Biocomplexity

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  1. 2009
  2. Published

    Gliomas induce and exploit microglial MT1-MMP expression for tumor expansion

    Markovic, D. S., Vinnakota, K., Chirasani, S., Synowitz, M., Raguet, H., Stock, K., Sliwa, M., Lehmann, S., Kälin, R., van Rooijen, N., Holmbeck, Kenn, Heppner, F. L., Kiwit, J., Matyash, V., Lehnardt, S., Kaminska, B., Glass, R. & Kettenmann, H., 28 Jul 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 30, p. 12530-5 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, Pernille, Berg-Sorensen, K. & Oddershede, L. B., Jun 2009, In: Physical Biology. 6, 2, 9 p., 025015.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A versatile approach to beta-amyloid fibril-binding compounds exploiting the Shirakawa/Hayashi protocol for trans-alkene synthesis

    Huynh, Tri Hien Viet, Mantel, M. L. H., Mikkelsen, K., Lindhardt, A. T., Nielsen, N. C., Otzen, D. & Skrydstrup, T., 19 Feb 2009, In: Organic Letters. 11, 4, p. 999-1002 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A spatial model of tumor-host interaction: application of chemotherapy

    Hinow, P., Gerlee, P. D. M., McCawley, L. J. & Quaranta, V., 2009, In: Mathematical Biosciences and Engineering. 6, 3, p. 521-546 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Comment on "Citation Statistics" by joint committee on quantitative assessment of research

    Lehmann, S., Lautrup, B. E. & Jackson, Andrew D., 2009, In: Statistical Science. 24, 1, p. 17-20 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Confocal microscopy of thick specimens

    Reihani, S. N. S. & Oddershede, L. B., 2009, In: Journal of Biomedical Optics. 14, 3, p. 030513-030513-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Die physik von nerven

    Heimburg, Thomas Rainer, 2009, In: Physik Journal (Print). 8, p. 33-39 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Diffusion and Partitioning of Fluorescent Lipid Probes in Phospholipid Monolayers

    Gudmand, M., Fidorra, M., Bjørnholm, T. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4598-4609 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Diffusion of finite-sized hard-core ineracting particles in a one-dimensional box: tagged particle dynamics

    Lizana, G. L. & Ambjörnsson, T., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, p. 051103 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Direct visualization of the lateral structure of porcine brain cerebrosides/POPC mixtures in presence and absence of cholesterol

    Fidorra, M., Heimburg, Thomas Rainer & Bagatolli, L. A., 2009, In: Biophysical Journal. 97, 1, p. 142-154 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Dominant negative autoregulation limits steady-state repression levels in gene networks

    Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Drying patterns: sensitivity to residual stresses

    Cohen, Y., Procaccia, I. & Mathiesen, Joachim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 4, Part 2, p. 046109

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Dynamic features of gene expression control by small regulatory RNAs

    Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Dynamics of growth: decisions in phages & gene segregation in bacteria

    Avlund, M., 2009, Niels Bohr Institute: Museum Tusculanum. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Dynamics of the recovery from sRNA-mediated gene silencing

    Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Effect of antibiotics and antimicrobial peptides on single protein motility

    Ryder, T. W. & Oddershede, L. B., 2009, In: Current Pharmaceutical Biotechnology. 10, 5, p. 486-493 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Effect of energy metabolism and membrane structure on single ¿-receptor motility

    Ryder, T. W., 2009, København: Museum Tusculanum. 101 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Effect of energy metabolism on protein motility in the bacterial outer membrane

    Ryder, T. W., Xu, L., Berg-Sørensen, K., Brown, Stanley & Oddershede, L. B., 2009, In: Biophysical Journal. 97, 5, p. 1305-1312 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Evolution of cell motility in an individual-based model of tumour growth

    Gerlee, P. D. M. & Anderson, A. R. A., 2009, In: Journal of Theoretical Biology. 259, 1, p. 67-83 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Fragmentation of fullerences, chapter in Hanbook of Nanophysics

    Albert, V. V., Chancey, R. T., Oddershede, L. B., Harris, F. E. & Sabin, J. R., 2009, Handbook of Nanophysics. Taylor & Francis

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  23. Published

    Frustrated bistability as a means to engineer oscillations in biological systems

    Krishna, S., Semsey, S. & Jensen, Mogens Høgh, 2009, In: Physical Biology. 6, 3, p. 036009

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms

    Gerlee, P. D. M., Lundh, T., Zhang, B. & Anderson, A. R. A., 2009, In: Journal of the Royal Society Interface. 6, 41, p. 1233-1245 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Heat distribution function for motion in a general potential at low temperature

    Fogedby, H. C. & Imparato, A., 2009, In: Journal of Physics A: Mathematical and Theoretical (Print Edition). 42, 47, p. 475004

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Ising model for neural data: Model quality and approximate methods for extracting functional connectivity

    Roudi, Y., Tyrcha, J. & Hertz, John, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 5, p. 051915 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Loewner driving functions for off-critical percolation clusters

    Kondo, Y., Mitarai, Namiko & Nakanishi, H., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 050102

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Measurement of the spin-forbidden decay rate (3s3d)1D2¿(3s3p)3 P2,1 in 24Mg

    Therkildsen, K. T., Jensen, B. B., Ryder, C. P., Malossi, N. & Thomsen, Jan Westenkær, 2009, In: Physical Review A (Atomic, Molecular and Optical Physics). 79, 3, p. 034501 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Melting of individual lipid components in binary lipid mixtures studied by FTIR spectroscopy. DSC and Monte Carlo simulations

    Fidorra, M., Heimburg, Thomas Rainer & Seeger, H. M., 2009, In: Biochimica et Biophysica Acta - Biomembranes. 1788, 3, p. 600-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Microenvironment driven invasion: a multiscale multimodel investigation

    Anderson, A. R. A., Rejniak, K. A., Gerlee, P. D. M. & Quaranta, V., 2009, In: Journal of Mathematical Biology. 58, 4-5, p. 579-624 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Minimum action method for the Kardar-Parisi-Zhang equation

    Fogedby, H. C. & Ren, W., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 4, Part 1, p. 041116

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability

    Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Modelling evolutionary cell behaviour using neural networks: application to tumour growth

    Gerlee, P. D. M. & Anderson, A. R. A., 2009, In: BioSystems. 95, 2, p. 166-174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Nanotoxikologie-es gibt immer zwei Seiten "review about nanotoxicology as an emerging field of research, indcludes interviews with Willie Peijnenburg, Priska Hinz, and Jens Otte

    Czerwinski, F., 2009, In: Junge Wissenschaft. 83

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Nonideal behavior of intramolecular structure factor of dilute polymers in a theta solvent

    Shimomura, K., Nakanishi, H. & Mitarai, Namiko, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 051804

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Optical tweezers techniques, chapter in Hanndbook of Molecular Biophysics: Methods and Applications

    Oddershede, L. B., 2009, Handbook of Molecular Biophysics. G. Bohr, H. (ed.). Wiley-VCH, p. 195-214 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  38. Published

    Oral manifestations among people living with HIV/AIDS in Tanzania

    Fabian, F. M., Kahabuka, F. K., Petersen, P. E., Shubi, F. M. & Jürgensen, N., 2009, In: International Dental Journal. 59, 4, p. 187-91 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Pathway identification by network pruning in the metabolic network of Escherichia coli

    Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Phase-state dependent current fluctuation in pure lipid membranes

    Wunderlich, B., Leirer, C. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4592-4597 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Physical properties of biological membranes. Chapter for "Encyclopedia of Applied Biophysics"

    Heimburg, Thomas Rainer, 2009, Wiley. 593 p.

    Research output: Book/Report › Book › Research

  42. Published

    Quantification of droplet deformation by electromagnetic trapping

    Møller, P. C. F. & Oddershede, L. B., 2009, In: EPL. 88, p. 48005 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Quantification of nano-scale intermembrane contact areas using fluorescence resonance energy transfer

    Bendix, Poul Martin, Pedersen, M. S. & Stamou, Dimitrios, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 30, p. 12341-12346 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Quantifying and pinpointing sources of noise in optical tweezers experiments

    Czerwinski, F., Richardson, A. C., Selhuber-Unkel, C. & Oddershede, L. B., 2009, Proceedings of SPIE, vol.7400, San Diego: Optical Trapping and Optical Micromanipulation VI. SPIE - International Society for Optical Engineering, Vol. 7400. p. 740004-740009 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  45. Published

    Quantifying noise in optical tweezers by Allan Variance

    Czerwinski, F., Richardson, A. C. & Oddershede, L. B., 2009, In: Optics Express. 17, 15, p. 13255-13269 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Reinforced communication and social navigation generate groups in model networks

    Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli

    Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Repressor lattice: feedback, commensurability, and dynamical frustration

    Jensen, Mogens Høgh, Krishna, S. & Pigolotti, S., 2009, In: Physical Review Letters. 103, 11, p. 118101

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Scaling properties of European research units

    Jamtveit, B., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 32, p. 13160-13163 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Statistical physics of pairwise probability models

    Roudi, Y., Aurell, E. & Hertz, John, 2009, In: Frontiers in Computational Neuroscience. 3, 22, p. (art 22) 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Symbolic dynamics of biological feedback networks

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2009, In: Physical Review Letters. 102, 8, p. 088701

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Texture of the upper 1000 m in the GRIP and NorthGRIP ice cores

    Svensson, Anders, Durand, G., Mathiesen, Joachim, Persson, A. & Dahl-Jensen, Dorthe, 2009, Low Temperature Science Supplement Issue: Physics of Ice Core Records II. Hondoh, T. (ed.). Institute of Low Temperature Science, Hokkaido University, Sapporo Japan, Vol. 68. p. 107-113 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  53. Published

    The influence of vesicle size and composition on alpha-synuclein structure and stability

    Kjær, L., Giehm, L., Otzen, D. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 7, p. 2857-2870 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    The temperature dependence of lipid membrane permeability, its quantized nature, and the influence of anesthetics

    Blicher, A., Wodzinska, K., Fidorra, M., Winterhalter, M. & Heimburg, Thomas Rainer, 2009, In: Biophysical Journal. 96, 11, p. 4581-4591 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    The thermodynamics of lipid ion channel formation in the absence and presence of anesthetics. BLM experiments and simulations

    Wodzinska, K., Blicher, A. & Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3319-3330 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Themed issue: membrane biophysics

    Heimburg, Thomas Rainer, 2009, In: Soft Matter. 5, 17, p. 3145-3147 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Thermodynamics and roughening of solid-solid interfaces

    Angheluta, L., Jettestuen, E. & Mathiesen, Joachim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 3, Part 1, p. 031601

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Toolbox model of evolution of prokaryotic metabolic networks and their regulation

    Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  59. Published

    Towards a thermodynamic theory of nerve pulse propagation

    Andersen, S. S., Jackson, Andrew D. & Heimburg, Thomas Rainer, 2009, In: Progress in Neurobiology. 88, 2, p. 104-113 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Variety in intracellular diffusion during the cell cycle

    Selhuber-Unkel, C., Yde, P., Berg-Sørensen, K. & Oddershede, L. B., 2009, In: Physical Biology. 6, 2, p. 025015

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Vesicles in electric fields: some novel aspects of membrane behavior

    Dimova, R., Bezlyepkina, N. & Domange Jordö, M. E., 2009, In: Soft Matter. 5, 17, p. 3201-3212 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Why do phage play dice?

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. 2008
  64. Published

    Rationalizing translation attenuation in the network architecture of the unfolded protein response

    Trusina, Ala, Papa, F. R. & Tang, C., 23 Dec 2008, In: Proceedings of the National Academy of Sciences USA (PNAS). 105, 51, p. 20280-20285

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    The Role of MOR and the CI operator sites on the genetic switch temperate bacteriophage TP901-1

    Pedersen, M. & Hammer, K., 9 Dec 2008, In: Journal of Molecular Biology. 384, 3, p. 577-589

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Translation attenuation mechanism in unfolded protein response

    Trusina, Ala, Papa, F. & Tang, C., 1 Dec 2008, Evolution from Cellular to Social Scales. Skjeltorp, A., Skjeltorp, A. & Belushkin, A. (eds.). p. 83-90 8 p. (NATO Science for Peace and Security Series B: Physics and Biophysics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  67. Published

    Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

    Merksamer, P., Trusina, Ala & Papa, F., 20 Nov 2008, In: Cell. 135, 5, p. 933-947

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

    Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Missing levels in acoustic resonators

    Noguetira, T. N., Sartorelli, J. C., Pato, M. P. & Ellegaard, Clive Sigurd, 1 Nov 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 5, part 2, 055201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Amplitude equation and long-rang interactions in underwater sand ripples in one dimension

    Schnipper, T., Mertens, K., Ellegaard, Clive Sigurd & Bohr, T., 1 Oct 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 78, 4, 047301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    The generation of promoter-mediated transcriptional noise in bacteria

    Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Faf1 is expressed during neurodevelopment and is involved in Apaf1-dependent caspase-3 activation in proneural cells

    De Zio, D., Ferraro, E., D'Amelio, M., Simoni, V., Bordi, M., Soroldoni, D., Berghella, L., Meyer, B. I. & Cecconi, F., Jun 2008, In: Cellular and Molecular Life Sciences. 65, 11, p. 1780-1790 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    A quantitative analysis of contractility in active cytoskeletal protein networks

    Bendix, Poul Martin, Koenderink, G. K., Cuvelier, D., Dogic, Z., Koelemann, B. N., Brieher, W. M., Field, C. M., Mahadevan, L. & Weitz, D. A., 15 Apr 2008, In: Biophysical Journal. 94, 8, p. 3126-3136 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

    Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Elasticity with arbitrarily shaped inhomogeneity

    Mathiesen, Joachim, Procaccia, I. & Regev, I., 26 Feb 2008, In: Physical Review E. 77, 2, 026606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

    Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The cost and capacity of signaling in the Escherichia coli proetin reaction network

    Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    A quantitative analysis of indicators of scientific performance

    Lehmann, S., Jackson, Andrew D. & Lautrup, B. E., 2008, In: Scientometrics. 76, 2, p. 369-390 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Brownian Warps for Non-Rigid Registration

    Nielsen, Mads, Johansen, P., Jackson, Andrew D., Lautrup, B. E. & Hauberg, S., 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 221-231 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Development of radiotracers for Vps10p domain (neurotensin-3) receptors

    Bender, D., Horvath, G., Jansen, P., Olsen, A. K. & Gjedde, Albert, 2008, In: NeuroImage. 41, Suppl. 2, p. T89-T89

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Dimensions, maximal growth sites, and optimization in the dielectric breakdown model

    Mathiesen, J., Jensen, Mogens Høgh & Bakke, J. O. H., 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 77, 6, p. 066203

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Dynamical genetic regulation

    Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

    Research output: Book/Report › Book › Research › peer-review

  84. Published

    Efficient optical trapping and visualization of silver nano-particles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486–1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Efficient optical trapping and visualization of silver nanoparticles

    Bosanac, L., Aabo, T., Bendix, Poul Martin & Oddershede, L. B., 2008, In: Nano Letters. 8, 5, p. 1486-1491 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Gene duplication models for directed networks with limits on growth

    Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Identification of Quaternary Structure and functional domains of the CI repressor from Bacteriophage TP901-1

    Pedersen, M., Lo Leggio, Leila, Grossmann, J. G., Larsen, Sine & Hammer, K., 2008, In: Journal of Molecular Biology. 373, p. 983-996

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Komolgorov scaling from random force fields

    Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Lipid membrane domain formation and alamethicin aggregation studied by calorimetry, sound velocity measurements, and atomic force microscopy

    Oliynyk, V., Jäger, M., Heimburg, Thomas Rainer, Buckin, V. & Kaatze, U., 2008, In: Biophysical Chemistry. 134, 3, p. 168-177 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Mode locking of a driven Bose-Einstein condensate

    Nicolin, A., Carretero-González, R. & Jensen, Mogens Høgh, 2008, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 036208

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Non-harmonic potential of a single beam optical trap

    Richardson, A. C., S. Reihani, S. N. & Oddershede, L. B., 2008, In: Optics Express. 16, 20, p. 15709-15717 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria

    Rasmussen, M. B., Oddershede, L. B. & Siegumfeldt, H., 2008, In: Applied and Environmental Microbiology. 74, 8, p. 2441-2446

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Optical tweezers techniques

    Oddershede, L. B., 2008, Handbook of Molecular Biophysics: Methods and Applications. Bohr, H. G. (ed.). 1. ed. ed. Berlin: Wiley-VCH, Vol. Chapter 6. p. Chapter 6

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  94. Published

    Oscillation patterns in negative feedback loops

    Pigolotti, S., Krishna, S. & Jensen, Mogens Høgh, 2008, In: Proceedings of the National Academy of Science of the United States of America. 104, 16, p. 6533-6537

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Quantitative force calibration in viscoelastic media and living cells: 32nd Congress of the Federation of European Biochemical Societies. July 07-12 Vienna, Austria

    Berg-Sørensen, K., Fischer, M., Richardson, A. C., Seyyed Reihani, S. N. & Oddershede, L. B., 2008, In: FEBS Journal. 274, Suppl. 1, p. 299-299

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Quantitative optical trapping of single gold nanorods

    Selhuber-Unkel, C., Zins, I., Schubert, O., Soennichsen, C. & Oddershede, L. B., 2008, In: Nano Letters. 8, 9, p. 2998-3003

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Resonant energy transfer in Bose-Einstien condensates

    Nicolin, A., Jensen, Mogens Høgh, Thomsen, Jan Westenkær & Carretero-Gonxález, R., 2008, In: Physica D : Non-linear Phenomena. 237, 19, p. 2476-2481

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Signalling and Feedback in Biological Networks

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  101. Published

    Single-file dynamics with different diffusion constants

    Ambjornsson, T., Silbey, R. J., Lizana, G. L. & Lomholt, M. A., 2008, In: Journal of Chemical Physics. 129, 18, p. 185106

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Single-molecule observations of topotecan-mediated Top1B activity at a unique DNA sequence

    Koster, D. A., Czerwinski, F. & Halby, L., 2008, In: Nucleic Acids Research. 36, p. 2301-2310 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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