-Nielsen, C., 1 Sep 2011, In: Journal of Membrane Science. 379, 1-2, p. 488-495

    Research output: Contribution to journal › Journal article › Research › peer-review

  299. Published

    Self-assembling drugs: A new therapeutic strategy

    Hassan, N., Ruso, J. M. & Gonzalez-Perez, Alfredo, 3 May 2011, In: Soft Matter. 7, 11, p. 5194-5199 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  300. Published

    Targeted bacterial immunity buffres phage diversity

    Härter, Jan Olaf Mirko, Trusina, Ala & Sneppen, Kim, 21 Aug 2011, In: Journal of Virology. 85, 20, p. 10554-10560 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  301. Published

    In Vivo Anomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules

    Jeon, J., Tejedor, V., Barkai, E., Selhuber-Unkel, C. J. M., Oddershede, L. B., Berg-Sørensen, K. & Metzler, R., 25 Jan 2011, In: Physical Review Letters. 106, 4, p. 048103 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  302. Published

    AC Losses in Bi(2)Sr(2)Ca(2)Cu(3)O(10+x) Tapes and a 3.15-m-Long Single-Phase Cable

    Juul, J. S., Molgaard, E. T., Jensen, Jens, Andersen, N. H., Abrahamsen, A. B. & Traeholt...[et al.], C., 1 Dec 2011, In: IEEE Transactions on Applied Superconductivity. 21, 6, p. 3599-3603

    Research output: Contribution to journal › Journal article › Research › peer-review

  303. Published

    Locally self-organized quasicritical percolation in a multiple-disease model

    Juul, J. S. & Sneppen, Kim, 30 Sep 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 3, p. 0036119 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  304. Published

    Heat Profiling of 3D Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., M. Bendix, P., Stamou, Dimitrios & Oddershede, L. B., 9 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  305. Published

    Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release

    Kyrsting, A., Bendix, Poul Martin, Stamou, Dimitrios & Oddershede, L. B., 11 Feb 2011, In: Nano Letters. 11, 2, p. 888-892 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  306. Published

    The stability of solitons in biomembranes and nerves

    Lautrup, B. E., Appali, R., Jackson, Andrew D. & Heimburg, Thomas Rainer, 9 Jun 2011, In: The European Physical Journal E: Soft Matter and Biological Physics. 34, 57, p. 11057 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  307. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  308. Published

    Dissimilar bouncy walkers

    Lomholt, M. A. & Lizana, G. L., 28 Jan 2011, In: Journal of Chemical Physics. 134, 8, p. 045101

    Research output: Contribution to journal › Journal article › Research › peer-review

  309. Published

    Publisher's note: “Dissimilar bouncy walkers” [J. Chem. Phys. 134, 045101 (2011)]

    Lomholt, M. A., Lizana, G. L. & Ambjørnsson, T., 28 Feb 2011, In: Journal of Chemical Physics. 134, 8, p. 088902 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  310. Published

    Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity

    Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101

    Research output: Contribution to journal › Journal article › Research › peer-review

  311. Published

    Modeling Interaction Patterns at the Levels of Proteins, Cells and Humans

    Mengel, A. B., 1 Jun 2011, Niels Bohr Institute ed. University of Copenhagen, Denmark. 75 p.

    Research output: Book/Report › Ph.D. thesis › Research

  312. Published

    Shear Thickening Oscillation in a Dilatant Fluid

    Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801

    Research output: Contribution to journal › Journal article › Research › peer-review

  313. Published

    Small-scale nonequilibrium systems

    Oddershede, L. B. & Møller, P. C. F., 2011, Handbook of Nanophysics: Principles and methods. CPC Press ed. Taylor & Francis, Vol. chapter 7. p. 7-1- 7-16

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  314. Published

    High-speed video-based tracking of optically trapped colloids

    Otto, O., Gornall, J. L., Stober, G., Czerwinski, F., Siedel, R. & Keyser, U. F., 1 Apr 2011, In: Journal of Optics. 13, 4,SI, p. 044011

    Research output: Contribution to journal › Journal article › Research › peer-review

  315. Published

    Dickkopf1 - a new player in modelling the wnt pathway

    Pedersen, L., Krishna, S. & Jensen, Mogens Høgh, 12 Oct 2011, In: P L o S Computational Biology. 6, 10, p. e25550

    Research output: Contribution to journal › Journal article › Research › peer-review

  316. Published

    The functional half-life of an mRNA depends on the ribosome spacing in an early coding region

    Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  317. Published

    How Gaussian competition leads to lumpy or uniform species distributions

    Pigolotti, S., Lopez, C., Hermandez-Garcia, E. & Andersen, K. H., 1 May 2011, In: Theoretical Ecology. 3, 2, p. 89-96 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  318. Published

    Symbolic dynamics in genetic oscillation patterns: Chapter in " The Complexity of dynamical systems: a multidisciplinary perspective" p.99-118, eds. Johan Dubbeldam, Kirk Green, Daan Lanstra

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2011, The Complexity of Dynamical systems: a multidisciplinary perspective. Wiley Publishing ed. USA: Wiley-VCH, p. 99-118 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  319. Published

    Use of small angle neutron scattering to study the interaction of angiotensin II with model membranes

    Preu, J., Jaeger, T., Garamus, V. M. & Gutberlet, T., 1 May 2011, In: European Biophysics Journal. 40, 5, p. 687-698

    Research output: Contribution to journal › Journal article › Research › peer-review

  320. Published

    Vesicle Fusion Observed by Content Transfer across a Tethered Lipid Bilayer

    Rawle, B., Lengerich, B., Cheung, M., Bendix, Poul Martin & Boxer, S., 19 Oct 2011, In: Biophysical Journal. 101, 8, p. L37-L39 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  321. Published

    Arachidonic Acid Randomizes Endothelial Cell Motion and Regulates Adhesion and Migration

    Rossen, Ninna Struck, Hansen, A., Oddershede, L. B. & Selhuber-Unkel, C. J. M., 23 Sep 2011, In: PLoS ONE. 6, 9, p. e25196

    Research output: Contribution to journal › Journal article › Research › peer-review

  322. Published

    Dynamical TAP equations for non-equilibrium Ising spin glasses

    Roudi, Y. & Hertz, John, 31 Mar 2011, In: Journal of Statistical Mechanics: Theory and Experiment. 2011, 3, p. P03031 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  323. Published

    Mean Field Theory for Nonequilibrium Network Reconstruction

    Roudi, Y. & Hertz, John, 28 Jan 2011, In: Physical Review Letters. 106, 4, p. 048701 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  324. Published

    The Value of Example Solutions in Pharmacy Education: The role of seniority and gender.

    Sandelin, Albin Gustav, Hansen, H. R., Baldursdóttir, S. G., Kristensen, Anders Skov, Bak, Lasse Kristoffer, Christiansen, Frederik Voetmann & Selhuber-Unkel, C. J. M., 2011, In: Pharmacy Education. 11, 1, p. 32-37 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  325. Published

    Conformation Regulation of the X Chromosome Inactivation Center: a model

    Scialdone, A., Cataudella, I., Barbieri, M. & Nicodemi, M., 1 Oct 2011, In: P L o S Computational Biology. 7, 10, p. e1002229

    Research output: Contribution to journal › Journal article › Research › peer-review

  326. Published

    Significant improvement of optical traps by tuning standard water immersion objectives

    Seyyed Reihani, S. N., Richardson, A. C. & Oddershede, L. B., 1 Oct 2011, In: Journal of Optics. 13, 10, p. 105301

    Research output: Contribution to journal › Journal article › Research › peer-review

  327. Published

    Static and Dynamic Disorder Observed in the Phase Transition Behavior of Individual Small Unilamellar Vesicles

    Stamou, Dimitrios, Bendix, Poul Martin, Wibroe, P. P. & Hatzakis, Nikos, 2011, In: Biophysical Journal. 100, 3 suppl 1, p. 35a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  328. Published

    Periodic solutions and refractory periods in the soliton theory for nerves and the locust femoral nerve

    Vargas, V., Ludu, A., Hustert, R., Gumrich, P., Jackson, Andrew D. & Heimburg, Thomas Rainer, 1 Jan 2011, In: Biophysical Chemistry. 153, 2-3, p. 159-167 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  329. Published

    Analyzing inflammatory response as excitable media

    Yde, Pernille, Jensen, Mogens Høgh & Trusina, Ala, 18 Nov 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 5, Part 1, p. 051913

    Research output: Contribution to journal › Journal article › Research › peer-review

  330. Published

    Modeling the NF-kappa B mediated inflammatory response predicts cytokine waves in tissue

    Yde, Pernille, Mengel, A. B., Jensen, Mogens Høgh, Krishna, S. & Trusina, Ala, 19 Jul 2011, In: BMC Systems Biology. 5, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  331. 2010
  332. Published

    Functionality and noise in gene regulation qualitative answers from quantitative models & stochastic aspects of gene regulation

    Andersson, A. M. C., 1 Apr 2010, Niels Bohr Institute ed. University of Copenhagen: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research

  333. Published

    Thermodynamics of stressed solids: Slow deformation and roughening of material interfaces

    Angheluta, L. & Mathiesen, Joachim, 1 Jan 2010, In: European Physical Journal. Special Topics. 178, 1, p. 123-132 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  334. Published

    Morphological instabilities of stressed and reactive geological interfaces

    Angheluta, L., Mathiesen, Joachim, Misbah, C. & Renard, F., 24 Jun 2010, In: Journal of Geophysical Research: Biogeosciences. 115, p. B06406 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  335. Published

    Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise

    Avlund, M., Krishna, S., Semsey, S., Dodd, I. B. & Sneppen, Kim, 20 Dec 2010, In: PLoS ONE. 5, 12, p. 0015037 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  336. Published

    Observation of periodic orbits on curved two-dimensional geometries

    Avlund, M., Ellegaard, Clive Sigurd, Oxborrow, M. & Søndergaard, N., 23 Apr 2010, In: Physical Review Letters. 104, 16, p. 164101 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  337. Published

    An investigation on methods for free-field comparison calibration of measurement microphones

    Barrera Figueroa, S., Moreno Pescador, Guillermo Sergio, Jacobsen, F., Rasmussen, K., Cutanda Henriquez, V. & Juhl, P. M., 2010, Proceedings of Internoise 2010: 39th International Congress and Exposition on Noise Control Engineering - Lisbon, Portugal Duration:,15 Jun 2010 → 16 Jun 2010. Portugal, Lisbon, Vol. 39. p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  338. Published

    Direct measurements of heating by electromagnetically trapped gold nanoparticles on supported lipid bilayers

    Bendix, Poul Martin, Seyyed Reihani, S. N. & Oddershede, L. B., 6 Apr 2010, In: ACS Nano. 4, 4, p. 2256-2262 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  339. Published

    On two-dimensionalization of three-dimensional turbulence in shell models

    Chakraborty, S., Jensen, Mogens Høgh & Sarkar, A., 15 Jan 2010, In: European Physical Journal B. Condensed Matter and Complex Systems. 73, 3, p. 447-453 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  340. Published

    Three-dimensional turbulent relative dispersion by the Gledzer-Ohkitani-Yamada shell model

    Chakraborty, S., Jensen, Mogens Høgh & Madsen, B. S., 13 Jan 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 1, p. 017301 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  341. Published

    Stop-and-go kinetics in amyloid fibrillation

    Ferkinghoff-Borg, J., Fonslet, J., Andersen, C. B., Krishna, S., Pigolotti, S., Hisashi, Y., Yuji, G., Otzen, D. & Jensen, Mogens Høgh, 1 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 010901(R) 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  342. Published

    Active-passive calibration of optical tweezers in viscoelastic media.

    Fischer, M., Richardson, A. C., Seyyed Reihani, S. N., Oddershede, L. B. & Berg-Sørensen, K., 14 Jan 2010, In: Review of Scientific Instruments. 81, 1, p. 015103 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  343. Published

    Ion-channel-like behavior in lipid bilayer membranes at the melting transition

    Gallaher, J., Wodzinska, K., Heimburg, Thomas Rainer & Bier, M., 30 Jun 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 6, Part 1, p. 061925 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  344. Published

    Diffusion-limited tumour growth: simulations and analysis

    Gerlee, P. D. M. & Anderson, A. R. A., 1 Apr 2010, In: Mathematical Biosciences and Engineering. 7, 2, p. 385-400 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  345. Published

    PRODUCTIVITY AND DIVERSITY IN A CROSS-FEEDING POPULATION OF ARTIFICIAL ORGANISMS

    Gerlee, P. D. M. & Lundh, T., 20 Apr 2010, In: Evolution. 64, 9, p. 2716-2730 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  346. Published

    Structural correlations in bacterial metabolic networks

    Gerlee, P. D. M., Bernhardsson, P. J. S., Lizana, G. L. & Sneppen, Kim, 1 Jun 2010, In: FEBS Journal. 277, Suppl. 1, p. 114-114 1 p.

    Research output: Contribution to journal › Journal article › Research

  347. Published

    Influence of Lipid Heterogeneity and Phase Behavior on Phospholipase A(2) Action at the Single Molecule Level

    Gudmand, M. J., Rocha, S., Hatzakis, Nikos, Peneva, K., Müllen , K., Stamou, Dimitrios, Uji-I, H., Hofkens , J., Bjørnholm, T. & Heimburg, Thomas Rainer, 5 May 2010, In: Biophysical Journal. 98, 9, p. 1873-82 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  348. Published

    Finding diabetic nephropathy biomarkers in the plasma peptidome by high-throughput magnetic bead processing and MALDI-TOF-MS analysis

    Hansen, H. G., Overgaard, J., Lajer, M., Hubalek, F., Højrup, P., Pedersen, L., Tarnow, L., Rossing, Peter, Pociot, Flemming & McGuire, J. N., 1 Sep 2010, In: Proteomics - Clinical Applications. 4, 8-9, p. 697-705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  349. Published

    Sustainability of Virulence in a Phage-Bacterial Ecosystem

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 1 Mar 2010, In: Journal of Virology. 84, 6, p. 3016-3022 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  350. Published

    Contribution about sound pulses in nerves and anesthesia

    Heimburg, Thomas Rainer, 1 May 2010, København

    Research output: Other contribution › Research

  351. Published

    Electromechanical theory of nerve pulses and channel formation

    Heimburg, Thomas Rainer, 5 Feb 2010, Dept. of Chemical Engineering, Spain

    Research output: Other contribution › Research

  352. Published

    Lipid ion channels

    Heimburg, Thomas Rainer, 1 Aug 2010, In: Biophysical Chemistry. 150, 1-3, p. 2-22 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  353. Published

    Physics of nerves: the action potential as a propagating density pulse

    Heimburg, Thomas Rainer, 2010, Lyngby, Danmark

    Research output: Other contribution › Research

  354. Published

    The physics of nerves and lipid ion channels

    Heimburg, Thomas Rainer, 2010, Cavendish Laboratory, UK

    Research output: Other contribution › Research

  355. Published

    Cross-correlations in high-conductance states of a model cortical network

    Hertz, John, 1 Feb 2010, In: Neural Computation. 22, 2, p. 427-447 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  356. Published

    Timing of gene transcription in the galactose utilization system of Escherichia coli

    Horvath, P., Hunziker, A., Erdossy, J., Krishna, S. & Semsey, S., 3 Dec 2010, In: Journal of Biological Chemistry. 285, 49, p. 38062-38068 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  357. Published

    Genetic flexibility of regulatory networks

    Hunziker, A., Tuboly, C., Horváth, P., Krishna, S. & Semsey, S., 20 Jul 2010, In: Proceedings of the National Academy of Science of the United States of America. 107, 29, p. 12998-13003 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  358. Published

    Stress-specific response of the p53-Mdm2 feedback loop

    Hunziker, A. M., Jensen, Mogens Høgh & Krishna, S., 12 Jul 2010, In: BMC Systems Biology. 4, 94, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  359. Published

    Pair dispersion in shell model fields

    Jensen, Mogens Høgh & Chakraborty, S., 1 Apr 2010, In: Information Technology Interfaces. 2010

    Research output: Contribution to journal › Conference article › Research › peer-review

  360. Published

    A Wnt oscillator model for somitogenesis

    Jensen, P. B., Pedersen, L., Krishna, S. & Jensen, Mogens Høgh, 17 Mar 2010, In: Biophysical Journal. 98, 6, p. 943-950 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  361. Published

    Competition on the rocks: community growth and tessellation

    Jettestuen, E., Nermoen, A., Hestmark, G., Timdal, E. & Mathiesen, Joachim, 30 Sep 2010, In: P L o S One. 5, 9, p. e12820

    Research output: Contribution to journal › Journal article › Research › peer-review

  362. Published

    Genetic demixing and evolution in linear stepping stone models

    Korolev, K. S., Avlund, M., Hallatschek, O. & Nelson, D. R., 21 May 2010, In: Reviews of Modern Physics. 82, 2, p. 1691-1718 27 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  363. Published

    Data collapse of the spectra of water-based stable single-bubble sonoluminescence

    Levinsen, Mogens, 5 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 3, p. 036323 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  364. Published

    Role of HU in regulation of gal promoters: chapter 17 in Bacterial chromatin p.395-417, eds: C. Dorman and R.Dame

    Lewis...[et al.], D. E. A., Lee, S. J. & Semsey, S., 1 Dec 2010, Tyskland: Springer Science+Business Media. 22 p.

    Research output: Book/Report › Book › Research › peer-review

  365. Published

    Foundation of fractional Langevin equation: Harmonization of a many-body problem

    Lizana, G. L., Ambjørnsson, T., Taloni, A., Barkai, E. & Lomholt, M. A., 14 May 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 81, 5, p. 051118 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  366. Published

    Time walkers and spatial dynamics of ageing information

    Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  367. Published

    Organizational structure and communication networks in a university environment

    Mathiesen, Joachim, Jamtveit, B. & Sneppen, Kim, 2 Jul 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 1, p. 016104 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  368. Published

    Modeling oscillatory control in NF-¿B, p53 and Wnt signaling

    Mengel, B., Hunziker, A., Pedersen, L., Trusina, Ala, Jensen, Mogens Høgh & Krishna, S., 1 Dec 2010, In: Current Opinion in Genetics & Development. 20, 6, p. 656-64 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  369. Published

    Theory for the stability and regulation of epigenetic landscapes

    Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  370. Published

    Interference of mesoscales in the critical behaviour of polystyrene-cyclohexane: heat capacity and mass density

    Mirzaev, S. Z., Heimburg, Thomas Rainer & Kaatze, U., 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, p. 061502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  371. Published

    Critical behavior of polystyrene-cyclohexane

    Mirzaev, S., Kaatze, U. & Heimburg, Thomas Rainer, 7 Dec 2010, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 82, 6, part 1, p. 061502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  372. Published

    Simple Interaction Model for Particlly Wet Granular Materials

    Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220

    Research output: Contribution to journal › Conference article › Research › peer-review

  373. Published

    Complex and non-equlibrium physics: at Nordic workshop on statistical physics , biology

    Oddershede, L. B., 18 Mar 2010, Stockholm, Sverige

    Research output: Other contribution › Research

  374. Published

    Genome maintanace and consequences

    Oddershede, L. B., 5 Jun 2010, Dragør, DK.

    Research output: Other contribution › Research

  375. Published

    Institute Colloquium

    Oddershede, L. B., 16 Feb 2010, USA

    Research output: Other contribution › Research

  376. Published

    Institute Colloquium

    Oddershede, L. B., 15 Jun 2010, Dep. of Chemistry

    Research output: Other contribution › Research

  377. Published

    Institute Colloquium

    Oddershede, L. B., 15 Jan 2010, England

    Research output: Other contribution › Research

  378. Published

    N7 nanooptics

    Oddershede, L. B., 5 Sep 2010, Fuglesøcentert, Ebeltoft, DK.

    Research output: Other contribution › Research

  379. Published

    Photon 10

    Oddershede, L. B., 25 Aug 2010, Southampton University, GB. : American Institute of Physics.

    Research output: Other contribution › Research

  380. Published

    Squishy physics

    Oddershede, L. B., 18 Feb 2010, USA

    Research output: Other contribution › Research

  381. Published

    Real-time particle tracking at 10,000 fps using optical fiber illumination

    Otto, O., Czerwinski, F., Gornall, J. L., Stober, G., Oddershede, L. B., Seidel, R. & Keyser, U. F., 12 Oct 2010, In: Optics Express. 18, 22, p. 22722-22733 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  382. Published

    Plasma proteome analysis of patients with type 1 diabetes with diabetic nephropathy

    Overgaard, A. J., Hansen, H. G., Lajer, M., Pedersen, L., Tarnow, L., Rossing, Peter, McGuire, J. N. & Pociot, Flemming, 2010, In: Proteome Science. 8, p. 4 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  383. Published

    Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems

    Palarasah, Y., Skjødt, Mikkel-Ole, Vitved, L., Andersen, T. E., Skjoedt, K. & Koch, C., Mar 2010, In: Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  384. Published

    Quantum dots as handles for optical manipulation

    Jauffred, Liselotte, Sletmoen, M., Czerwinski, F. & Oddershede, L. B., 27 Aug 2010, In: Proceedings of SPIE, the International Society for Optical Engineering. 7762

    Research output: Contribution to journal › Conference article › Research › peer-review

  385. Published

    Two-photon quantum dot excitation during optical trapping

    Jauffred, Liselotte & Oddershede, L. B., 19 Apr 2010, In: Nano Letters. 10, 5, p. 1927-1930 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  386. Published

    Characterization of the CI repressor protein encoded by the temperate lactococcal phage TP901-1

    Pedersen, M., Ligowska, M. & Hammer, K., 15 Apr 2010, In: Journal of Bacteriology. 192, 8, p. 2102-2110 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  387. Published

    Coexistence and invasibility in a two-species competition model with habitat-preference

    Pigolotti, S. & Cencini, M., 21 Aug 2010, In: Journal of Theoretical Biology. 265, 4, p. 609-617 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  388. Published

    Entropy production and coarse graining in Markov processes

    Puglisi, A., Rondoni, L., Vulpiani, A. & Pigolotti, S., 20 May 2010, In: Journal of Statistical Mechanics: Theory and Experiment. 2010, p. P05015 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  389. Published

    Self-assembly based on hydrotropic counterion - Single-chain amphiphile ion pairs

    Rosholm, K. R., Gonzalez-Perez, Alfredo & Mouritsen, Ole G., 1 Oct 2010, In: Colloid and Polymer Science. 288, 14-15, p. 1351-1357 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  390. Published

    A minimal model for multiple epidemics and immunity spreading

    Sneppen, Kim, Trusina, Ala, Jensen, Mogens Høgh & Bornholdt, S., 18 Oct 2010, In: PLoS ONE. 5, 10, p. e13326

    Research output: Contribution to journal › Journal article › Research › peer-review

  391. Published

    Economy of operon formation: cotranscription minimizes shortfall in protein complexes

    Sneppen, Kim, Pedersen, Steen, Krishna, S., Dodd, I. B. & Semsey, S., 21 Sep 2010, In: Microbe. 1, 4, p. e00177-10

    Research output: Contribution to journal › Journal article › Research › peer-review

  392. Published

    Simplified models of biological networks

    Sneppen, Kim, Krishna, S. & Semsey, S., 4 Jan 2010, In: Annual Review of Biophysics and Biomolecular Structure. 9, 39, p. 43-59 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  393. Published

    Quantitative analysis of single particle trajectories: mean maximal excursion method

    Tejedor...[et al.], V., Benichou, O., Voituriez, R. & Oddershede, L. B., 7 Apr 2010, In: Biophysical Journal. 98, 7, p. 1364-1372 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  394. Published

    The unfolded protein response and translation attenuation: a modelling approach.

    Trusina, Ala & Tang, C., Oct 2010, In: Diabetes, Obesity and Metabolism Online. 12, p. 27-31

    Research output: Contribution to journal › Journal article › Research › peer-review

  395. 2009
  396. Published

    Fragmentation of fullerences, chapter in Hanbook of Nanophysics

    Albert, V. V., Chancey, R. T., Oddershede, L. B., Harris, F. E. & Sabin, J. R., 2009, Handbook of Nanophysics. Taylor & Francis

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  397. Published

    Towards a thermodynamic theory of nerve pulse propagation

    Andersen, S. S., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2009, In: Progress in Neurobiology. 88, 2, p. 104-113 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  398. Published

    Microenvironment driven invasion: a multiscale multimodel investigation

    Anderson, A. R. A., Rejniak, K. A., Gerlee, P. D. M. & Quaranta, V., 2009, In: Journal of Mathematical Biology. 58, 4-5, p. 579-624 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  399. Published

    Thermodynamics and roughening of solid-solid interfaces

    Angheluta, L., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 3, Part 1, p. 031601

    Research output: Contribution to journal › Journal article › Research › peer-review

  400. Published

    Dynamics of growth: decisions in phages & gene segregation in bacteria

    Avlund, M., 2009, Niels Bohr Institute: Museum Tusculanum. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  401. Published

    Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda

    Avlund, M., Dodd, I. B., Sneppen, Kim & Krishna, S., 11 Dec 2009, In: Journal of Molecular Biology. 394, 4, p. 681-693

    Research output: Contribution to journal › Journal article › Research › peer-review

  402. Published

    Why do phage play dice?

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  403. Published

    Quantification of nano-scale intermembrane contact areas using fluorescence resonance energy transfer

    Bendix, Poul Martin, Pedersen, M. S. & Stamou, Dimitrios, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 30, p. 12341-12346 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  404. Published

    The temperature dependence of lipid membrane permeability, its quantized nature, and the influence of anesthetics

    Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4581-4591 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  405. Published

    Drying patterns: sensitivity to residual stresses

    Cohen, Y., Procaccia, I. & Mathiesen, Joachim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 4, Part 2, p. 046109

    Research output: Contribution to journal › Journal article › Research › peer-review

  406. Published

    Nanotoxikologie-es gibt immer zwei Seiten "review about nanotoxicology as an emerging field of research, indcludes interviews with Willie Peijnenburg, Priska Hinz, and Jens Otte

    Czerwinski, F., 2009, In: Junge Wissenschaft. 83

    Research output: Contribution to journal › Journal article › Research › peer-review

  407. Published

    Quantifying and pinpointing sources of noise in optical tweezers experiments

    Czerwinski, F., Richardson, A. C., Selhuber-Unkel, C. & Oddershede, L. B., 2009, Proceedings of SPIE, vol.7400, San Diego: Optical Trapping and Optical Micromanipulation VI. SPIE - International Society for Optical Engineering, Vol. 7400. p. 740004-740009 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  408. Published

    Quantifying noise in optical tweezers by Allan Variance

    Czerwinski, F., Richardson, A. C. & Oddershede, L. B., 2009, In: Optics Express. 17, 15, p. 13255-13269 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  409. Published

    Vesicles in electric fields: some novel aspects of membrane behavior

    Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  410. Published

    Oral manifestations among people living with HIV/AIDS in Tanzania

    Fabian, F. M., Kahabuka, F. K., Petersen, P. E., Shubi, F. M. & Jürgensen, N., 2009, In: International Dental Journal. 59, 4, p. 187-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  411. Published

    Direct visualization of the lateral structure of porcine brain cerebrosides/POPC mixtures in presence and absence of cholesterol

    Fidorra, M., Heimburg, Thomas Rainer & Bagatolli, L. A., 2009, In: Biophysical Journal. 97, 1, p. 142-154 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  412. Published

    Melting of individual lipid components in binary lipid mixtures studied by FTIR spectroscopy. DSC and Monte Carlo simulations

    Fidorra, M., Heimburg, Thomas Rainer & Seeger, H. M., 2009, In: Biochimica et Biophysica Acta - Biomembranes. 1788, 3, p. 600-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  413. Published

    Heat distribution function for motion in a general potential at low temperature

    Fogedby, H. C. & Imparato, A., 2009, In: Journal of Physics A: Mathematical and Theoretical (Print Edition). 42, 47, p. 475004

    Research output: Contribution to journal › Journal article › Research › peer-review

  414. Published

    Minimum action method for the Kardar-Parisi-Zhang equation

    Fogedby, H. C. & Ren, W., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 4, Part 1, p. 041116

    Research output: Contribution to journal › Journal article › Research › peer-review

  415. Published

    Evolution of cell motility in an individual-based model of tumour growth

    Gerlee, P. D. M. & Anderson, A. R. A., 2009, In: Journal of Theoretical Biology. 259, 1, p. 67-83 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  416. Published

    Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms

    Gerlee, P. D. M., Lundh, T., Zhang, B. & Anderson, A. R. A., 2009, In: Journal of the Royal Society Interface. 6, 41, p. 1233-1245 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  417. Published

    Modelling evolutionary cell behaviour using neural networks: application to tumour growth

    Gerlee, P. D. M. & Anderson, A. R. A., 2009, In: BioSystems. 95, 2, p. 166-174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  418. Published

    Pathway identification by network pruning in the metabolic network of Escherichia coli

    Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  419. Published

    Biomimetic triblock copolymer membrane arrays: A stable template for functional membrane proteins

    Gonzalez-Perez, Alfredo, Stibius, K. B., Vissing, T., Nielsen, Claus Henrik & Mouritsen, Ole G., 15 Sep 2009, In: Langmuir. 25, 18, p. 10447-10450 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  420. Published

    Diffusion and Partitioning of Fluorescent Lipid Probes in Phospholipid Monolayers

    Gudmand, M., Fidorra, M., Bjørnholm, T. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4598-4609 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  421. Published

    Die physik von nerven

    Heimburg, Thomas Rainer, 2009, In: Physik Journal (Print). 8, p. 33-39 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  422. Published

    Physical properties of biological membranes. Chapter for "Encyclopedia of Applied Biophysics"

    Heimburg, Thomas Rainer, 2009, Wiley. 593 p.

    Research output: Book/Report › Book › Research

  423. Published

    Themed issue: membrane biophysics

    Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3145-3147 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  424. Published

    Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability

    Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  425. Published

    A spatial model of tumor-host interaction: application of chemotherapy

    Hinow, P., Gerlee, P. D. M., McCawley, L. J. & Quaranta, V., 2009, In: Mathematical Biosciences and Engineering. 6, 3, p. 521-546 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  426. Published

    A versatile approach to beta-amyloid fibril-binding compounds exploiting the Shirakawa/Hayashi protocol for trans-alkene synthesis

    Huynh, Tri Hien Viet, Mantel, M. L. H., Mikkelsen, K., Lindhardt, A. T., Nielsen, N. C., Otzen, D. & Skrydstrup, T., 19 Feb 2009, In: Organic Letters. 11, 4, p. 999-1002 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  427. Published

    Scaling properties of European research units

    Jamtveit, B., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 32, p. 13160-13163 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  428. Published

    Repressor lattice: feedback, commensurability, and dynamical frustration

    Jensen, Mogens Høgh, Krishna, S. & Pigolotti, S., 2009, In: Physical Review Letters. 103, 11, p. 118101

    Research output: Contribution to journal › Journal article › Research › peer-review

  429. Published

    The influence of vesicle size and composition on alpha-synuclein structure and stability

    Kjær, L., Giehm, L., Otzen, D. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 7, p. 2857-2870 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  430. Published

    An active biopolymer network controlled by molecular motors

    Koenderink, G. H., Dogic, Z., Nakamura, F. & Bendix, Poul Martin, 8 Sep 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 36, p. 15192-15197 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  431. Published

    Loewner driving functions for off-critical percolation clusters

    Kondo, Y., Mitarai, Namiko & Nakanishi, H., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 050102

    Research output: Contribution to journal › Journal article › Research › peer-review

  432. Published

    Frustrated bistability as a means to engineer oscillations in biological systems

    Krishna, S., Semsey, S. & Jensen, Mogens Høgh, 2009, In: Physical Biology. 6, 3, p. 036009

    Research output: Contribution to journal › Journal article › Research › peer-review

  433. Published

    Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli

    Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678

    Research output: Contribution to journal › Journal article › Research › peer-review

  434. Published

    Comment on "Citation Statistics" by joint committee on quantitative assessment of research

    Lehmann, S., Lautrup, B. E. & Jackson, Andrew D., 2009, In: Statistical Science. 24, 1, p. 17-20 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  435. Published

    Diffusion of finite-sized hard-core ineracting particles in a one-dimensional box: tagged particle dynamics

    Lizana, G. L. & Ambjörnsson, T., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, p. 051103 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  436. Published

    Defining Network Topologies that Can Achieve Biochemical Adaptation

    Ma, W., Trusina, Ala, El-Samad, H., Lim, W. A. & Tang, C., 21 Aug 2009, In: Cell. 138, 4, p. 760-773

    Research output: Contribution to journal › Journal article › Research › peer-review

  437. Published

    Gliomas induce and exploit microglial MT1-MMP expression for tumor expansion

    Markovic, D. S., Vinnakota, K., Chirasani, S., Synowitz, M., Raguet, H., Stock, K., Sliwa, M., Lehmann, S., Kälin, R., van Rooijen, N., Holmbeck, Kenn, Heppner, F. L., Kiwit, J., Matyash, V., Lehnardt, S., Kaminska, B., Glass, R. & Kettenmann, H., 28 Jul 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 30, p. 12530-5 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  438. Published

    Toolbox model of evolution of prokaryotic metabolic networks and their regulation

    Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  439. Published

    Dynamic features of gene expression control by small regulatory RNAs

    Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  440. Published

    Simple model for wet granular materials with liquid cluster

    Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001

    Research output: Contribution to journal › Journal article › Research › peer-review

  441. Published

    Quantification of droplet deformation by electromagnetic trapping

    Møller, P. C. F. & Oddershede, L. B., 2009, In: EPL. 88, p. 48005 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  442. Published

    Optical tweezers techniques, chapter in Hanndbook of Molecular Biophysics: Methods and Applications

    Oddershede, L. B., 2009, Handbook of Molecular Biophysics. G. Bohr, H. (ed.). Wiley-VCH, p. 195-214 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  443. Published

    Speciation-rate dependence in species-area relationships

    Pigolotti, S. & Cencini, M., 7 Sep 2009, In: Journal of Theoretical Biology. 260, 1, p. 83-89 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  444. Published

    Symbolic dynamics of biological feedback networks

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2009, In: Physical Review Letters. 102, 8, p. 088701

    Research output: Contribution to journal › Journal article › Research › peer-review

  445. Published

    Confocal microscopy of thick specimens

    Reihani, S. N. S. & Oddershede, L. B., 2009, In: Journal of Biomedical Optics. 14, 3, p. 030513-030513-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  446. Published

    Reinforced communication and social navigation generate groups in model networks

    Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111

    Research output: Contribution to journal › Journal article › Research › peer-review

  447. Published

    Ising model for neural data: Model quality and approximate methods for extracting functional connectivity

    Roudi, Y., Tyrcha, J. & Hertz, John, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 5, p. 051915 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  448. Published

    Statistical physics of pairwise probability models

    Roudi, Y., Aurell, E. & Hertz, John, 2009, In: Frontiers in Computational Neuroscience. 3, 22, p. (art 22) 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  449. Published

    Effect of antibiotics and antimicrobial peptides on single protein motility

    Ryder, T. W. & Oddershede, L. B., 2009, In: Current Pharmaceutical Biotechnology. 10, 5, p. 486-493 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  450. Published

    Effect of energy metabolism and membrane structure on single ¿-receptor motility

    Ryder, T. W., 2009, København: Museum Tusculanum. 101 p.

    Research output: Book/Report › Ph.D. thesis › Research

  451. Published

    Effect of energy metabolism on protein motility in the bacterial outer membrane

    Ryder, T. W., Xu, L., Berg-Sørensen, K., Brown, Stanley & Oddershede, L. B., 2009, In: Biophysical Journal. 97, 5, p. 1305-1312 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  452. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, Pernille, Berg-Sorensen, K. & Oddershede, L. B., Jun 2009, In: Physical Biology. 6, 2, 9 p., 025015.

    Research output: Contribution to journal › Journal article › Research › peer-review

  453. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015

    Research output: Contribution to journal › Journal article › Research › peer-review

  454. Published

    Tracking cell-nanoparticle interactions

    Selhuber-Unkel, C. J. M., 1 Dec 2009, In: Journal of Biomedical Nanotechnology. 5, 6, Sp.Iss. Sl., p. 634-640 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  455. Published

    Dominant negative autoregulation limits steady-state repression levels in gene networks

    Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  456. Published

    Dynamics of the recovery from sRNA-mediated gene silencing

    Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  457. Published

    Nonideal behavior of intramolecular structure factor of dilute polymers in a theta solvent

    Shimomura, K., Nakanishi, H. & Mitarai, Namiko, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 051804

    Research output: Contribution to journal › Journal article › Research › peer-review

  458. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journal › Journal article › Research › peer-review

  459. Published

    Texture of the upper 1000 m in the GRIP and NorthGRIP ice cores

    Svensson, Anders, Durand, G., Mathiesen, Joachim, Persson, A. & Dahl-Jensen, Dorthe, 2009, Low Temperature Science Supplement Issue: Physics of Ice Core Records II. Hondoh, T. (ed.). Institute of Low Temperature Science, Hokkaido University, Sapporo Japan, Vol. 68. p. 107-113 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  460. Published

    Measurement of the spin-forbidden decay rate (3s3d)1D2¿(3s3p)3 P2,1 in 24Mg

    Therkildsen, K. T., Jensen, B. B., Ryder, C. P., Malossi, N. & Thomsen, Jan Westenkær, 2009, In: Physical Review A (Atomic, Molecular and Optical Physics). 79, 3, p. 034501 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  461. Published

    Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  462. Published

    The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations

    Wodzinska, K., Blicher, A. & Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  463. Published

    Phase-state dependent current fluctuation in pure lipid membranes

    Wunderlich, B., Leirer, C. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4592-4597 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  464. 2008
  465. Published

    Single-file dynamics with different diffusion constants

    Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106

    Research output: Contribution to journal › Journal article › Research › peer-review

  466. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journal › Journal article › Research › peer-review

  467. Published

    The cost and capacity of signaling in the Escherichia coli proetin reaction network

    Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

    Research output: Contribution to journal › Journal article › Research › peer-review

  468. Published

    Development of radiotracers for Vps10p domain (neurotensin-3) receptors

    Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, Albert, 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89

    Research output: Contribution to journal › Journal article › Research › peer-review

  469. Published

    A quantitative analysis of contractility in active cytoskeletal protein networks

    Bendix, Poul Martin, Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  470. Published

    Quantitative force calibration in viscoelastic media and living cells: 32nd Congress of the Federation of European Biochemical Societies. July 07-12 Vienna, Austria

    Berg-Sørensen, K., Fischer, M., Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2008, In: FEBS Journal. 274, Suppl. 1, p. 299-299

    Research output: Contribution to journal › Journal article › Research › peer-review

  471. Published

    The temperature depencence  and quantized nature of lipid membrane permeability

    Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, Thomas Rainer, 2008, In: Biophysical Journal. 96, 3, p. 160a-

    Research output: Contribution to journal › Journal article › Research › peer-review

  472. Published

    Efficient optical trapping and visualization of silver nano-particles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486–1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  473. Published

    Efficient optical trapping and visualization of silver nanoparticles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486-1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  474. Published

    Faf1 is expressed during neurodevelopment and is involved in Apaf1-dependent caspase-3 activation in proneural cells

    de Zio, Daniela, Ferraro, E., D'Amelio, M., Simoni, V., Bordi, M., Soroldoni, D., Berghella, L., Meyer, B. I. & Cecconi, F., Jun 2008, In: Cellular and Molecular Life Sciences. 65, 11, p. 1780-1790 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  475. Published

    Gene duplication models for directed networks with limits on growth

    Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

    Research output: Contribution to journal › Journal article › Research › peer-review

  476. Published

    Validation of calibration method in complex media

    Fischer, M., Richardson, A. C., Seyyed Reihani, S. N., Oddershede, L. B. & Berg-Sørensen, K., 2008, Proceedings, SPIE. SPIE - International Society for Optical Engineering, Vol. 7038. p. 703822

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  477. Published

    Stability of a sonoluminescing nitrogen bubble in chilled water

    Holzfuss, J. & Levinsen, Mogens, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 4, p. 046304 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  478. Published

    Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

    Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

    Research output: Contribution to journal › Journal article › Research › peer-review

  479. Published

    Thermodynamics of the nervous impulse

    Jackson, Andrew D. & Heimburg, Thomas Rainer, 2008, Structure and dynamics of membranous interfaces. Nag, K. (ed.). New York: Wiley, p. 317-340 24 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  480. Published

    Dynamical genetic regulation

    Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

    Research output: Book/Report › Book › Research › peer-review

  481. Published

    Komolgorov scaling from random force fields

    Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  482. Published

    Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence

    Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  483. Published

    Signalling and Feedback in Biological Networks

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  484. Published

    A quantitative analysis of indicators of scientific performance

    Lehmann, S., Jackson, Andrew D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  485. Published

    Dimensions, maximal growth sites, and optimization in the dielectric breakdown model

    Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203

    Research output: Contribution to journal › Journal article › Research › peer-review

  486. Published

    Elasticity with arbitrarily shaped inhomogeneity

    Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  487. Published

    Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

    Merksamer, P., Trusina, Ala & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947

    Research output: Contribution to journal › Journal article › Research › peer-review

  488. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  489. Published

    The generation of promoter-mediated transcriptional noise in bacteria

    Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

    Research output: Contribution to journal › Journal article › Research › peer-review

  490. Published

    Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

    Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240

    Research output: Contribution to journal › Journal article › Research › peer-review

  491. Published

    Mode locking of a driven Bose-Einstein condensate

    Nicolin, A., Carretero-González, R. & Jensen, Mogens Høgh, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208

    Research output: Contribution to journal › Journal article › Research › peer-review

  492. Published

    Resonant energy transfer in Bose-Einstien condensates

    Nicolin, A., Jensen, Mogens Høgh, Thomsen, Jan Westenkær & Carretero-Gonxález, R., 2008, In: Physica D : Non-linear Phenomena. 237, 19, p. 2476-2481

    Research output: Contribution to journal › Journal article › Research › peer-review

  493. Published

    Brownian Warps for Non-Rigid Registration

    Nielsen, Mads, Johansen, P., Jackson, Andrew D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  494. Published

    Missing levels in acoustic resonators

    Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, Clive Sigurd, 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  495. Published

    Optical tweezers techniques

    Oddershede, L. B., 2008, Handbook of Molecular Biophysics: Methods and Applications. Bohr, H. G. (ed.). 1. ed. ed. Berlin: Wiley-VCH, Vol. Chapter 6. p. Chapter 6

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  496. Published

    Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy

    Oliynyk, V., Jäger, M., Heimburg, Thomas Rainer, Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  497. Published

    Three-dimensional optical control of individual quantum dots

    Jauffred, Liselotte, Richardson, A. C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 10, p. 3376-3380

    Research output: Contribution to journal › Journal article › Research › peer-review

  498. Published

    Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1

    Pedersen, M., Lo Leggio, Leila, Grossmann, J. G., Larsen, Sine & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996

    Research output: Contribution to journal › Journal article › Research › peer-review

  499. Published

    The Role of MOR and the CI operator sites on the genetic switch temperate bacteriophage TP901-1

    Pedersen, M. & Hammer, K., 9 Dec 2008, In: Journal of Molecular Biology. 384, 3, p. 577-589

    Research output: Contribution to journal › Journal article › Research › peer-review

  500. Published

    Oscillation patterns in negative feedback loops

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2008, In: Proceedings of the National Academy of Science of the United States of America. 104, 16, p. 6533-6537

    Research output: Contribution to journal › Journal article › Research › peer-review

  501. Published

    Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria

    Rasmussen, M. B., Oddershede, L. B. & Siegumfeldt, H., 2008, In: Applied and Environmental Microbiology. 74, 8, p. 2441-2446

    Research output: Contribution to journal › Journal article › Research › peer-review

  502. Published

    Non-harmonic potential of a single beam optical trap

    Richardson, A. C., S. Reihani, S. N. & Oddershede, L. B., 2008, In: Optics Express. 16, 20, p. 15709-15717 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  503. Published

    Amplitude equation and long-rang interactions in underwater sand ripples in one dimension

    Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  504. Published

    Quantitative optical trapping of single gold nanorods

    Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003

    Research output: Contribution to journal › Journal article › Research › peer-review

  505. Published

    Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

    Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

    Research output: Contribution to journal › Journal article › Research › peer-review

  506. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  507. Published

    Rationalizing translation attenuation in the network architecture of the unfolded protein response

    Trusina, Ala, Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285

    Research output: Contribution to journal › Journal article › Research › peer-review

  508. Published

    Translation attenuation mechanism in unfolded protein response

    Trusina, Ala, Papa, F. & Tang, C., 1 Dec 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (eds.). p. 83-90 8 p. (NATO Science for Peace and Security Series B: Physics and Biophysics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

Previous 1 2 3 Next